☆ 4.6 Review

The Future Is Now: Unraveling the Expanding Potential of Human (Necro)Microbiome in Forensic Investigations

MICROORGANISMS (2023)

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Article Microbiology

Dissecting the microbial community structure of internal organs during the early postmortem period in a murine corpse model

Ruina Liu et al.

Summary: This study investigated the changes in microbial composition among different organs during the early decomposition stage of mammalian corpses. The dominant microbes differed by organ, but tended to become more similar as decomposition progressed. The microbiome compositions and postmortem metabolic pathways also varied by time since death, and these alterations were organ specific.

BMC MICROBIOLOGY (2023)

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Review Microbiology

Trends in forensic microbiology: From classical methods to deep learning

Huiya Yuan et al.

Summary: Forensic microbiology is widely used in diagnosing causes and manner of death, individual identification, crime scene detection, and postmortem interval estimation. Traditional microbial culture has limitations in efficiency, consumption, and quantitative analysis. Advanced technologies such as high-throughput sequencing and artificial intelligence have led to the establishment of machine learning and deep learning models for forensic prognosis and image analysis. This article summarizes the application and development of forensic microbiology, as well as the progress in machine learning and deep learning based on microbial genome sequencing and microbial images, providing a future outlook.

FRONTIERS IN MICROBIOLOGY (2023)

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Article Microbiology

No evidence for a common blood microbiome based on a population study of 9,770 healthy humans

Cedric C. S. Tan et al.

Summary: A large-scale population study reveals that there is no consistent core blood microbiome in healthy individuals. While human blood is generally considered sterile, recent research suggests the presence of a blood microbiome in healthy people. After analyzing sequencing data from multiple cohorts, researchers identified 117 microbial species in the blood of 9,770 healthy individuals, primarily commensals associated with the gut, mouth, and genitourinary tract. However, no co-occurrence patterns or associations between host phenotypes and microbes were found, suggesting that the translocation of commensal microbes from other body sites into the bloodstream is transient and sporadic.

NATURE MICROBIOLOGY (2023)

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Review Biotechnology & Applied Microbiology

Microbiome-Based Stain Analyses in Crime Scenes

Meghna Swayambhu et al.

Summary: Recent advancements in next-generation sequencing technologies combined with machine learning have shown the potential of microbiome-based analyses in various fields such as clinical diagnostics and forensic sciences. In the field of forensics, microbial markers found in biological stains left at crime scenes can provide crucial information for crime scene reconstruction, including the bodily origin, time since deposition, and donor(s) of the stain. Despite the promising results, there is a need to address the gaps in comprehensive assessment of the method's limitations and the establishment of a standard operating procedure before integrating microbiome-based analyses into routine forensic casework.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2023)

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Review Biology

Estimation of Late Postmortem Interval: Where Do We Stand? A Literature Review

Lorenzo Franceschetti et al.

Summary: Estimating time of death can be challenging for forensic experts, especially when dealing with highly decomposed or skeletal remains. Factors such as decomposition process, taphonomic changes, and environmental conditions can affect the accuracy of estimation. Various methods, including post-mortem changes examination, bone structure analysis, and instrumental and molecular approaches, have been used, but accurate estimation remains difficult.

BIOLOGY-BASEL (2023)

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Article Medicine, Legal

The Sexome - A proof of concept study into microbial transfer between heterosexual couples after sexual intercourse

Ruby Dixon et al.

Summary: The detection and recovery of male DNA after sexual assault is crucial in investigations, especially when the perpetrator is unknown. However, the interpretation of male DNA profiles can be challenging due to mixed profiles with the victim's DNA. This study explores the potential of microbiome analysis as an adjunct method for perpetrator identification, demonstrating significant disruption to microbial diversity post-coitus and a transfer of the female microbiome during intercourse.

FORENSIC SCIENCE INTERNATIONAL (2023)

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Review Microbiology

Human microbiome myths and misconceptions

Alan W. W. Walker et al.

Summary: Interest in human microbiome research has grown significantly in the past two decades, but with it comes hype and misinformation that can undermine progress and public trust. This article highlights myths and misconceptions in the literature, emphasizing the importance of evidence-based research and recognizing the complexity of the human microbiome.

NATURE MICROBIOLOGY (2023)

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Review Biotechnology & Applied Microbiology

Microbial traces and their role in forensic science

Mateusz Speruda et al.

