相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Distinct routes of lineage development reshape the human blood hierarchy across ontogeny
Faiyaz Notta et al.
SCIENCE (2016)
Cell Fate Specification Based on Tristability in the Inner Cell Mass of Mouse Blastocysts
Laurane De Mot et al.
BIOPHYSICAL JOURNAL (2016)
Heterogeneity in Oct4 and Sox2 Targets Biases Cell Fate in 4-Cell Mouse Embryos
Mubeen Goolam et al.
CELL (2016)
Single-cell gene expression profiling and cell state dynamics: collecting data, correlating data points and connecting the dots
Carsten Marr et al.
CURRENT OPINION IN BIOTECHNOLOGY (2016)
Neural Progenitors Adopt Specific Identities by Directly Repressing All Alternative Progenitor Transcriptional Programs
Eva Kutejova et al.
DEVELOPMENTAL CELL (2016)
Distinct myeloid progenitor-differentiation pathways identified through single-cell RNA sequencing
Roy Drissen et al.
NATURE IMMUNOLOGY (2016)
Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data
Andrea Ocone et al.
BIOINFORMATICS (2015)
Design and Analysis of Single-Cell Sequencing Experiments
Dominic Gruen et al.
CELL (2015)
Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors
Franziska Paul et al.
CELL (2015)
FGF/MAPK signaling sets the switching threshold of a bistable circuit controlling cell fate decisions in embryonic stem cells
Christian Schroeter et al.
DEVELOPMENT (2015)
Wnt signaling and tbx16 form a bistable switch to commit bipotential progenitors to mesoderm
Cortney M. Bouldin et al.
DEVELOPMENT (2015)
Defining cell types and states with single-cell genomics
Cole Trapnell
GENOME RESEARCH (2015)
Cell dynamics and gene expression control in tissue homeostasis and development
Pau Rue et al.
MOLECULAR SYSTEMS BIOLOGY (2015)
Single-cell messenger RNA sequencing reveals rare intestinal cell types
Dominic Grun et al.
NATURE (2015)
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
Florian Buettner et al.
NATURE BIOTECHNOLOGY (2015)
Decoding the regulatory network of early blood development from single-cell gene expression measurements
Victoria Moignard et al.
NATURE BIOTECHNOLOGY (2015)
Computational and analytical challenges in single-cell transcriptomics
Oliver Stegle et al.
NATURE REVIEWS GENETICS (2015)
Identifying functional gene regulatory network phenotypes underlying single cell transcriptional variability
James Park et al.
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY (2015)
Each cell counts: Hematopoiesis and immunity research in the era of single cell genomics
Diego Adhemar Jaitin et al.
SEMINARS IN IMMUNOLOGY (2015)
Co-existence of intact stemness and priming of neural differentiation programs in mES cells lacking Trim71
Sibylle Mitschka et al.
SCIENTIFIC REPORTS (2015)
Heterogeneous lineage marker expression in naive embryonic stem cells is mostly due to spontaneous differentiation
Gautham Nair et al.
SCIENTIFIC REPORTS (2015)
Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis
Cristina Pina et al.
CELL REPORTS (2015)
Classification of transient behaviours in a time-dependent toggle switch model
Berta Verd et al.
BMC SYSTEMS BIOLOGY (2014)
Single-Cell Trajectory Detection Uncovers Progression and Regulatory Coordination in Human B Cell Development
Sean C. Bendall et al.
CELL (2014)
Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency
Elsa Abranches et al.
DEVELOPMENT (2014)
Gata6, Nanog and Erk signaling control cell fate in the inner cell mass through a tristable regulatory network
Sylvain Bessonnard et al.
DEVELOPMENT (2014)
Single cell dissection of early kidney development: multilineage priming
Eric W. Brunskill et al.
DEVELOPMENT (2014)
Wnt/β-catenin and FGF signalling direct the specification and maintenance of a neuromesodermal axial progenitor in ensembles of mouse embryonic stem cells
David A. Turner et al.
DEVELOPMENT (2014)
Dynamic Heterogeneity and DNA Methylation in Embryonic Stem Cells
Zakary S. Singer et al.
