相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
Yu-Wei Wu et al.
BIOINFORMATICS (2016)
Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla
Joanne B. Emerson et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA
Takashi Yamano et al.
CELL (2016)
The crystal structure of Cpf1 in complex with CRISPR RNA
De Dong et al.
NATURE (2016)
Profiling of engineering hotspots identifies an allosteric CRISPR-Cas9 switch
Benjamin L. Oakes et al.
NATURE BIOTECHNOLOGY (2016)
Applications of CRISPR technologies in research and beyond
Rodolphe Barrangou et al.
NATURE BIOTECHNOLOGY (2016)
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2016)
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
Omar O. Abudayyeh et al.
SCIENCE (2016)
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
Karthik Anantharaman et al.
NATURE COMMUNICATIONS (2016)
Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems
David Burstein et al.
NATURE COMMUNICATIONS (2016)
Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System
Bernd Zetsche et al.
CELL (2015)
DNase H Activity of Neisseria meningitidis Cas9
Yan Zhang et al.
MOLECULAR CELL (2015)
Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems
Sergey Shmakov et al.
MOLECULAR CELL (2015)
Integrase-mediated spacer acquisition during CRISPR-Cas adaptive immunity
James K. Nunez et al.
NATURE (2015)
Unusual biology across a group comprising more than 15% of domain Bacteria
Christopher T. Brown et al.
NATURE (2015)
CRISPR adaptation biases explain preference for acquisition of foreign DNA
Asaf Levy et al.
NATURE (2015)
The Phyre2 web portal for protein modeling, prediction and analysis
Lawrence A. Kelley et al.
NATURE PROTOCOLS (2015)
An updated evolutionary classification of CRISPR-Cas systems
Kira S. Makarova et al.
NATURE REVIEWS MICROBIOLOGY (2015)
JPred4: a protein secondary structure prediction server
Alexey Drozdetskiy et al.
NUCLEIC ACIDS RESEARCH (2015)
Diverse uncultivated ultra-small bacterial cells in groundwater
Birgit Luef et al.
NATURE COMMUNICATIONS (2015)
The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle
William C. Nelson et al.
FRONTIERS IN MICROBIOLOGY (2015)
UniProt: a hub for protein information
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease
Carolin Anders et al.
NATURE (2014)
Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity
James K. Nunez et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2014)
Classification and evolution of type II CRISPR-Cas systems
Krzysztof Chylinski et al.
NUCLEIC ACIDS RESEARCH (2014)
Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea
Alexis P. Yelton et al.
BMC GENOMICS (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Processing-Independent CRISPR RNAs Limit Natural Transformation in Neisseria meningitidis
Yan Zhang et al.
MOLECULAR CELL (2013)
Insights into the phylogeny and coding potential of microbial dark matter
Christian Rinke et al.
NATURE (2013)
Orthogonal Cas9 proteins for RNA-guided gene regulation and editing
Kevin M. Esvelt et al.
NATURE METHODS (2013)
Crass: identification and reconstruction of CRISPR from unassembled metagenomic data
Connor T. Skennerton et al.
NUCLEIC ACIDS RESEARCH (2013)
Protospacer recognition motifs: Mixed identities and functional diversity
Shiraz A. Shah et al.
RNA BIOLOGY (2013)
Genomes from Metagenomics
Itai Sharon et al.
SCIENCE (2013)
Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla
Rose S. Kantor et al.
MBIO (2013)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
Yu Peng et al.
BIOINFORMATICS (2012)
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
Michael Remmert et al.
NATURE METHODS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
Ido Yosef et al.
NUCLEIC ACIDS RESEARCH (2012)
Mechanism of substrate selection by a highly specific CRISPR endoribonuclease
Samuel H. Sternberg et al.
RNA (2012)
In Situ Evolutionary Rate Measurements Show Ecological Success of Recently Emerged Bacterial Hybrids
Vincent J. Denef et al.
SCIENCE (2012)
A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity
Martin Jinek et al.
SCIENCE (2012)
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
Elitza Deltcheva et al.
NATURE (2011)
HMMER web server: interactive sequence similarity searching
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2011)
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
Christopher S. Miller et al.
GENOME BIOLOGY (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Enigmatic, ultrasmall, uncultivated Archaea
Brett J. Baker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Self-targeting by CRISPR: gene regulation or autoimmunity?
Adi Stern et al.
TRENDS IN GENETICS (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Interaction between Bacteriophage DMS3 and Host CRISPR Region Inhibits Group Behaviors of Pseudomonas aeruginosa
Michael E. Zegans et al.
JOURNAL OF BACTERIOLOGY (2009)
Enzymatic assembly of DNA molecules up to several hundred kilobases
Daniel G. Gibson et al.
NATURE METHODS (2009)
Community-wide analysis of microbial genome sequence signatures
Gregory J. Dick et al.
GENOME BIOLOGY (2009)
CRISPR - a widespread system that provides acquired resistance against phages in bacteria and archaea
Rotem Sorek et al.
NATURE REVIEWS MICROBIOLOGY (2008)
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
Ibtissem Grissa et al.
NUCLEIC ACIDS RESEARCH (2007)
CRISPR provides acquired resistance against viruses in prokaryotes
Rodolphe Barrangou et al.
SCIENCE (2007)
Lineages of acidophilic archaea revealed by community genomic analysis
Brett J. Baker et al.
SCIENCE (2006)
A distinct small RNA pathway silences selfish genetic elements in the germline
Vasily V. Vagin et al.
SCIENCE (2006)
The repetitive DNA elements called CRISPRs and their associated genes: Evidence of horizontal transfer among prokaryotes
James S. Godde et al.
JOURNAL OF MOLECULAR EVOLUTION (2006)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
Versatile and open software for comparing large genomes
S Kurtz et al.
GENOME BIOLOGY (2004)
Mfold web server for nucleic acid folding and hybridization prediction
M Zuker
NUCLEIC ACIDS RESEARCH (2003)
An efficient algorithm for large-scale detection of protein families
AJ Enright et al.
NUCLEIC ACIDS RESEARCH (2002)
分享论文
