相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains
Sergey V. Ulianov et al.
GENOME RESEARCH (2016)
Insulator dysfunction and oncogene activation in IDH mutant gliomas
William A. Flavahan et al.
NATURE (2016)
Biology and Applications of CRISPR Systems: Harnessing Nature's Toolbox for Genome Engineering
Addison V. Wright et al.
CELL (2016)
Cause and Consequence of Tethering a SubTAD to Different Nuclear Compartments
Patrick J. Wijchers et al.
MOLECULAR CELL (2016)
Structural organization of the inactive X chromosome in the mouse
Luca Giorgetti et al.
NATURE (2016)
Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
Alistair N. Boettiger et al.
NATURE (2016)
Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture
Emily M. Darrow et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Activation of proto-oncogenes by disruption of chromosome neighborhoods
Denes Hnisz et al.
SCIENCE (2016)
Spatial organization of chromatin domains and compartments in single chromosomes
Siyuan Wang et al.
SCIENCE (2016)
Formation of Chromosomal Domains by Loop Extrusion
Geoffrey Fudenberg et al.
CELL REPORTS (2016)
Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
Neva C. Durand et al.
CELL SYSTEMS (2016)
Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions
Fabian Grubert et al.
CELL (2015)
Identification of Gene Positioning Factors Using High-Throughput Imaging Mapping
Sigal Shachar et al.
CELL (2015)
Stable Chromosome Condensation Revealed by Chromosome Conformation Capture
Kyle P. Eagen et al.
CELL (2015)
CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
Zhonghui Tang et al.
CELL (2015)
Population Variation and Genetic Control of Modular Chromatin Architecture in Humans
Sebastian M. Waszak et al.
CELL (2015)
Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C
Tsung-Han S. Hsieh et al.
CELL (2015)
Perinuclear Anchoring of H3K9-Methylated Chromatin Stabilizes Induced Cell Fate in C. elegans Embryos
Adriana Gonzalez-Sandoval et al.
CELL (2015)
Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
Dario G. Lupianez et al.
CELL (2015)
CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
Ya Guo et al.
CELL (2015)
The Role of Chromosome Domains in Shaping the Functional Genome
Tom Sexton et al.
CELL (2015)
Chromatin Fibers Are Formed by Heterogeneous Groups of Nucleosomes In Vivo
Maria Aurelia Ricci et al.
CELL (2015)
Dynamic Reorganization of Extremely Long-Range Promoter-Promoter Interactions between Two States of Pluripotency
Onkar Joshi et al.
CELL STEM CELL (2015)
High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila
Fidel Ramirez et al.
MOLECULAR CELL (2015)
CTCF Binding Polarity Determines Chromatin Looping
Elzo de Wit et al.
MOLECULAR CELL (2015)
Locus-Specific Targeting to the X Chromosome Revealed by the RNA Interactome of CTCF
Johnny T. Kung et al.
MOLECULAR CELL (2015)
Chromatin architecture reorganization during stem cell differentiation
Jesse R. Dixon et al.
NATURE (2015)
Condensin-driven remodelling of X chromosome topology during dosage compensation
Emily Crane et al.
NATURE (2015)
Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome
Stefan Schoenfelder et al.
NATURE GENETICS (2015)
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C
Borbala Mifsud et al.
NATURE GENETICS (2015)
Three-dimensional genome architecture: players and mechanisms
Ana Pombo et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)
The Mediator complex: a central integrator of transcription
Benjamin L. Allen et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)
The yeast genome undergoes significant topological reorganization in quiescence
Mark T. Rutledge et al.
NUCLEIC ACIDS RESEARCH (2015)
Nanoscale spatial organization of the HoxD gene cluster in distinct transcriptional states
Pierre J. Fabre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain
Maxence Vieux-Rochas et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
Adrian L. Sanborn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Transcription factor trapping by RNA in gene regulatory elements
Alla A. Sigova et al.
SCIENCE (2015)
CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation
Varun Narendra et al.
SCIENCE (2015)
Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes
Brian J. Beliveau et al.
NATURE COMMUNICATIONS (2015)
Global Reorganization of the Nuclear Landscape in Senescent Cells
Tamir Chandra et al.
CELL REPORTS (2015)
The 3D Organization of Chromatin Explains Evolutionary Fragile Genomic Regions
Camille Berthelot et al.
CELL REPORTS (2015)
Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture
Matteo Vietri Rudan et al.
CELL REPORTS (2015)
Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes
Wenxiu Ma et al.
NATURE METHODS (2015)
Bipartite structure of the inactive mouse X chromosome
Xinxian Deng et al.
GENOME BIOLOGY (2015)
Reactivation of Developmentally Silenced Globin Genes by Forced Chromatin Looping
Wulan Deng et al.
CELL (2014)
Predictive Polymer Modeling Reveals Coupled Fluctuations in Chromosome Conformation and Transcription
Luca Giorgetti et al.