MOLECULAR CELL (2014)
Deconstructing transcriptional heterogeneity in pluripotent stem cells
Roshan M. Kumar et al.
NATURE (2014)
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2014)
Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages
Yusuke Ohnishi et al.
NATURE CELL BIOLOGY (2014)
Validation of noise models for single-cell transcriptomics
Dominic Grun et al.
NATURE METHODS (2014)
Mapping the route from naive pluripotency to lineage specification
Tuezer Kalkan et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2014)
Time-variant clustering model for understanding cell fate decisions
Wei Huang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Controlling low rates of cell differentiation through noise and ultrahigh feedback
Robert Ahrends et al.
SCIENCE (2014)
Transcriptome-wide Variability in Single Embryonic Development Cells
Vincent Piras et al.
SCIENTIFIC REPORTS (2014)
Accounting for technical noise in single-cell RNA-seq experiments
Philip Brennecke et al.
NATURE METHODS (2013)
Genome-wide mechanisms of Smad binding
M. Morikawa et al.
ONCOGENE (2013)
Transcriptional Regulation of Lineage Commitment - A Stochastic Model of Cell Fate Decisions
Jose Teles et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Single cell lineage analysis of mouse embryonic stem cells at the exit from pluripotency
Jamie Trott et al.
BIOLOGY OPEN (2013)
The molecular and mathematical basis of Waddington's epigenetic landscape: A framework for post-Darwinian biology?
Sui Huang
BIOESSAYS (2012)
Wnt-Notch signalling: An integrated mechanism regulating transitions between cell states
Silvia Munoz-Descalzo et al.
BIOESSAYS (2012)
Single-Cell Expression Analyses during Cellular Reprogramming Reveal an Early Stochastic and a Late Hierarchic Phase
Yosef Buganim et al.
CELL (2012)
Hematopoiesis: A Human Perspective
Sergei Doulatov et al.
CELL STEM CELL (2012)
Bistability, Bifurcations, and Waddington's Epigenetic Landscape
James E. Ferrell
CURRENT BIOLOGY (2012)
Towards a statistical mechanics of cell fate decisions
Jordi Garcia-Ojalvo et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2012)
Drosophila blastoderm patterning
Johannes Jaeger et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2012)
Dissecting ensemble networks in ES cell populations reveals micro-heterogeneity underlying pluripotency
Jamie Trott et al.
MOLECULAR BIOSYSTEMS (2012)
Inferring rules of lineage commitment in haematopoiesis
Cristina Pina et al.
NATURE CELL BIOLOGY (2012)
Correlations Between the Levels of Oct4 and Nanog as a Signature for Naive Pluripotency in Mouse Embryonic Stem Cells
Silvia Munoz Descalzo et al.
STEM CELLS (2012)
A deep profiler's guide to cytometry
Sean C. Bendall et al.
TRENDS IN IMMUNOLOGY (2012)
Pluripotency in the Embryo and in Culture
Jennifer Nichols et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2012)
A deterministic map of Waddington's epigenetic landscape for cell fate specification
Sudin Bhattacharya et al.
BMC SYSTEMS BIOLOGY (2011)
Cellular Decision Making and Biological Noise: From Microbes to Mammals
Gabor Balazsi et al.
CELL (2011)
Gene expression heterogeneities in embryonic stem cell populations: origin and function
Alfonso Martinez Ariasi et al.
CURRENT OPINION IN CELL BIOLOGY (2011)
Primitive Endoderm Differentiates via a Three-Step Mechanism Involving Nanog and RTK Signaling
Stephen Frankenberg et al.
DEVELOPMENTAL CELL (2011)
Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression
Lesley T. MacNeil et al.
GENOME RESEARCH (2011)
The Potential Landscape of Genetic Circuits Imposes the Arrow of Time in Stem Cell Differentiation
Jin Wang et al.
BIOPHYSICAL JOURNAL (2010)
Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network
H. Efsun Arda et al.
MOLECULAR SYSTEMS BIOLOGY (2010)
Functional roles for noise in genetic circuits
Avigdor Eldar et al.
NATURE (2010)
Single cell cultures of Drosophila neuroectodermal and mesectodermal central nervous system progenitors reveal different degrees of developmental autonomy
Karin Lueer et al.