Summary: Forensic microbiology, an emerging field in criminal investigations, focuses on studying the microbiome and mycobiome associated with decaying corpses. The composition of these microbial communities can provide valuable information about the crime, including the post-mortem interval and cause of death. Microbial traces found at the crime scene can serve as clear evidence of guilt. Current identification methods rely on metagenome and rRNA gene sequencing.

JOURNAL OF APPLIED MICROBIOLOGY (2022)

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Article Ecology

Analysis of Postmortem Intestinal Microbiota Successional Patterns with Application in Postmortem Interval Estimation

Ruina Liu et al.

Summary: The study investigated microbial succession patterns during decomposition, identified seven different succession patterns, and developed a random forest regression model to predict postmortem intervals. Lactobacillus, Dubosiella, Enterococcus, and the Lachnospiraceae NK4A136 group were considered significant biomarkers for the model.

MICROBIAL ECOLOGY (2022)

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Article Biotechnology & Applied Microbiology

Postmortem interval assessment by MALDI-TOF mass spectrometry analysis in murine cadavers

Federica Dell'Annunziata et al.

Summary: This study evaluated the use of MALDI-TOF mass spectrometry in identifying species associated with thanatomicrobiota and epinecrotic communities on 10 murine cadavers. It found that postmortem microbiota in external cavities changed over time with reduced taxonomic diversity, while internal organs showed signs of microbial invasion at specific time points. MALDI-TOF showed promise in estimating postmortem interval and introducing a simple strategy for PMI estimation in forensic applications.

JOURNAL OF APPLIED MICROBIOLOGY (2022)

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Article Multidisciplinary Sciences

Development of gut microbiota during the first 2 years of life

Mona-Lisa Wernroth et al.

Summary: This study used 16S rRNA sequencing to analyze fecal and saliva samples from infants and their mothers at four time points during the first 2 years of life. The findings showed that gut microbiota in infants have low diversity and share some properties with the oral microbiota. The composition of gut microbiota undergoes a significant shift during the first 2 years of life, towards a more diverse adult-like microbiota.

SCIENTIFIC REPORTS (2022)

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Article Environmental Sciences

MALDI-TOF Mass Spectrometry Analysis and Human Post-Mortem Microbial Community: A Pilot Study

Carlo Pietro Campobasso et al.

Summary: This study verifies the application of MALDI-TOF MS as a cheap and quick method for microbe taxonomic identification and studying the post-mortem microbiome. The results show that the post-mortem microbiome becomes increasingly different from the starting communities over time, and there is a turnover of microbial communities during decomposition.

INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH (2022)

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Article Microbiology

Postmortem Skeletal Microbial Community Composition and Function in Buried Human Remains

Alexandra L. Emmons et al.

Summary: Microbial communities in postmortem bone are different from those in soil and human gut, with depositional environment influencing the bone microbiome.

MSYSTEMS (2022)

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Review Biotechnology & Applied Microbiology

Machine learning for data integration in human gut microbiome

Peishun Li et al.

Summary: This article discusses the role of gut microbiota in the development of human diseases and the use of machine learning algorithms to analyze gut microbiome data. The paper introduces different machine learning approaches for identifying key features and predicting phenotypes, and reviews the advances and challenges of machine learning in gut microbiome applications.

MICROBIAL CELL FACTORIES (2022)

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Article Microbiology

The devil is in the details: Variable impacts of season, BMI, sampling site temperature, and presence of insects on the post-mortem microbiome

Aaron M. Tarone et al.

Summary: This study investigated the impact of various factors on post-mortem microbial communities, including BMI, sex, insect activity, season, repeat sampling, decomposition time, and temperature. The results showed that season, temperature, BMI, and sex significantly affected the post-mortem microbiome, while insects had a homogenizing influence on the total bacterial community.

FRONTIERS IN MICROBIOLOGY (2022)

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Article Microbiology

Urinary Microbiome of Reproductive-Age Asymptomatic European Women

Svetlana Ugarcina Perovic et al.

Summary: This study characterized the bacterial species diversity of the female urinary microbiome (FUM) using extended culturomics and long-read sequencing. A total of 297 bacterial species were identified, with different species detected by different methods. The study provides valuable insights into the potential relationship between specific microbiome members and urinary diseases/disorders.

MICROBIOLOGY SPECTRUM (2022)

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Review Nutrition & Dietetics

The Core Human Microbiome: Does It Exist and How Can We Find It? A Critical Review of the Concept

Itai Sharon et al.

