4.4 Article

Emergence of Phytobacter diazotrophicus carrying an IncA/C2 plasmid harboring blaNDM-1 in Tokyo, Japan

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Infectious Diseases

Resolving taxonomic confusion: establishing the genus Phytobacter on the list of clinically relevant Enterobacteriaceae

Theo H. M. Smits et al.

Summary: With improvements in genomics, it is now possible to accurately identify clinical isolates at the species level and analyze past occurrences of specific organisms. This approach can aid in the classification of clinically relevant taxa that have previously gone unrecognized in clinical diagnostics.

EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2022)

Article Microbiology

Molecular Characterization of blaNDM-Carrying IncX3 Plasmids: blaNDM-16b Likely Emerged from a Mutation of blaNDM-5 on IncX3 Plasmid

Tsukasa Ariyoshi et al.

Summary: This study characterized a bla(NDM-16b)-carrying IncX3 plasmid in an Escherichia coli strain isolated from a hospital inpatient in Tokyo, Japan. The plasmid differed in sequence from previously reported bla(NDM) variants and showed high resistance to beta-lactam antimicrobials except for aztreonam.

MICROBIOLOGY SPECTRUM (2022)

Review Microbiology

Summary of Novel Bacterial Isolates Derived from Human Clinical Specimens and Nomenclature Revisions Published in 2018 and 2019

Erik Munson et al.

Summary: Understanding novel prokaryotic taxon discovery and nomenclature revisions is crucial for clinical microbiology laboratory practice, infectious disease epidemiology, and microbial pathogenesis studies. Recent summaries of taxonomic designations and revisions have included changes in several bacterial genera, highlighting the need for further efforts to determine their clinical relevance and support.

JOURNAL OF CLINICAL MICROBIOLOGY (2021)

Review Microbiology

The Changing Face of the Family Enterobacteriaceae (Order: Enterobacterales): New Members, Taxonomic Issues, Geographic Expansion, and New Diseases and Disease

J. Michael Janda et al.

Summary: The family Enterobacteriaceae has undergone significant morphogenetic changes in the past 20 years, with the global range of enterobacteria being more expansive than previously recognized. New species have been described in humans, and molecular studies suggest a possible division of the current family into seven or more separate families.

CLINICAL MICROBIOLOGY REVIEWS (2021)

Review Microbiology

Epidemiology of beta-Lactamase-Producing Pathogens

Karen Bush et al.

CLINICAL MICROBIOLOGY REVIEWS (2020)

Review Microbiology

NDM Metallo-β-Lactamases and Their Bacterial Producers in Health Care Settings

Wenjing Wu et al.

CLINICAL MICROBIOLOGY REVIEWS (2019)

Article Multidisciplinary Sciences

TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy

Jan P. Meier-Kolthoff et al.

NATURE COMMUNICATIONS (2019)

Article Biochemical Research Methods

NanoPack: visualizing and processing long-read sequencing data

Wouter De Coster et al.

BIOINFORMATICS (2018)

Article Microbiology

Emended description of the genus Phytobacter, its type species Phytobacter diazotrophicus (Zhang 2008) and description of Phytobacter ursingii sp nov.

Marcelo Pillonetto et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)

Article Biochemical Research Methods

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

Ryan R. Wick et al.

PLOS COMPUTATIONAL BIOLOGY (2017)

Article Biochemistry & Molecular Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Biochemical Research Methods

Roary: rapid large-scale prokaryote pan genome analysis

Andrew J. Page et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Prokka: rapid prokaryotic genome annotation

Torsten Seemann

BIOINFORMATICS (2014)

Article Microbiology

Genetic Features of the Widespread Plasmid Coding for the Carbapenemase OXA-48

Laurent Poirel et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2012)

Article Infectious Diseases

Identification of acquired antimicrobial resistance genes

Ea Zankari et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Biochemical Research Methods

Interactive microbial genome visualization with GView

Aaron Petkau et al.

BIOINFORMATICS (2010)

Article Microbiology

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

Johan Goris et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)