4.6 Article

Identifying Cancer Type-Specific Transcriptional Programs through Network Analysis

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Pancancer survival analysis of cancer hallmark genes

Adam Nagy et al.

Summary: This study aimed to estimate the prognostic effect of cancer hallmark genes in multiple distinct cancer types. The results showed significant heterogeneity and tissue specificity in the correlation between these genes and survival, providing valuable information for future targeted therapy development in solid tumors.

SCIENTIFIC REPORTS (2021)

Article Health Care Sciences & Services

Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation

Andras Lanczky et al.

Summary: The web-based tool introduced in this study enables univariate and multivariate Cox proportional hazards survival analysis using data from various genomic studies, filling a significant gap in the field where no commonly used spreadsheet software or web server is available for this purpose.

JOURNAL OF MEDICAL INTERNET RESEARCH (2021)

Article Multidisciplinary Sciences

A high-resolution 3D epigenomic map reveals insights into the creation of the prostate cancer transcriptome

Suhn Kyong Rhie et al.

NATURE COMMUNICATIONS (2019)

Review Biochemistry & Molecular Biology

Potential application of cell reprogramming techniques for cancer research

Shigeo Saito et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2019)

Article Genetics & Heredity

Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci

Fredrick R. Schumacher et al.

NATURE GENETICS (2018)

Article Biochemistry & Molecular Biology

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible

Damian Szklarczyk et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemical Research Methods

Assessment of engineered cells using CellNet and RNA-seq

Arthur H. Radley et al.

NATURE PROTOCOLS (2017)

Article Biochemistry & Molecular Biology

Defining a Cancer Dependency Map

Aviad Tsherniak et al.

Article Biochemical Research Methods

Integrated web visualizations for protein-protein interaction databases

Fleur Jeanquartier et al.

BMC BIOINFORMATICS (2015)

Article Genetics & Heredity

A Gene Regulatory Program in Human Breast Cancer

Renhua Li et al.

GENETICS (2015)

Article Multidisciplinary Sciences

Two susceptibility loci identified for prostate cancer aggressiveness

Sonja I. Berndt et al.

NATURE COMMUNICATIONS (2015)

Article Biochemistry & Molecular Biology

Dissecting Engineered Cell Types and Enhancing Cell Fate Conversion via CellNet

Samantha A. Morris et al.

Article Biochemistry & Molecular Biology

CellNet: Network Biology Applied to Stem Cell Engineering

Patrick Cahan et al.

Article Genetics & Heredity

A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer

Ali Amin Al Olama et al.

NATURE GENETICS (2014)

Article Urology & Nephrology

Reprogramming of Prostate Cancer Cells - Technical Challenges

Gisely T. Borges et al.

CURRENT UROLOGY REPORTS (2014)

Article Biochemical Research Methods

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

Edward Y. Chen et al.

BMC BIOINFORMATICS (2013)

Review Multidisciplinary Sciences

Tumour heterogeneity and cancer cell plasticity

Corbin E. Meacham et al.

NATURE (2013)

Article Mathematical & Computational Biology

ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells

Huilei Xu et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2013)

Article Oncology

Hypoxia and TP53 deficiency for induced pluripotent stern cell-like properties in gastrointestinal cancer

Hiromitsu Hoshino et al.

INTERNATIONAL JOURNAL OF ONCOLOGY (2012)

Article Biotechnology & Applied Microbiology

An encyclopedia of mouse DNA elements (Mouse ENCODE)

John A. Stamatoyannopoulos et al.

GENOME BIOLOGY (2012)

Article Oncology

HIF Induces Human Embryonic Stem Cell Markers in Cancer Cells

Julie Mathieu et al.

CANCER RESEARCH (2011)

Article Multidisciplinary Sciences

Direct conversion of mouse fibroblasts to hepatocyte-like cells by defined factors

Sayaka Sekiya et al.

NATURE (2011)

Article Multidisciplinary Sciences

Generation of mouse ES cell lines engineered for the forced induction of transcription factors

Lina S. Correa-Cerro et al.

SCIENTIFIC REPORTS (2011)

Article Biochemical Research Methods

ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments

Alexander Lachmann et al.

BIOINFORMATICS (2010)

Article Hematology

Generation of iPSCs from cultured human malignant cells

Jan E. Carette et al.

Article Biochemistry & Molecular Biology

Direct Reprogramming of Fibroblasts into Functional Cardiomyocytes by Defined Factors

Masaki Ieda et al.

Article Cell & Tissue Engineering

Reprogramming of T Cells from Human Peripheral Blood

Yuin-Han Loh et al.

CELL STEM CELL (2010)

Article Cell & Tissue Engineering

Reprogramming of Human Peripheral Blood Cells to Induced Pluripotent Stem Cells

Judith Staerk et al.

CELL STEM CELL (2010)

Article Multidisciplinary Sciences

Direct conversion of human fibroblasts to multilineage blood progenitors

Eva Szabo et al.

NATURE (2010)

Article Multidisciplinary Sciences

Direct conversion of fibroblasts to functional neurons by defined factors

Thomas Vierbuchen et al.

NATURE (2010)

Article Multidisciplinary Sciences

Defined factors induce reprogramming of gastrointestinal cancer cells

Norikatsu Miyoshi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Oct4-Induced Pluripotency in Adult Neural Stem Cells

Jeong Beom Kim et al.

Article Biotechnology & Applied Microbiology

Efficient and rapid generation of induced pluripotent stem cells from human keratinocytes

Trond Aasen et al.

NATURE BIOTECHNOLOGY (2008)

Article Genetics & Heredity

Multiple loci identified in a genome-wide association study of prostate cancer

Gilles Thomas et al.

NATURE GENETICS (2008)

Article Multidisciplinary Sciences

Maps of random walks on complex networks reveal community structure

Martin Rosvall et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Multidisciplinary Sciences

Gene regulatory networks and the evolution of animal body plans

EH Davidson et al.

SCIENCE (2006)

Article Biochemical Research Methods

Reverse engineering cellular networks

Adam A. Margolin et al.

NATURE PROTOCOLS (2006)