NEURAL DEVELOPMENT (2009)
Bistable switches control memory and plasticity in cellular differentiation
Lei Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Regulated Fluctuations in Nanog Expression Mediate Cell Fate Decisions in Embryonic Stem Cells
Tibor Kalmar et al.
PLOS BIOLOGY (2009)
Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences
Arjun Raj et al.
CELL (2008)
Distinct sequential cell behaviours direct primitive endoderm formation in the mouse blastocyst
Berenika Plusa et al.
DEVELOPMENT (2008)
Wnt/Notch signalling and information processing during development
Penelope Hayward et al.
DEVELOPMENT (2008)
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
Hannah H. Chang et al.
NATURE (2008)
Nanog safeguards pluripotency and mediates germline development
Ian Chambers et al.
NATURE (2007)
TGFβ-SMAD signal transduction:: molecular specificity and functional flexibility
Bernhard Schmierer et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)
Elucidation of the phenotypic, functional, and molecular topography of a myeloerythroid progenitor cell hierarchy
Cornelis J. H. Pronk et al.
CELL STEM CELL (2007)
Reciprocal activation of GATA-1 and PU.1 marks initial specification of hematopoietic stem cells into myeloerythroid and myelolymphoid lineages
Yojiro Arinobu et al.
CELL STEM CELL (2007)
Hematopoietic developmental pathways: on cellular basis
H. Iwasaki et al.
ONCOGENE (2007)
Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network
Vanessa Vermeirssen et al.
GENOME RESEARCH (2007)
Network motifs: theory and experimental approaches
Uri Alon
NATURE REVIEWS GENETICS (2007)
Bifurcation dynamics in lineage-commitment in bipotent progenitor cells
Sui Huang et al.
DEVELOPMENTAL BIOLOGY (2007)
Multilineage transcriptional priming and determination of alternate hematopoietic cell fates
Peter Laslo et al.
CELL (2006)
Diffusion maps
Ronald R. Coifman et al.
APPLIED AND COMPUTATIONAL HARMONIC ANALYSIS (2006)
An excitable gene regulatory circuit induces transient cellular differentiation
GM Süel et al.
NATURE (2006)
Filtering transcriptional noise during development: concepts and mechanisms
AM Arias et al.
NATURE REVIEWS GENETICS (2006)
Genomic regulatory networks and animal development
A Stathopoulos et al.
DEVELOPMENTAL CELL (2005)
Specification of embryonic axis and mosaic development in ascidians
H Nishida
DEVELOPMENTAL DYNAMICS (2005)
Embryonic stem cell differentiation: emergence of a new era in biology and medicine
G Keller
GENES & DEVELOPMENT (2005)
Gene regulatory networks for development
M Levine et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Cell fates as high-dimensional attractor states of a complex gene regulatory network
S Huang et al.
PHYSICAL REVIEW LETTERS (2005)
Asymmetric division and lineage commitment at the level of hematopoietic stem cells: Inference from differentiation in daughter cell and granddaughter cell pairs
H Takano et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2004)
Lineage choice and differentiation in mouse embryos and embryonic stem cells
DAF Loebel et al.
DEVELOPMENTAL BIOLOGY (2003)
Cellular patterning of the vertebrate embryo
L Mathis et al.
TRENDS IN GENETICS (2002)
Network motifs: Simple building blocks of complex networks
R Milo et al.
SCIENCE (2002)
Intrinsic and extrinsic contributions to stochasticity in gene expression
PS Swain et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Stochastic gene expression in a single cell
MB Elowitz et al.
SCIENCE (2002)
Myeloid or lymphoid promiscuity as a critical step in hematopoietic lineage commitment
T Miyamoto et al.
DEVELOPMENTAL CELL (2002)
Network motifs in the transcriptional regulation network of Escherichia coli
SS Shen-Orr et al.
NATURE GENETICS (2002)
A genomic regulatory network for development
EH Davidson et al.
SCIENCE (2002)
Autonomous behavior of hematopoietic stem cells
LM Kamminga et al.
EXPERIMENTAL HEMATOLOGY (2000)
A clonogenic common myeloid progenitor that gives rise to all myeloid lineages
K Akashi et al.
NATURE (2000)
分享论文
