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Yidan Ouyang et al.
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Jianxia Jiang et al.
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Alexey A. Dmitriev et al.
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Rula Sa et al.
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Tingting Chen et al.
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Ziyi Cheng et al.
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Bui Quang Minh et al.
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RepeatModeler2 for automated genomic discovery of transposable element families
Jullien M. Flynn et al.
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Dandan Lang et al.
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Jianping Zhang et al.
ISCIENCE (2020)
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
Shujun Ou et al.
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Chromosome-scale pseudomolecules refined by optical, physical and genetic maps in flax
Frank M. You et al.
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TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
Olga Dudchenko et al.
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Wheat Ms2 encodes for an orphan protein that confers male sterility in grass species
Fei Ni et al.
NATURE COMMUNICATIONS (2017)
Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana
Dan-Dan Li et al.
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Construction of an SNP-based high-density linkage map for flax (Linum usitatissimum L.) using specific length amplified fragment sequencing (SLAF-seq) technology
Liuxi Yi et al.
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GenomeScope: fast reference-free genome profiling from short reads
Gregory W. Vurture et al.
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The Dfam database of repetitive DNA families
Robert Hubley et al.
NUCLEIC ACIDS RESEARCH (2016)
Ectopic Expression of BnaC.CP20.1 Results in Premature Tapetal Programmed Cell Death in Arabidopsis
Liping Song et al.
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Involvement of a universal amino acid synthesis impediment in cytoplasmic male sterility in pepper
Xianping Fang et al.
SCIENTIFIC REPORTS (2016)
Breeding high-yield superior quality hybrid super rice by rational design
Qian Qian et al.
NATIONAL SCIENCE REVIEW (2016)
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea et al.
NATURE BIOTECHNOLOGY (2015)
Ballgown bridges the gap between transcriptome assembly and expression analysis
Alyssa C. Frazee et al.
NATURE BIOTECHNOLOGY (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
ALLMAPS: robust scaffold ordering based on multiple maps
Haibao Tang et al.
GENOME BIOLOGY (2015)
Repbase Update, a database of repetitive elements in eukaryotic genomes
Weidong Bao et al.
MOBILE DNA (2015)
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
David M. Emms et al.
GENOME BIOLOGY (2015)
Male Sterility and Fertility Restoration in Crops
Letian Chen et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 65 (2014)
InterProScan 5: genome-scale protein function classification
Philip Jones et al.
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The Rice Restorer Rf4 for Wild-Abortive Cytoplasmic Male Sterility Encodes a Mitochondrial-Localized PPR Protein that Functions in Reduction of WA352 Transcripts
Huiwu Tang et al.
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Efficient multivariate linear mixed model algorithms for genome-wide association studies
Xiang Zhou et al.
NATURE METHODS (2014)
The Cysteine Protease CEP1, a Key Executor Involved in Tapetal Programmed Cell Death, Regulates Pollen Development in Arabidopsis
Dandan Zhang et al.
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Cysteine Protease 51 (CP51), an anther-specific cysteine protease gene, is essential for pollen exine formation in Arabidopsis
Yongxue Yang et al.
PLANT CELL TISSUE AND ORGAN CULTURE (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
Infernal 1.1: 100-fold faster RNA homology searches
Eric P. Nawrocki et al.
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GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations
Gordon Gremme et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2013)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang et al.
NUCLEIC ACIDS RESEARCH (2012)
The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads
Zhiwen Wang et al.
PLANT JOURNAL (2012)
Integrated consensus genetic and physical maps of flax (Linum usitatissimum L.)
Sylvie Cloutier et al.
THEORETICAL AND APPLIED GENETICS (2012)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
Phylogenetic network of Linum species as revealed by non-coding chloroplast DNA sequences
Yong-Bi Fu et al.
GENETIC RESOURCES AND CROP EVOLUTION (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
NtCP56, a new cysteine protease in Nicotiana tabacum L., involved in pollen grain development
Xiao-mei Zhang et al.
JOURNAL OF EXPERIMENTAL BOTANY (2009)
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
David Ellinghaus et al.
BMC BIOINFORMATICS (2008)
AUGUSTUS:: ab initio prediction of alternative transcripts
Mario Stanke et al.
NUCLEIC ACIDS RESEARCH (2006)
CAFE: a computational tool for the study of gene family evolution
T De Bie et al.
BIOINFORMATICS (2006)
Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice
A Jan et al.
PLANT AND CELL PHYSIOLOGY (2006)
Evidence of the domestication history of flax (Linum usitatissimum L.) from genetic diversity of the sad2 locus
RG Allaby et al.
THEORETICAL AND APPLIED GENETICS (2005)
De novo identification of repeat families in large genomes
AL Price et al.
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Isolation and characterization of a rice cysteine protease gene, OSCP1, using T-DNA gene-trap system
S Lee et al.
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
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r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
MJ Sanderson
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Automated de novo identification of repeat sequence families in sequenced genomes
ZR Bao et al.
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The evolutionary fate and consequences of duplicate genes
M Lynch et al.
SCIENCE (2000)
Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)
MA Koch et al.
MOLECULAR BIOLOGY AND EVOLUTION (2000)
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
A Bairoch et al.
NUCLEIC ACIDS RESEARCH (2000)