Summary: The core microbiome, which represents consistent microbial features across populations, is of great interest in microbiome research. Understanding the core microbiome can lead to the identification of dysbiosis-causing elements and potential treatments for microbiome-related health conditions. However, defining the core microbiome is a complex task that requires collaboration between experts in various fields.

NUTRIENTS (2022)

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Article Multidisciplinary Sciences

Correlation between postmortem microbial signatures and substance abuse disorders

Gulnaz T. Javan et al.

Summary: The gut-brain-axis is a circuit that links the neural, endocrine, and immunological systems with gut microbial communities. The gut microbiome plays significant roles in human mind and behavior. This study examined the gut microbiome composition in substance abuse disorder cases and found that younger-aged cases had higher microbial abundance. The influence of substances in overdose cases was a significant factor in determining microbiome similarity. Samples of the same cause of death clustered together, showing high similarity. This research extends the knowledge of postmortem microbial communities and contributes to understanding human putrefaction.

PLOS ONE (2022)

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Review Microbiology

Advances in artificial intelligence-based microbiome for PMI estimation

Ziwei Wang et al.

Summary: This review describes the postmortem succession of the microbiome in cadavers and their surroundings, and summarizes the application, advantages, problems, and future strategies of AI-based microbiome analysis for PMI estimation.

FRONTIERS IN MICROBIOLOGY (2022)

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Article Genetics & Heredity

Application of Microbiome in Forensics

Jun Zhang et al.

GENOMICS PROTEOMICS & BIOINFORMATICS (2022)

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Article Medicine, General & Internal

Analysis of Microbial Communities: An Emerging Tool in Forensic Sciences

Audrey Gouello et al.

Summary: The objective of forensic sciences is to reconstruct the scenario of a crime by finding clues at the crime scene. Traditional samples like DNA or fingerprints have limitations, and a new type of sample called the microbiome has emerged as a potential tool in forensics. The characteristics of microbial communities can be used to differentiate and classify the origins of human biological traces, and they can also provide information about post-mortem intervals or soil communities. However, the microbiome is influenced by time and environmental factors, which presents a challenge.

DIAGNOSTICS (2022)

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Review Medicine, Legal

Microbiology in minimally invasive autopsy: best techniques to detect infection. ESGFOR (ESCMID study group of forensic and post-mortem microbiology) guidelines

Veroniek Saegeman et al.

Summary: The manuscript aims to provide guidelines on post-mortem microbiology techniques in minimally invasive autopsy settings and introduce standardization in sampling methods. Post-mortem microbiology is crucial for identifying causative organisms in infection-related deaths. Meaningful interpretation of results and networking collaboration between microbiologists and pathologists are essential to maximize the yield of post-mortem microbiology in minimally invasive autopsies.

FORENSIC SCIENCE MEDICINE AND PATHOLOGY (2021)

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Article Medicine, Legal

A formalized model of the Trace

David-Olivier Jaquet-Chiffelle et al.

Summary: This work proposes a formalized model grounded in forensic science to support a unified understanding of the Trace across scientific disciplines. The model precisely defines how traces are manifested through the modification of scenes and provides examples of its application in forensic science, including DNA and digital evidence. The broader implications of this model in the context of COVID-19 are also discussed, highlighting the value of cohesive scientific study of the Trace.

FORENSIC SCIENCE INTERNATIONAL (2021)

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Article Multidisciplinary Sciences

Potential use of molecular and structural characterization of the gut bacterial community for postmortem interval estimation in Sprague Dawley rats

Huan Li et al.

Summary: This study investigated the changes in rectal microbiota composition at different time intervals after death, revealing significant shifts in microbial communities and identifying bacterial taxa crucial for estimating postmortem interval. The analysis found that the genus level provided the most information for estimating the time since death, and a prediction model using genus-level data from high-throughput sequencing was constructed, showing potential for estimating the shortest time since death.

SCIENTIFIC REPORTS (2021)

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Article Multidisciplinary Sciences

Defining and quantifying the core microbiome: Challenges and prospects

Alexander T. Neu et al.

Summary: The term core microbiome refers to a set of microbial taxa or attributes associated with those taxa that are characteristic of a host or environment, with little consensus on how it should be quantified in practice. Various metrics have been used, but many are susceptible to biases, highlighting the need for standardized metrics for studying core microbiomes.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2021)

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Review Ecology

Microbiome in Death and Beyond: Current Vistas and Future Trends

Dipayan Roy et al.

