4.8 Article

TACO produces robust multisample transcriptome assemblies from RNA-seq

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NATURE METHODS
卷 14, 期 1, 页码 68-70

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NATURE PUBLISHING GROUP
DOI: 10.1038/NMETH.4078

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  1. NIH Prostate Specialized Program of Research Excellence [P50CA186786, F30 CA 200328, U01CA214170, U24 CA210967]
  2. Prostate Cancer Foundation
  3. Howard Hughes Medical Institute
  4. NATIONAL CANCER INSTITUTE [U01CA214170, F30CA200328, P50CA186786, U24CA210967] Funding Source: NIH RePORTER
  5. NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES [T32GM007315, T32GM007863] Funding Source: NIH RePORTER

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O Accurate transcript structure and abundance inference from RNA sequencing (RNA-seq) data is foundational for molecular discovery. Here we present TACO, a computational method to reconstruct a consensus transcriptome from multiple RNA-seq data sets. TACO employs novel change-point detection to demarcate transcript start and end sites, leading to improved reconstruction accuracy compared with other tools in its class. The tool is available at http://tacorna.github.io and can be readily incorporated into RNA-seq analysis workflows.

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