4.4 Article

Whole-genome sequence analysis of carbapenem-resistant Enterobacteriaceae recovered from hospitalized patients

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Infectious Diseases

Detection and genomic characterization of mcr-9 in Enterobacter hormaechei recovered from a pediatric patient in Lebanon

Ragheed Khodor et al.

Summary: This study detected and characterized the mcr-9 gene in a colistin-susceptible Enterobacter hormaechei isolate from a pediatric patient in Lebanon. The gene was found to be chromosomal and related to the QseCB regulatory system. The silent spread of mcr-9 in the globally successful ST-78 Enterobacter lineage is concerning and requires close monitoring.

INFECTION GENETICS AND EVOLUTION (2021)

Article Infectious Diseases

Molecular characterization of a carbapenem-resistant Enterobacter hormaechei ssp. xiangfangensis co-harbouring blaNDM-1 and a chromosomally encoded phage-linked blaCTX-M-15 genes

Jana Makhlouf et al.

Summary: This study provides a comprehensive molecular characterization of a carbapenem-resistant E. hormaechei ssp. xiangfangensis strain, identifying multiple resistance genes integrated within phages and plasmids. The findings highlight the emergence of multi-drug resistant Enterobacter cloacae complex members in clinical settings, emphasizing the importance of monitoring their dissemination.

INFECTION GENETICS AND EVOLUTION (2021)

Article Infectious Diseases

First Report of OXA-181-Producing Klebsiella pneumoniae in China

Congcong Liu et al.

INFECTION AND DRUG RESISTANCE (2020)

Article Multidisciplinary Sciences

Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae

Sophia David et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Public, Environmental & Occupational Health

A compilation of antimicrobial susceptibility data from a network of 13 Lebanese hospitals reflecting the national situation during 2015-2016

Rima Moghnieh et al.

ANTIMICROBIAL RESISTANCE AND INFECTION CONTROL (2019)

Article Infectious Diseases

Epidemic IncX3 plasmids spreading carbapenemase genes in the United Arab Emirates and worldwide

Shaimaa F. Mouftah et al.

INFECTION AND DRUG RESISTANCE (2019)

Review Multidisciplinary Sciences

Plasmid evolution in carbapenemase-producing Enterobacteriaceae: a review

Katlego Kopotsa et al.

ANNALS OF THE NEW YORK ACADEMY OF SCIENCES (2019)

Review Infectious Diseases

Present and Future of Carbapenem-resistant Enterobacteriaceae (CRE) Infections

Beatriz Suay-Garcia et al.

ANTIBIOTICS-BASEL (2019)

Article Infectious Diseases

Epidemiology and susceptibility profiles of diabetic foot infections in five hospitals in Lebanon

Michele Obeid et al.

JOURNAL OF INFECTION IN DEVELOPING COUNTRIES (2018)

Letter Infectious Diseases

First report of an Escherichia coli from Lebanon carrying an OXA-181 carbapenemase resistance determinant

Ibrahim Bitar et al.

JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE (2018)

Article Infectious Diseases

Early emergence of OXA-181-producing Escherichia coli ST410 in China

Shangshang Qin et al.

JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE (2018)

Review Infectious Diseases

Antibiotic resistance: a rundown of a global crisis

Bilal Aslam et al.

INFECTION AND DRUG RESISTANCE (2018)

Article Microbiology

Co-production of NDM-1 and OXA-232 by ST16 Klebsiella pneumoniae, Italy, 2016

Manuela Avolio et al.

FUTURE MICROBIOLOGY (2017)

Article Biochemical Research Methods

plasmidSPAdes: assembling plasmids from whole genome sequencing data

Dmitry Antipov et al.

BIOINFORMATICS (2016)

Article Infectious Diseases

Surveillance of antimicrobial resistance in Lebanese hospitals: retrospective nationwide compiled data

Kamal Chamoun et al.

INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2016)

Article Infectious Diseases

High prevalence of international ESBL CTX-M-15-producing Enterobacter cloacae ST114 clone in animals

Marisa Haenni et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2016)

Article Biochemical Research Methods

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

Ryan R. Wick et al.

BIOINFORMATICS (2015)

Article Microbiology

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

Katrine G. Joensen et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2015)

Article Public, Environmental & Occupational Health

Antimicrobial resistance: one world, one fight!

Stephan Harbarth et al.

ANTIMICROBIAL RESISTANCE AND INFECTION CONTROL (2015)

Article Public, Environmental & Occupational Health

Prevalence of Staphylococcus aureus methicillin-sensitive and methicillin-resistant nasal and pharyngeal colonization in outpatients in Lebanon

Maroun Sfeir et al.

AMERICAN JOURNAL OF INFECTION CONTROL (2014)

Article Microbiology

In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

Alessandra Carattoli et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)

Article Infectious Diseases

Detection of NDM-7 in Germany, a new variant of the New Delhi metallo-β-lactamase with increased carbapenemase activity

Stephan Goettig et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2013)

Article Multidisciplinary Sciences

First Identification of Novel NDM Carbapenemase, NDM-7, in Escherichia coli in France

Gaelle Cuzon et al.

PLOS ONE (2013)

Article Microbiology

Genetic Features of the Widespread Plasmid Coding for the Carbapenemase OXA-48

Laurent Poirel et al.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2012)

Article Infectious Diseases

Rapid emergence and spread of OXA-48-producing carbapenem-resistant Enterobacteriaceae isolates in Belgian hospitals

Youri Glupczynski et al.

INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2012)

Review Infectious Diseases

OXA-48-like carbapenemases: the phantom menace

Laurent Poirel et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)

Article Infectious Diseases

Identification of acquired antimicrobial resistance genes

Ea Zankari et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)

Article Microbiology

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Mette V. Larsen et al.

JOURNAL OF CLINICAL MICROBIOLOGY (2012)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Review Microbiology

CTX-M enzymes: origin and diffusion

Rafael Canton et al.

FRONTIERS IN MICROBIOLOGY (2012)

Article Infectious Diseases

The threat of carbapenem-resistant Enterobacteriaceae in Lebanon: An update on the regional and local epidemiology

Rima I. El-Herte et al.

Journal of Infection and Public Health (2012)

Article Biochemical Research Methods

Easyfig: a genome comparison visualizer

Mitchell J. Sullivan et al.

BIOINFORMATICS (2011)

Article Infectious Diseases

Multiplex PCR for detection of acquired carbapenemase genes

Laurent Poirel et al.

DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2011)

Article Immunology

Global Spread of Carbapenemase-producing Enterobacteriaceae

Patrice Nordmann et al.

EMERGING INFECTIOUS DISEASES (2011)

Article Public, Environmental & Occupational Health

Spread of OXA-48-mediated resistance to carbapenems in Lebanese Klebsiella pneumoniae and Escherichia coli that produce extended spectrum β-lactamase

G. M. Matar et al.

ANNALS OF TROPICAL MEDICINE AND PARASITOLOGY (2010)

Article Infectious Diseases

Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants

Laura Villa et al.

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2010)

Article Biotechnology & Applied Microbiology

Characterization of Multidrug Resistant ESBL-Producing Escherichia coli Isolates from Hospitals in Malaysia

King-Ting Lim et al.

JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY (2009)

Letter Infectious Diseases

Oxacillinase-mediated resistance to carbapenems in Klebsiella pneumoniae from Lebanon

G. M. Matar et al.

CLINICAL MICROBIOLOGY AND INFECTION (2008)

Article Biochemistry & Molecular Biology

The CGView Server: a comparative genomics tool for circular genomes

Jason R. Grant et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

ISfinder: the reference centre for bacterial insertion sequences

P. Siguier et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Mauve: Multiple alignment of conserved genomic sequence with rearrangements

ACE Darling et al.

GENOME RESEARCH (2004)