Summary: Forensic medicine has traditionally relied on biochemical, anthropologic, and histopathologic evidence, but newer fields like thanatomicrobiome and advancements in genomic and proteomic techniques are emerging to supplement traditional methods. Key areas of focus include postmortem interval estimation through genomic analysis, determination of cause of death using molecular techniques, and establishing biological profiles through genomics and proteomics advancements. Challenges faced include the reliance on animal models for studies and the high standard of accuracy needed for forensic evidence in criminal investigations.

FRONTIERS IN ECOLOGY AND EVOLUTION (2021)

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Review Medicine, General & Internal

The Auto-Brewery Syndrome: A Perfect Metabolic Storm with Clinical and Forensic Implications

Ricardo Jorge Dinis-Oliveira

Summary: Auto-brewery syndrome is a rare and underresearched condition thought to be caused by fungal dysbiosis in the gut, with treatment involving antifungal drugs and lifestyle changes. Further studies on the human microbiome are needed to understand how imbalances in gut bacteria allow yeast colonization on a pathological level.

JOURNAL OF CLINICAL MEDICINE (2021)

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Article Biology

Usefulness of Microbiome for Forensic Geolocation: A Review

Christian Haarkotter et al.

Summary: Forensic microbiomics is a promising tool for crime investigation, connecting individuals to specific locations through microbiota. While the field has been well studied, there are challenges and limitations, but it has potential applications in human trafficking and ancient DNA studies.

LIFE-BASEL (2021)

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Review Chemistry, Multidisciplinary

Proteomics in Forensic Analysis: Applications for Human Samples

Van-An Duong et al.

Summary: Proteomics, a powerful tool for studying biological systems, can provide a holistic view of physiological and biochemical states of samples. It is highly valuable in forensic science and can provide a better global picture of a sample compared to genomic analysis.

APPLIED SCIENCES-BASEL (2021)

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Review Microbiology

Identifying biases and their potential solutions in human microbiome studies

Jacob T. Nearing et al.

Summary: Advances in DNA sequencing technology have improved researchers' ability to explore human microbiomes, but systemic biases introduced during the process can lead to inconsistent results. Biases begin with sample collection and persist throughout experiments, resulting in observed microbial communities that differ significantly from the true composition. efforts to reduce bias in sequence-based human microbiome studies are ongoing.

MICROBIOME (2021)

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Review Environmental Sciences

Disentangling soil microbiome functions by perturbation

Adam Ossowicki et al.

Summary: Soil biota play a critical role in providing various ecosystem services, and perturbation methods can be used to control and reveal the mechanisms of microbial community changes and functions. Perturbations can decrease microbial diversity, reduce the abundance of specific taxa, and disrupt interactions within microbial consortia and with hosts.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2021)

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Review Microbiology

At the Interface of Life and Death: Post-mortem and Other Applications of Vaginal, Skin, and Salivary Microbiome Analysis in Forensics

Sarah Ahannach et al.

Summary: Microbial forensics is a promising tool to strengthen traditional forensic investigative methods by utilizing microbial fingerprinting in areas such as trace evidence, source tracking, geolocation, and circumstances of death. Current research mainly focuses on soil and internal organ samples, while the microbiomes of skin, mouth, and vaginal samples remain underexplored, especially in cases of sexual assault and femicide. Future studies should investigate the sensitivity of post-mortem microbiota to various factors and enhance the application of microbiome-related knowledge in forensic investigations.

FRONTIERS IN MICROBIOLOGY (2021)

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Review Infectious Diseases

Impact of diet on human gut microbiome and disease risk

S. R. Mansour et al.

Summary: The gut microbiome of humans is a diverse group of trillions of microorganisms that play a crucial role in digestion and nutrient absorption. An unbalanced diet may lead to disease development.

NEW MICROBES AND NEW INFECTIONS (2021)

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Article Medicine, Legal

Retrieving forensic information about the donor through bacterial profiling

Katherine Phan et al.

INTERNATIONAL JOURNAL OF LEGAL MEDICINE (2020)

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Article Microbiology

Microbial community analysis using high-throughput sequencing technology: a beginner's guide for microbiologists

Jihoon Jo et al.

JOURNAL OF MICROBIOLOGY (2020)

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Article Microbiology

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

Shi Huang et al.

