The Small RNA Component of Arabidopsis thaliana Phloem Sap and Its Response to Iron Deficiency

In order to discover sRNA that might function during iron deficiency stress, RNA was prepared from phloem exudates of Arabidopsis thaliana, and used for RNA-seq. Bioanalyzer results indicate that abundant RNA from phloem is small in size-less than 200 nt. Moreover, typical rRNA bands were not observed. Sequencing of eight independent phloem RNA samples indicated that tRNA-derived fragments, specifically 5 & PRIME; tRFs and 5 & PRIME; tRNA halves, are highly abundant in phloem sap, comprising about 46% of all reads. In addition, a set of miRNAs that are present in phloem sap was defined, and several miRNAs and sRNAs were identified that are differentially expressed during iron deficiency.

Automated summary

To identify sRNA functioning during iron deficiency stress, RNA from Arabidopsis thaliana phloem exudates was sequenced. Bioanalyzer analysis revealed the presence of abundant small-sized RNA (<200 nt) in phloem, with no typical rRNA bands observed. Sequencing of eight independent phloem RNA samples showed high abundance of tRNA-derived fragments, specifically 5' tRFs and 5' tRNA halves, constituting approximately 46% of all reads. Additionally, a set of miRNAs present in phloem sap was defined, and differentially expressed miRNAs and sRNAs during iron deficiency were identified.