相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Architecture of the RNA polymerase II-Mediator core initiation complex
C. Plaschka et al.
NATURE (2015)
The I-TASSER Suite: protein structure and function prediction
Jianyi Yang et al.
NATURE METHODS (2015)
Cytoplasmic TAF2-TAF8-TAF10 complex provides evidence for nuclear holo-TFIID assembly from preformed submodules
Simon Trowitzsch et al.
NATURE COMMUNICATIONS (2015)
Subunit Architecture and Functional Modular Rearrangements of the Transcriptional Mediator Complex
Kuang-Lei Tsai et al.
CELL (2014)
Looping Back to Leap Forward: Transcription Enters a New Era
Michael Levine et al.
CELL (2014)
Crystal structure of a TAF1-TAF7 complex in human transcription factor IID reveals a promoter binding module
Hui Wang et al.
CELL RESEARCH (2014)
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
Marco Biasini et al.
NUCLEIC ACIDS RESEARCH (2014)
Beam-induced motion correction for sub-megadalton cryo-EM particles
Sjors H. W. Scheres
ELIFE (2014)
Structural bioinformatics of the general transcription factor TFIID
Maja Malkowska et al.
BIOCHIMIE (2013)
Human TFIID Binds to Core Promoter DNA in a Reorganized Structural State
Michael A. Cianfrocco et al.
CELL (2013)
Random Coordinate Descent with Spinor-matrices and Geometric Filters for Efficient Loop Closure
Pieter Chys et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)
iMODFIT: Efficient and robust flexible fitting based on vibrational analysis in internal coordinates
Jose Ramon Lopez-Blanco et al.
JOURNAL OF STRUCTURAL BIOLOGY (2013)
The architecture of human general transcription factor TFIID core complex
Christoph Bieniossek et al.
NATURE (2013)
Structural visualization of key steps in human transcription initiation
Yuan He et al.
NATURE (2013)
Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM
Xueming Li et al.
NATURE METHODS (2013)
High-resolution structure of TBP with TAF1 reveals anchoring patterns in transcriptional regulation
Madhanagopal Anandapadamanaban et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
Scalable web services for the PSIPRED Protein Analysis Workbench
Daniel W. A. Buchan et al.
NUCLEIC ACIDS RESEARCH (2013)
TAF7 Traffic controller in transcription initiation
Anne Gegonne et al.
TRANSCRIPTION-AUSTIN (2013)
Transcription initiation by human RNA polymerase II visualized at single-molecule resolution
Andrey Revyakin et al.
GENES & DEVELOPMENT (2012)
TFIID TAF6-TAF9 Complex Formation Involves the HEAT Repeat-containing C-terminal Domain of TAF6 and Is Modulated by TAF5 Protein
Elisabeth Scheer et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
RELION: Implementation of a Bayesian approach to cryo-EM structure determination
Sjors H. W. Scheres
JOURNAL OF STRUCTURAL BIOLOGY (2012)
Outcome of the First Electron Microscopy Validation Task Force Meeting
Richard Henderson et al.
STRUCTURE (2012)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
Fabian Sievers et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Crystal structures of the endoplasmic reticulum aminopeptidase-1 (ERAP1) reveal the molecular basis for N-terminal peptide trimming
Grazyna Kochan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Automated minimization of steric clashes in protein structures
Srinivas Ramachandran et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)
PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta
Sidhartha Chaudhury et al.
BIOINFORMATICS (2010)
RNA Polymerase II and TAFs Undergo a Slow Isomerization after the Polymerase Is Recruited to Promoter-Bound TFIID
Petro Yakovchuk et al.
JOURNAL OF MOLECULAR BIOLOGY (2010)
Three Key Subregions Contribute to the Function of the Downstream RNA Polymerase II Core Promoter
Joshua W. M. Theisen et al.
MOLECULAR AND CELLULAR BIOLOGY (2010)
TFIIA and the transactivator Rap1 cooperate to commit TFIID for transcription initiation
Gabor Papai et al.
NATURE (2010)
Appion: An integrated, database-driven pipeline to facilitate EM image processing
Gabriel C. Lander et al.
JOURNAL OF STRUCTURAL BIOLOGY (2009)
DoG Picker and TiltPicker: Software tools to facilitate particle selection in single particle electron microscopy
N. R. Voss et al.
JOURNAL OF STRUCTURAL BIOLOGY (2009)
3D-DART: a DNA structure modelling server
Marc van Dijk et al.
NUCLEIC ACIDS RESEARCH (2009)
Structural changes in TAF4b-TFIID correlate with promoter selectivity
Wei-Li Liu et al.
MOLECULAR CELL (2008)
The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes
Bong Kim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Conserved region I of human coactivator TAF4 binds to a short hydrophobic motif present in transcriptional regulators
Xiaoping Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
ADP_EM:: fast exhaustive multi-resolution docking for high-throughput coverage
Jose Ignacio Garzon et al.
BIOINFORMATICS (2007)
Structural analysis and dimerization potential of the human TAF5 subunit of TFIID
Suparna Bhattacharya et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Rational design of a super core promoter that enhances gene expression
Tamar Juven-Gershon et al.
NATURE METHODS (2006)
TAF4 nucleates a core subcomplex of TFIID and mediates activated transcription from a TATA-less promoter
Kevin J. Wright et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Genome-wide analysis of mammalian promoter architecture and evolution
Piero Carninci et al.
NATURE GENETICS (2006)
The general transcription machinery and general cofactors
Mary C. Thomas et al.
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2006)
Cryo-electron microscopy studies of human TFIID: Conformational breathing in the integration of gene regulatory cues
P Grob et al.
STRUCTURE (2006)
Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome
SJ Cooper et al.
GENOME RESEARCH (2006)
Functional characterization of core promoter elements: the downstream core element is recognized by TAF1
DH Lee et al.
MOLECULAR AND CELLULAR BIOLOGY (2005)
A high-resolution map of active promoters in the human genome
TH Kim et al.
NATURE (2005)
The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II
M Pal et al.
MOLECULAR CELL (2005)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes
M Bleichenbacher et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Accurate determination of local defocus and specimen tilt in electron microscopy
JA Mindell et al.
JOURNAL OF STRUCTURAL BIOLOGY (2003)
Crystal structure of a subcomplex of human transcription factor TFIID formed by TATA binding protein-associated factors hTAF4 (hTAFII135) and hTAF12 (hTAFII20)
S Werten et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Mapping histone fold TAFs within yeast TFIID
C Leurent et al.
EMBO JOURNAL (2002)
TATA-binding protein-associated factors enhance the recruitment of RNA polymerase II by transcriptional activators.
SY Wu et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Identification of hTAFII80δ links apoptotic signaling pathways to transcription factor TFIID function
B Bell et al.
MOLECULAR CELL (2001)
TFIIA interacts with TFIID via association with TATA-binding protein and TAF40
SM Kraemer et al.
MOLECULAR AND CELLULAR BIOLOGY (2001)
Bsoft: Image and molecular processing in electron microscopy
JB Heymann
JOURNAL OF STRUCTURAL BIOLOGY (2001)
Structure and function of a human TAFII250 double bromodomain module
RH Jacobson et al.
SCIENCE (2000)
Winged helix proteins
KS Gajiwala et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2000)
TAFs revisited: more data reveal new twists and confirm old ideas
SR Albright et al.
GENE (2000)