MSYSTEMS (2020)

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Article Medicine, Legal

A field study to evaluate PMI estimation methods for advanced decomposition stages

Stefan Pittner et al.

INTERNATIONAL JOURNAL OF LEGAL MEDICINE (2020)

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Review Nutrition & Dietetics

Influence of Maternal Milk on the Neonatal Intestinal Microbiome

Kathyayini P. Gopalakrishna et al.

NUTRIENTS (2020)

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Article Microbiology

Human microbiome: an academic update on human body site specific surveillance and its possible role

Elakshi Dekaboruah et al.

ARCHIVES OF MICROBIOLOGY (2020)

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Article Genetics & Heredity

Microbiome-based body site of origin classification of forensically relevant blood traces

Celia Diez Lopez et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2020)

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Letter Microbiology

Microbiome definition re-visited: old concepts and new challenges

Gabriele Berg et al.

MICROBIOME (2020)

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Review Biotechnology & Applied Microbiology

Impact of the Human Microbiome in Forensic Sciences: a Systematic Review

Manuel G. Garcia et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2020)

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Review Biotechnology & Applied Microbiology

Thanatomicrobiome and epinecrotic community signatures for estimation of post-mortem time interval in human cadaver

Hirak Ranjan Dash et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2020)

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Article Microbiology

Microbial succession from a subsequent secondary death event following mass mortality

Lindsay Harrison et al.

BMC MICROBIOLOGY (2020)

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Review Medicine, Legal

Biowarfare, bioterrorism and biocrime: A historical overview on microbial harmful applications

Manuela Oliveira et al.

FORENSIC SCIENCE INTERNATIONAL (2020)

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Article Microbiology

Effects of Extended Postmortem Interval on Microbial Communities in Organs of the Human Cadaver

Holly Lutz et al.

FRONTIERS IN MICROBIOLOGY (2020)

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Review Medicine, Legal

Fragment analysis in forensic anthropology

Douglas H. Ubelaker et al.

FORENSIC SCIENCES RESEARCH (2020)

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Review Infectious Diseases

Post-mortem microbiology in sudden death: sampling protocols proposed in different clinical settings

A. Fernandez-Rodriguez et al.

CLINICAL MICROBIOLOGY AND INFECTION (2019)

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Article Ecology

Necrobiome framework for bridging decomposition ecology of autotrophically and heterotrophically derived organic matter

M. Eric Benbow et al.

ECOLOGICAL MONOGRAPHS (2019)

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Article Medicine, Legal

A reliable method for estimating the postmortem interval from the biochemistry of the vitreous humor, temperature and body weight

Cristina Cordeiro et al.

FORENSIC SCIENCE INTERNATIONAL (2019)

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Article Microbiology

Sperm Microbiota and Its Impact on Semen Parameters

David Baud et al.

FRONTIERS IN MICROBIOLOGY (2019)

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Article Genetics & Heredity

Classification of individuals and the potential to detect sexual contact using the microbiome of the pubic region

Diana W. Williams et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2019)

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Article Microbiology

Bacterial Community Succession, Transmigration, and Differential Gene Transcription in a Controlled Vertebrate Decomposition Model

Zachary M. Burcham et al.

FRONTIERS IN MICROBIOLOGY (2019)

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Editorial Material Microbiology

Forensic, investigative and diagnostic microbiology: similar technologies but different priorities

Leah D. Blondeau et al.

FUTURE MICROBIOLOGY (2019)

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Article Medicine, Legal

Total RNA Analysis of Bacterial Community Structural and Functional Shifts Throughout Vertebrate Decomposition

Zachary M. Burcham et al.

JOURNAL OF FORENSIC SCIENCES (2019)

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Article Multidisciplinary Sciences

Machine learning performance in a microbial molecular autopsy context: A cross-sectional postmortem human population study

Yu Zhang et al.

PLOS ONE (2019)

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Article Genetics & Heredity

Oral gram-positive bacterial DNA-based identification of saliva from highly degraded samples

Jun Ohta et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2019)

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Article Genetics & Heredity

Whole-genome sequencing of Neisseria gonorrhoeae in a forensic transmission case

Carlos Frances-Cuesta et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2019)

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Article Multidisciplinary Sciences

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

Jethro S. Johnson et al.

NATURE COMMUNICATIONS (2019)

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Article Multidisciplinary Sciences

Succession of oral microbiota community as a tool to estimate postmortem interval

Kaikai Dong et al.