CELL (2014)
Genome-wide Mapping and Characterization of Notch-Regulated Long Noncoding RNAs in Acute Leukemia
Thomas Trimarchi et al.
CELL (2014)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
CTCF regulates the human p53 gene through direct interaction with its natural antisense transcript, Wrap53
Ricardo Saldana-Meyer et al.
GENES & DEVELOPMENT (2014)
Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization
Iain Williamson et al.
GENES & DEVELOPMENT (2014)
Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
Francois Le Dily et al.
GENES & DEVELOPMENT (2014)
Hi-C Analysis in Arabidopsis Identifies the KNOT, a Structure with Similarities to the flamenco Locus of Drosophila
Stefan Grob et al.
MOLECULAR CELL (2014)
Genome-wide Hi-C Analyses in Wild-Type and Mutants Reveal High-Resolution Chromatin Interactions in Arabidopsis
Suhua Feng et al.
MOLECULAR CELL (2014)
Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe
Takeshi Mizuguchi et al.
NATURE (2014)
Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment
Jim R. Hughes et al.
NATURE GENETICS (2014)
CTCF: an architectural protein bridging genome topology and function
Chin-Tong Ong et al.
NATURE REVIEWS GENETICS (2014)
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre
Ezgi Hacisuleyman et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)
Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
Jessica Zuin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Chromatin decondensation is sufficient to alter nuclear organization in embryonic stem cells
Pierre Therizols et al.
SCIENCE (2014)
Cooperativity, Specificity, and Evolutionary Stability of Polycomb Targeting in Drosophila
Bernd Schuettengruber et al.
CELL REPORTS (2014)
DNA Dynamics during Early Double-Strand Break Processing Revealed by Non-Intrusive Imaging of Living Cells
Hicham Saad et al.
PLOS GENETICS (2014)
Insulator function and topological domain border strength scale with architectural protein occupancy
Kevin Van Bortle et al.
GENOME BIOLOGY (2014)
Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues
Jiang Zhu et al.
CELL (2013)
Single-Cell Dynamics of Genome-Nuclear Lamina Interactions
Jop Kind et al.
CELL (2013)
Genome Architecture: Domain Organization of Interphase Chromosomes
Wendy A. Bickmore et al.
CELL (2013)
LBR and Lamin A/C Sequentially Tether Peripheral Heterochromatin and Inversely Regulate Differentiation
Irina Solovei et al.
CELL (2013)
Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
Jennifer E. Phillips-Cremins et al.
CELL (2013)
Chromosomal Contact Permits Transcription between Coregulated Genes
Stephanie Fanucchi et al.
CELL (2013)
Long-Range Chromatin Contacts in Embryonic Stem Cells Reveal a Role for Pluripotency Factors and Polycomb Proteins in Genome Organization
Matthew Denholtz et al.
CELL STEM CELL (2013)
Cohesin-mediated interactions organize chromosomal domain architecture
Sevil Sofueva et al.
EMBO JOURNAL (2013)
Redistribution of the Lamin B1 genomic binding profile affects rearrangement of heterochromatic domains and SAHF formation during senescence
Mahito Sadaie et al.
GENES & DEVELOPMENT (2013)
Lamin B1 depletion in senescent cells triggers large-scale changes in gene expression and the chromatin landscape
Parisha P. Shah et al.
GENES & DEVELOPMENT (2013)
Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments
Vlad C. Seitan et al.
GENOME RESEARCH (2013)
Chromatin Insulators: Linking Genome Organization to Cellular Function
Jennifer E. Phillips-Cremins et al.
MOLECULAR CELL (2013)
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
Takashi Nagano et al.
NATURE (2013)
High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation
Matthew D. Simon et al.
NATURE (2013)
Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
Fan Lai et al.
NATURE (2013)
High-Resolution Mapping of the Spatial Organization of a Bacterial Chromosome
Tung B. K. Le et al.
SCIENCE (2013)
A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs
Guillaume Andrey et al.
SCIENCE (2013)
The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome
Jesse M. Engreitz et al.
SCIENCE (2013)
Organization of the Mitotic Chromosome
Natalia Naumova et al.
SCIENCE (2013)
Transcription Factor Occupancy Can Mediate Active Turnover of DNA Methylation at Regulatory Regions
Angelika Feldmann et al.
PLOS GENETICS (2013)
Changes in the organization of the genome during the mammalian cell cycle
Luca Giorgetti et al.
GENOME BIOLOGY (2013)
Controlling Long-Range Genomic Interactions at a Native Locus by Targeted Tethering of a Looping Factor
Wulan Deng et al.
CELL (2012)
Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
Tom Sexton et al.
CELL (2012)
Nature and function of insulator protein binding sites in the Drosophila genome
Yuri B. Schwartz et al.
