相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Deciphering the Synergies of Reductive Soil Disinfestation Combined with Biochar and Antagonistic Microbial Inoculation in Cucumber Fusarium Wilt Suppression Through Rhizosphere Microbiota Structure
Ahmad Ali et al.
MICROBIAL ECOLOGY (2023)
Changes in Bacterial and Fungal Microbiomes Associated with Tomatoes of Healthy and Infected byFusarium oxysporumf. sp.lycopersici
Xin Zhou et al.
MICROBIAL ECOLOGY (2021)
Ecological Processes Shaping Bulk Soil and Rhizosphere Microbiome Assembly in a Long-Term Amazon Forest-to-Agriculture Conversion
Dennis Goss-Souza et al.
MICROBIAL ECOLOGY (2020)
Exploring novel bacterial terpene synthases
Gajendar Komati Reddy et al.
PLOS ONE (2020)
Agriculture and the Disruption of Plant-Microbial Symbiosis
Stephanie S. Porter et al.
TRENDS IN ECOLOGY & EVOLUTION (2020)
The natural recovery of soil microbial community and nitrogen functions after pasture abandonment in the Amazon region
Alexandre Pedrinho et al.
FEMS MICROBIOLOGY ECOLOGY (2020)
The Rhizosphere Microbiome ofMikania micranthaProvides Insight Into Adaptation and Invasion
Lijuan Yin et al.
FRONTIERS IN MICROBIOLOGY (2020)
Newly Isolated Streptomyces sp. JBS5-6 as a Potential Biocontrol Agent to Control Banana Fusarium Wilt: Genome Sequencing and Secondary Metabolite Cluster Profiles
Tao Jing et al.
FRONTIERS IN MICROBIOLOGY (2020)
Microbial basis of Fusarium wilt suppression by Allium cultivation
Tomoki Nishioka et al.
SCIENTIFIC REPORTS (2019)
Deciphering microbial diversity associated with Fusarium wilt-diseased and disease-free banana rhizosphere soil
Dengbo Zhou et al.
BMC MICROBIOLOGY (2019)
Beyond pathogens: microbiota interactions with the plant immune system
Paulo Jose P. L. Teixeira et al.
CURRENT OPINION IN MICROBIOLOGY (2019)
A Single Biosynthetic Gene Cluster Is Responsible for the Production of Bagremycin Antibiotics and Ferroverdin Iron Chelators
Loic Martinet et al.
MBIO (2019)
Bacterial terpene biosynthesis: challenges and opportunities for pathway engineering
Eric J. N. Helfrich et al.
BEILSTEIN JOURNAL OF ORGANIC CHEMISTRY (2019)
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
Victor J. Carrion et al.
SCIENCE (2019)
Crying out for help with root exudates: adaptive mechanisms by which stressed plants assemble health-promoting soil microbiomes
Stephen A. Rolfe et al.
CURRENT OPINION IN MICROBIOLOGY (2019)
Influence of resistance breeding in common bean on rhizosphere microbiome composition and function
Lucas William Mendes et al.
ISME JOURNAL (2018)
Genomic features of bacterial adaptation to plants
Asaf Levy et al.
NATURE GENETICS (2018)
Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean
Lucas William Mendes et al.
ISME JOURNAL (2018)
Induction of abiotic stress tolerance in plants by endophytic microbes
R. Lata et al.
LETTERS IN APPLIED MICROBIOLOGY (2018)
Modulation of plant chemistry by beneficial root microbiota
Desalegn W. Etalo et al.
NATURAL PRODUCT REPORTS (2018)
Assembly and ecological function of the root microbiome across angiosperm plant species
Connor R. Fitzpatrick et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Suppression of soil-borne Fusariwn pathogens of peanut by intercropping with the medicinal herb Atractylodes lancea
Xiaogang Li et al.
SOIL BIOLOGY & BIOCHEMISTRY (2018)
Microbial interactions within the plant holobiont
M. Amine Hassani et al.
MICROBIOME (2018)
Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits
Juan E. Perez-Jaramillo et al.
ISME JOURNAL (2017)
Identification of Root-Secreted Compounds Involved in the Communication Between Cucumber, the Beneficial Bacillus amyloliquefaciens, and the Soil-Borne Pathogen Fusarium oxysporum
Yunpeng Liu et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2017)
Paenibacillus polymyxa NSY50 suppresses Fusarium wilt in cucumbers by regulating the rhizospheric microbial community
Lu Shi et al.
SCIENTIFIC REPORTS (2017)
Fungal invasion of the rhizosphere microbiome
Emilie Chapelle et al.
ISME JOURNAL (2016)
The Pfam protein families database: towards a more sustainable future
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2016)
Soil memory as a potential mechanism for encouraging sustainable plant health and productivity
Erin R. Lapsansky et al.