SCIENTIFIC REPORTS (2019)

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Review Genetics & Heredity

Estimating the postmortem interval using microbes: Knowledge gaps and a path to technology adoption

Jessica L. Metcalf

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2019)

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Review Medicine, Legal

An interdisciplinary review of the thanatomicrobiome in human decomposition

Gulnaz T. Javan et al.

FORENSIC SCIENCE MEDICINE AND PATHOLOGY (2019)

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Article Medicine, Legal

Trace Evidence Potential in Postmortem Skin Microbiomes: From Death Scene to Morgue

Whitney A. Kodama et al.

JOURNAL OF FORENSIC SCIENCES (2019)

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Article Biology

Profiling microbial strains in urban environments using metagenomic sequencing data

Moreno Zolfo et al.

BIOLOGY DIRECT (2018)

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Article Genetics & Heredity

Targeted sequencing of clade-specific markers from skin microbiomes for forensic human identification

Sarah E. Schmedes et al.

FORENSIC SCIENCE INTERNATIONAL-GENETICS (2018)

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Article Biotechnology & Applied Microbiology

Sex-related differences in the thanatomicrobiome in postmortem heart samples using bacterial gene regions V1-2 and V4

C. R. Bell et al.

LETTERS IN APPLIED MICROBIOLOGY (2018)

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Review Biochemistry & Molecular Biology

Current understanding of the human microbiome

Jack A. Gilbert et al.

NATURE MEDICINE (2018)

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Article Multidisciplinary Sciences

A large-scale survey of the postmortem human microbiome, and its potential to provide insight into the living health condition

Jennifer L. Pechal et al.

SCIENTIFIC REPORTS (2018)

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Article Multidisciplinary Sciences

Spatial and Environmental Variation of the Human Hair Microbiota

Lauren Brinkac et al.

SCIENTIFIC REPORTS (2018)

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Article Multidisciplinary Sciences

Rapid oral bacteria detection based on real-time PCR for the forensic identification of saliva

Ju Yeon Jung et al.

SCIENTIFIC REPORTS (2018)

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Review Biotechnology & Applied Microbiology

Microbial forensics: new breakthroughs and future prospects

Manuela Oliveira et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)

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Article Medicine, Legal

Thanatomicrobiome composition profiling as a tool for forensic investigation

Wei Zhou et al.

FORENSIC SCIENCES RESEARCH (2018)

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Article Biotechnology & Applied Microbiology

HuMiChip2 for strain level identification and functional profiling of human microbiomes

Qichao Tu et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2017)

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Article Medicine, Legal

Daily thanatomicrobiome changes in soil as an approach of postmortem interval estimation: An ecological perspective

Joe Adserias-Garriga et al.

FORENSIC SCIENCE INTERNATIONAL (2017)

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Integrating the microbiome as a resource in the forensics toolkit

Thomas H. Clarke et al.

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Individualization of pubic hair bacterial communities and the effects of storage time and temperature

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The Cause of Death of a Child in the 18th Century Solved by Bone Microbiome Typing Using Laser Microdissection and Next Generation Sequencing

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Application of MALDI-TOF MS for Estimating the Postmortem Interval in Rat Muscle Samples

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Dynamics of the oral microbiota as a tool to estimate time since death

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Postmortem succession of gut microbial communities in deceased human subjects

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Microbiota fingerprints lose individually identifying features over time

David Wilkins et al.

MICROBIOME (2017)

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Microbial forensic analysis of human-associated bacteria inhabiting hand surface

Jisun Park et al.

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Determination of the post mortem interval in skeletal remains by the comparative use of different physico-chemical methods: Are they reliable as an alternative to 14C?

Alberto Amadasi et al.

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Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies

Sudarshan A. Shetty et al.

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Microbial community assembly and metabolic function during mammalian corpse decomposition

Jessica L. Metcalf et al.

SCIENCE (2016)

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Microbiology of death

Jessica L. Metcalf et al.

CURRENT BIOLOGY (2016)

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Editorial Material Biochemistry & Molecular Biology

Microbial forensics: next-generation sequencing as catalyst

Irene Kuiper

EMBO REPORTS (2016)

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Fluorescently labeled bacteria provide insight on post-mortem microbial transmigration

Z. M. Burcham et al.

FORENSIC SCIENCE INTERNATIONAL (2016)

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Article Medicine, Legal

Prevalence of Chlamydia trachomatis and Neisseria gonorrhoeae infections detected by real-time PCR among individuals reporting sexual assaults in the Paris, France area

Francoise Jaureguy et al.

