4.2 Article

Evolution of major flowering pathway integrators in Orchidaceae

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Agronomy

OsFTL4, an FT-like Gene, Regulates Flowering Time and Drought Tolerance in Rice (Oryza sativa L.)

Houwen Gu et al.

Summary: In this study, the researchers discovered that the OsFTL4 gene in rice plays an important role in both flowering and drought response.
Article Biochemistry & Molecular Biology

FRUITFULL-like genes regulate flowering time and inflorescence architecture in tomato

Xiaobing Jiang et al.

Summary: Tomato FUL-like genes FUL2 and MADS-BOX PROTEIN 20 (MBP20) promote the transition from vegetative to reproductive state and repress inflorescence branching by inducing floral meristem maturation. The control of inflorescence branching may be regulated by repression of transcription factors such as TOMATO MADS-box gene 3 (TM3) and APETALA 2b (AP2b). The tomato FUL-like proteins can form heterodimers with various MADS-domain proteins, potentially forming distinct complexes to regulate flowering time and inflorescence architecture.

PLANT CELL (2022)

Article Plant Sciences

TaVrt2, an SVP-like gene, cooperates with TaVrn1 to regulate vernalization-induced flowering in wheat

Li Xie et al.

Summary: TaVrt2 interacts with TaVrn1 in the vernalization pathway, both acting as flowering promoters, and showing significant physiological responses during vernalization.

NEW PHYTOLOGIST (2021)

Review Plant Sciences

Gene regulatory networks controlled by FLOWERING LOCUS C that confer variation in seasonal flowering and life history

Eva Madrid et al.

Summary: This study delves into the genetic basis of plants' reproductive responses to environmental cues and specifically focuses on the gene regulatory networks controlled by the FLC transcription factor. By examining FLC target genes and their role in flowering behaviors in response to vernalization and other cues, it sheds light on the mechanisms by which FLC represses gene transcription and provides insights into the developmental and physiological mechanisms that regulate floral transition.

JOURNAL OF EXPERIMENTAL BOTANY (2021)

Article Plant Sciences

OsFD4 promotes the rice floral transition via florigen activation complex formation in the shoot apical meristem

Martina Cerise et al.

Summary: Researchers have identified OsFD4 as a component of a FAC that promotes flowering at the shoot apical meristem, downstream of OsFD1. Different bZIP proteins orchestrate floral induction at the meristem, and FAC formation is largely combinatorial. Through protein-protein interactions and DNA-binding studies, it is shown that the bZIP proteins have discriminatory functions despite binding to the same consensus motif.

NEW PHYTOLOGIST (2021)

Article Plant Sciences

Comparative anatomy and genetic bases of fruit development in selected Rubiaceae (Gentianales)

Hector Salazar-Duque et al.

Summary: This study focused on the Rubiaceae plants and identified morpho-anatomical changes during fruit development, distinguishing those derived from the carpel versus the extra-carpellary tissues. Comparative analyses of gene evolution and expression patterns revealed that the Rubiaceae gene complement is simpler compared to Brassicaceae or Solanaceae, and gene expression varies in response to fruit type and developmental stage.

AMERICAN JOURNAL OF BOTANY (2021)

Article Biochemistry & Molecular Biology

Degree of Functional Divergence in Duplicates Is Associated with Distinct Roles in Plant Evolution

Akihiro Ezoe et al.

Summary: Gene duplication is a major mechanism for creating new genes in plants, resulting in duplicated genes with varying degrees of functional diversification. High diversified duplicates from tandem duplications tend to have lineage-specific functions, while low diversified duplicates from whole-genome duplications are related to essential signaling pathways, impacting plant evolution differently.

MOLECULAR BIOLOGY AND EVOLUTION (2021)

Article Plant Sciences

OsbZIP62/OsFD7, a functional ortholog of FLOWERING LOCUS D, regulates floral transition and panicle development in rice

Amarjot Kaur et al.

