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Andre Mateus et al.
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Dorothee Liebschner et al.
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The BioCyc collection of microbial genomes and metabolic pathways
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Database resources of the National Center for Biotechnology Information
Richa Agarwala et al.
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Ariane Briegel et al.
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Anisia J. Silva et al.
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MicrobeJ, a tool for high throughput bacterial cell detection and quantitative analysis
Adrien Ducret et al.
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So-ichiro Nishiyama et al.
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Tabitha Bucher et al.
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R. Colin et al.
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REFMAC5 for the refinement of macromolecular crystal structures
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Felipe Cava et al.
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Jalview Version 2-a multiple sequence alignment editor and analysis workbench
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Markus A. Boin et al.
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Phaser crystallographic software
Airlie J. McCoy et al.
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Alex Toftgaard Nielsen et al.
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LE Ulrich et al.
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RC Edgar
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V Sourjik
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JF Heidelberg et al.
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M Schuster et al.
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