CURRENT OPINION IN BIOTECHNOLOGY (2016)
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
Daniel H. Huson et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
Davide Bulgarelli et al.
CELL HOST & MICROBE (2015)
antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters
Tilmann Weber et al.
NUCLEIC ACIDS RESEARCH (2015)
Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
Sarah L. Lebeis et al.
SCIENCE (2015)
Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health
Zhong Wei et al.
NATURE COMMUNICATIONS (2015)
UProC: tools for ultra-fast protein domain classification
Peter Meinicke
BIOINFORMATICS (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
Expanded microbial genome coverage and improved protein family annotation in the COG database
Michael Y. Galperin et al.
NUCLEIC ACIDS RESEARCH (2015)
Terpene synthases are widely distributed in bacteria
Yuuki Yamada et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Long-term effects of eight soil health treatments to control plant-parasitic nematodes and Verticillium dahliae in agro-ecosystems
G. W. Korthals et al.
APPLIED SOIL ECOLOGY (2014)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
Taxonomical and functional microbial community selection in soybean rhizosphere
Lucas W. Mendes et al.
ISME JOURNAL (2014)
Ribosomal Database Project: data and tools for high throughput rRNA analysis
James R. Cole et al.
NUCLEIC ACIDS RESEARCH (2014)
'IAC Milenio' - Common bean cultivar with high grain quality
Sergio Augusto Morais Carbonell et al.
CROP BREEDING AND APPLIED BIOTECHNOLOGY (2014)
Differences between the rhizosphere microbiome of Beta vulgaris ssp maritima - ancestor of all beet crops - and modern sugar beets
Christin Zachow et al.
FRONTIERS IN MICROBIOLOGY (2014)
Differential abundance analysis for microbial marker-gene surveys
Joseph N. Paulson et al.
NATURE METHODS (2013)
Going back to the roots: the microbial ecology of the rhizosphere
Laurent Philippot et al.
NATURE REVIEWS MICROBIOLOGY (2013)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
Infection process of Fusarium oxysporum f. sp phaseoli on resistant, intermediate and susceptible bean cultivars
Alisson C. Pereira et al.
TROPICAL PLANT PATHOLOGY (2013)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
Microbial diversity determines the invasion of soil by a bacterial pathogen
Jan Dirk van Elsas et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Inferring Correlation Networks from Genomic Survey Data
Jonathan Friedman et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
Daniel McDonald et al.
GIGASCIENCE (2012)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
A novel statistical method for classifying habitat generalists and specialists
Robin L. Chazdon et al.
ECOLOGY (2011)
Analysis of bacterial communities in rhizosphere soil of healthy and diseased cotton (Gossypium sp.) at different plant growth stages
Yan Zhang et al.
PLANT AND SOIL (2011)
Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
Rodrigo Mendes et al.
SCIENCE (2011)
Metagenomic biomarker discovery and explanation
Nicola Segata et al.
GENOME BIOLOGY (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Soil microbial community structure in cucumber rhizosphere of different resistance cultivars to fusarium wilt
Huaiying Yao et al.
FEMS MICROBIOLOGY ECOLOGY (2010)
Plants versus pathogens: an evolutionary arms race
Jonathan P. Anderson et al.
FUNCTIONAL PLANT BIOLOGY (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
De novo biosynthesis of defense root exudates in response to Fusarium attack in barley
Arnaud Lanoue et al.
NEW PHYTOLOGIST (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Contrasts between habitat generalists and specialists: an empirical extension to the basic metacommunity framework
Shubha N. Pandit et al.
ECOLOGY (2009)
Rhizosphere bacteria help plants tolerate abiotic stress
Jungwook Yang et al.
TRENDS IN PLANT SCIENCE (2009)
Reconciling neutral community models and environmental filtering: theory and an empirical test
Franck Jabot et al.
OIKOS (2008)
IAC-Alvorada and IAC-Diplomata: new common bean cultivars
Sergio Augusto Morais Carbonell et al.
CROP BREEDING AND APPLIED BIOTECHNOLOGY (2008)
Modularity and community structure in networks
M. E. J. Newman
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Sodium boric acid: a Tris-free, cooler conductive medium for DNA electrophoresis
JR Brody et al.
BIOTECHNIQUES (2004)
Trade-offs in community ecology: linking spatial scales and species coexistence
JM Kneitel et al.
ECOLOGY LETTERS (2004)
The structure and function of complex networks
MEJ Newman
SIAM REVIEW (2003)
Beans (Phaseolus spp.) -: model food legumes
WJ Broughton et al.
PLANT AND SOIL (2003)
The COG database: a tool for genome-scale analysis of protein functions and evolution
RL Tatusov et al.
NUCLEIC ACIDS RESEARCH (2000)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