FORENSIC SCIENCE INTERNATIONAL (2016)

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Review Microbiology

Expansion of Microbial Forensics

Sarah E. Schmedes et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2016)

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Review Pathology

Postmortem Changes in Animal Carcasses and Estimation of the Postmortem Interval

J. W. Brooks

VETERINARY PATHOLOGY (2016)

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Article Multidisciplinary Sciences

Human Thanatomicrobiome Succession and Time Since Death

Gulnaz T. Javan et al.

SCIENTIFIC REPORTS (2016)

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Article Multidisciplinary Sciences

Potential use of bacterial community succession for estimating post-mortem interval as revealed by high-throughput sequencing

Juanjuan Guo et al.

SCIENTIFIC REPORTS (2016)

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Article Microbiology

Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics

Juan Jovel et al.

FRONTIERS IN MICROBIOLOGY (2016)

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Review Microbiology

The Thanatomicrobiome: A Missing Piece of the Microbial Puzzle of Death

Gulnaz T. Javan et al.

FRONTIERS IN MICROBIOLOGY (2016)

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Article Urology & Nephrology

The Bladder Is Not Sterile: History and Current Discoveries on the Urinary Microbiome

Krystal Thomas-White et al.

CURRENT BLADDER DYSFUNCTION REPORTS (2016)

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Article Medicine, Legal

Evaluation of DNA Degradation Using Flow Cytometry Promising Tool for Postmortem Interval Determination

Teddric Williams et al.

AMERICAN JOURNAL OF FORENSIC MEDICINE AND PATHOLOGY (2015)

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Article Medicine, Legal

Estimating Time Since Death from Postmortem Human Gut Microbial Communities

Kathleen A. Hauther et al.

JOURNAL OF FORENSIC SCIENCES (2015)

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Article Toxicology

Promising blood-derived biomarkers for estimation of the postmortem interval

Isabel Costa et al.

TOXICOLOGY RESEARCH (2015)

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Article Immunology

Gut microbiota and immunity: possible role in sudden infant death syndrome

Paul N. Goldwater

FRONTIERS IN IMMUNOLOGY (2015)

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Article Microbiology

Microbiota of the indoor environment: a meta-analysis

Rachel I. Adams et al.

MICROBIOME (2015)

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Article Microbiology

Forensic analysis of the microbiome of phones and shoes

Simon Lax et al.

MICROBIOME (2015)

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Article Medicine, Legal

Initial insights into bacterial succession during human decomposition

Embriette R. Hyde et al.

INTERNATIONAL JOURNAL OF LEGAL MEDICINE (2015)

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Article Biotechnology & Applied Microbiology

Vertebrate Decomposition Is Accelerated by Soil Microbes

Christian L. Lauber et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)

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Article Microbiology

The gut microbiota of Colombians differs from that of Americans, Europeans and Asians

Juan S. Escobar et al.

BMC MICROBIOLOGY (2014)

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Article Medicine, Legal

The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing

Jennifer L. Pechal et al.

INTERNATIONAL JOURNAL OF LEGAL MEDICINE (2014)

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Article Medicine, Legal

Effect of body mass and clothing on decomposition of pig carcasses

Szymon Matuszewski et al.

INTERNATIONAL JOURNAL OF LEGAL MEDICINE (2014)

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Article Microbiology

Gut microbiome in sudden infant death syndrome (SIDS) differs from that in healthy comparison babies and offers an explanation for the risk factor of prone position

Amanda R. Highet et al.

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2014)

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Review Microbiology

The Value of Postmortem Microbiology Cultures

Stefan Riedel

JOURNAL OF CLINICAL MICROBIOLOGY (2014)

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Article Biochemical Research Methods

Distinctive thanatomicrobiome signatures found in the blood and internal organs of humans

Ismail Can et al.

JOURNAL OF MICROBIOLOGICAL METHODS (2014)

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Article Biochemistry & Molecular Biology

Strain/species identification in metagenomes using genome-specific markers

Qichao Tu et al.

NUCLEIC ACIDS RESEARCH (2014)

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Article Biotechnology & Applied Microbiology

Temporal variability is a personalized feature of the human microbiome

Gilberto E. Flores et al.