GENOME RESEARCH (2012)
Widespread plasticity in CTCF occupancy linked to DNA methylation
Hao Wang et al.
GENOME RESEARCH (2012)
The macrosatellite DXZ4 mediates CTCF-dependent long-range intrachromosomal interactions on the human inactive X chromosome
Andrea H. Horakova et al.
HUMAN MOLECULAR GENETICS (2012)
A map of the cis-regulatory sequences in the mouse genome
Yin Shen et al.
NATURE (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
Spatial partitioning of the regulatory landscape of the X-inactivation centre
Elphege P. Nora et al.
NATURE (2012)
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
Yin C. Lin et al.
NATURE IMMUNOLOGY (2012)
Robust 4C-seq data analysis to screen for regulatory DNA interactions
Harmen J. G. van de Werken et al.
NATURE METHODS (2012)
Comprehensive Identification and Annotation of Cell Type-Specific and Ubiquitous CTCF-Binding Sites in the Human Genome
Hebing Chen et al.
PLOS ONE (2012)
Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes
Brian J. Beliveau et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Gene Loops Enhance Transcriptional Directionality
Sue Mei Tan-Wong et al.
SCIENCE (2012)
Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny
Amelie S. Veron et al.
BMC GENOMICS (2011)
Polycomb-Dependent Regulatory Contacts between Distant Hox Loci in Drosophila
Frederic Bantignies et al.
CELL (2011)
A Regulatory Archipelago Controls Hox Genes Transcription in Digits
Thomas Montavon et al.
CELL (2011)
CTCF-mediated functional chromatin interactome in pluripotent cells
Lusy Handoko et al.
NATURE GENETICS (2011)
Functional Analysis of CTCF During Mammalian Limb Development
Natalia Soshnikova et al.
DEVELOPMENTAL CELL (2010)
Molecular Maps of the Reorganization of Genome-Nuclear Lamina Interactions during Differentiation
Daan Peric-Hupkes et al.
MOLECULAR CELL (2010)
A three-dimensional model of the yeast genome
Zhijun Duan et al.
NATURE (2010)
Mediator and cohesin connect gene expression and chromatin architecture
Michael H. Kagey et al.
NATURE (2010)
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
Stefan Schoenfelder et al.
NATURE GENETICS (2010)
Cohesin: Its Roles and Mechanisms
Kim Nasmyth et al.
ANNUAL REVIEW OF GENETICS (2009)
Chromosomal Dynamics at the Shh Locus: Limb Bud-Specific Differential Regulation of Competence and Active Transcription
Takanori Amano et al.
DEVELOPMENTAL CELL (2009)
An oestrogen-receptor-α-bound human chromatin interactome
Melissa J. Fullwood et al.
NATURE (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development
Le-Ben Wan et al.
DEVELOPMENT (2008)
CTCF regulates cell cycle progression of αβ T cells in the thymus
Helen Heath et al.
EMBO JOURNAL (2008)
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
Lars Guelen et al.
NATURE (2008)
CTCF physically links cohesin to chromatin
Eric D. Rubio et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Novel role for the Aurora B kinase in epigenetic marking of silent chromatin in differentiated postmitotic cells
Pierangela Sabbattini et al.
EMBO JOURNAL (2007)
Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
Laurie Gordon et al.
GENOME RESEARCH (2007)
Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites
Xiaohui Xie et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Higher-order structures of chromatin: The elusive 30 nm fiber
David J. Tremethick
CELL (2007)
Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch
Mary E. Donohoe et al.
MOLECULAR CELL (2007)
Mapping networks of physical interactions between genomic elements using 5C technology
Josee Dostie et al.
NATURE PROTOCOLS (2007)
Recurring genomic breaks in independent lineages support genomic fragility
Hanno Hinsch et al.
BMC EVOLUTIONARY BIOLOGY (2006)
Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
Michael J. Rust et al.
NATURE METHODS (2006)
Imaging intracellular fluorescent proteins at nanometer resolution
Eric Betzig et al.
SCIENCE (2006)
CTCF mediates long-range chromatin looping and local histone modification in the β-globin locus
Erik Splinter et al.
GENES & DEVELOPMENT (2006)
CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2
Sreenivasulu Kurukuti et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps
WJ Murphy et al.
SCIENCE (2005)
X-ray structure of a tetranucleosome and its implications for the chromatin fibre
T Schalch et al.
NATURE (2005)
Gene loops juxtapose promoters and terminators in yeast
JM O'Sullivan et al.
NATURE GENETICS (2004)
The β-globin nuclear compartment in development and erythroid differentiation
RJ Palstra et al.
NATURE GENETICS (2003)
Chromosomal variation in neurons of the developing and adult mammalian nervous system
SK Rehen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
AC Bell et al.
NATURE (2000)
CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus
AT Hark et al.
NATURE (2000)