GENOME BIOLOGY (2014)

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Article Medicine, Legal

Evaluation of Postmortem Bacterial Migration Using Culturing and Real-Time Quantitative PCR

Sari Tuomisto et al.

JOURNAL OF FORENSIC SCIENCES (2013)

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Article Multidisciplinary Sciences

Correction: Profiling of RNA Degradation for Estimation of Post Morterm Interval

Fernanda Sampaio-Silva et al.

PLoS One (2013)

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Article Multidisciplinary Sciences

The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition

Embriette R. Hyde et al.

PLOS ONE (2013)

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Article Multidisciplinary Sciences

Biochemistry Changes That Occur after Death: Potential Markers for Determining Post-Mortem Interval

Andrea E. Donaldson et al.

PLOS ONE (2013)

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Review Toxicology

Forensic toxicology in drug-facilitated sexual assault

Ricardo Jorge Dinis-Oliveira et al.

TOXICOLOGY MECHANISMS AND METHODS (2013)

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Article Biology

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system

Jessica L. Metcalf et al.

ELIFE (2013)

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Article Medicine, Legal

A new molecular approach to help conclude drowning as a cause of death: Simultaneous detection of eight bacterioplankton species using real-time PCR assays with TaqMan probes

Taketo Uchiyama et al.

FORENSIC SCIENCE INTERNATIONAL (2012)

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Article Medicine, Legal

Detection of diverse aquatic microbes in blood and organs of drowning victims: First metagenomic approach using high-throughput 454-pyrosequencing

Eiji Kakizaki et al.

FORENSIC SCIENCE INTERNATIONAL (2012)

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Article Gastroenterology & Hepatology

Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease

Derrick E. Fouts et al.

JOURNAL OF HEPATOLOGY (2012)

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Article Multidisciplinary Sciences

Structure, function and diversity of the healthy human microbiome

Curtis Huttenhower et al.

NATURE (2012)

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Article Multidisciplinary Sciences

Comprehensive Postmortem Analyses of Intestinal Microbiota Changes and Bacterial Translocation in Human Flora Associated Mice

Markus M. Heimesaat et al.

PLOS ONE (2012)

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Article Medicine, Legal

Detection of marine and freshwater bacterioplankton in immersed victims: Post-mortem bacterial invasion does not readily occur

Eiji Kakizaki et al.

FORENSIC SCIENCE INTERNATIONAL (2011)

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Review Microbiology

The skin microbiome

Elizabeth A. Grice et al.

NATURE REVIEWS MICROBIOLOGY (2011)

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Article Microbiology

The Human Oral Microbiome

Floyd E. Dewhirst et al.

JOURNAL OF BACTERIOLOGY (2010)

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Article Multidisciplinary Sciences

Topographical and Temporal Diversity of the Human Skin Microbiome

Elizabeth A. Grice et al.

SCIENCE (2009)

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Article Multidisciplinary Sciences

Bacterial Community Variation in Human Body Habitats Across Space and Time

Elizabeth K. Costello et al.

SCIENCE (2009)

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Article Soil Science

Temperature affects microbial decomposition of cadavers (Rattus rattus) in contrasting soils

David O. Carter et al.

APPLIED SOIL ECOLOGY (2008)

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Article Multidisciplinary Sciences

The Human Microbiome Project

Peter J. Turnbaugh et al.

NATURE (2007)

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Review Multidisciplinary Sciences

Cadaver decomposition in terrestrial ecosystems

David O. Carter et al.

NATURWISSENSCHAFTEN (2007)

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Review Gastroenterology & Hepatology

Bacterial translocation: Overview of mechanisms and clinical impact

Silvio Balzan et al.

JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY (2007)

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Article Medicine, Legal

Drowning: Still a difficult autopsy diagnosis

Michel H. A. Piette et al.

FORENSIC SCIENCE INTERNATIONAL (2006)

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Review Pathology

Postmortem bacteriology: a re-evaluation

JA Morris et al.

JOURNAL OF CLINICAL PATHOLOGY (2006)

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Review Multidisciplinary Sciences

Forensic entomology

J Amendt et al.

NATURWISSENSCHAFTEN (2004)

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Article Medicine, Legal

Diagnosing death by drowning in fresh water using blood strontium as an indicator

JE Azparren et al.

FORENSIC SCIENCE INTERNATIONAL (2003)

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