Summary: OsFD7, a rice bZIP protein-coding gene, is preferentially expressed in shoot apical meristem and during early panicle developmental stages. Unlike OsFD1, OsFD7 interacts directly and efficiently with OsFTLs, and is phosphorylated by OsCDPK41 and OsCDPK49, playing a dual role in floral transition and panicle development in rice.

JOURNAL OF EXPERIMENTAL BOTANY (2021)

Article Developmental Biology

Evolution and expression of the MADS-box flowering transition genes AGAMOUS-like 24/SHORT VEGETATIVE PHASE with emphasis in selected Neotropical orchids

Jessica A. Ramirez-Ramirez et al.

Summary: The study highlights the diverse roles of AGL24 and SVP in the flowering transition in angiosperms, with variations in different lineages. Independent duplication events in monocots have resulted in at least three clades of AGL24/SVP homologs, some specific to Orchidaceae. The analysis suggests higher evolutionary rates and potential pleiotropic roles of these genes in maintaining the vegetative phase and promoting flowering in different plant groups.

CELLS & DEVELOPMENT (2021)

Article Biochemistry & Molecular Biology

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Editorial Material Plant Sciences

Make it bloom! CONSTANS contributes to day neutrality in rose

Beatrice Denoyes et al.

JOURNAL OF EXPERIMENTAL BOTANY (2020)

Article Plant Sciences

Identification of Players Controlling Meristem Arrest Downstream of the FRUITFULL-APETALA2 Pathway

Irene Martinez-Fernandez et al.

PLANT PHYSIOLOGY (2020)

Article Multidisciplinary Sciences

TERMINAL FLOWER 1-FD complex target genes and competition with FLOWERING LOCUS T

Yang Zhu et al.

NATURE COMMUNICATIONS (2020)

Article Plant Sciences

FT Modulates Genome-Wide DNA-Binding of the bZIP Transcription Factor FD

Silvio Collani et al.

PLANT PHYSIOLOGY (2019)

Article Multidisciplinary Sciences

The MADS-box genes expressed in the inflorescence of Orchis italica (Orchidaceae)

Maria Carmen Valoroso et al.

PLOS ONE (2019)

Article Plant Sciences

Evolution and Diversification of FRUITFULL Genes in Solanaceae

Dinusha C. Maheepala et al.

FRONTIERS IN PLANT SCIENCE (2019)

Article Plant Sciences

The Arabidopsis thaliana CONSTANS-LIKE 4 (COL4) - A Modulator of Flowering Time

Yvonne Steinbach

FRONTIERS IN PLANT SCIENCE (2019)

Review Plant Sciences

Floral Induction and Flower Development of Orchids

Shan-Li Wang et al.

FRONTIERS IN PLANT SCIENCE (2019)

Article Plant Sciences

Inflorescence Meristem Fate Is Dependent on Seed Development and FRUITFULL in Arabidopsis thaliana

Vicente Balanza et al.

FRONTIERS IN PLANT SCIENCE (2019)

Article Biochemical Research Methods

MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

Kazutaka Katoh et al.

BRIEFINGS IN BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

UFBoot2: Improving the Ultrafast Bootstrap Approximation

Diep Thi Hoang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Plant Sciences

Evolution of genes associated with gynoecium patterning and fruit development in Solanaceae

Clara Ines Ortiz-Ramirez et al.

ANNALS OF BOTANY (2018)

Article Plant Sciences

Potato Tuber Induction is Regulated by Interactions Between Components of a Tuberigen Complex

Chin-Jit Teo et al.

PLANT AND CELL PHYSIOLOGY (2017)

Article Biochemical Research Methods

ModelFinder: fast model selection for accurate phylogenetic estimates

Subha Kalyaanamoorthy et al.

NATURE METHODS (2017)

Article Plant Sciences

Orchidstra 2.0-A Transcriptomics Resource for the Orchid Family

Ya-Ting Chao et al.

PLANT AND CELL PHYSIOLOGY (2017)

Article Biochemistry & Molecular Biology

Antagonistic Transcription Factor Complexes Modulate the Floral Transition in Rice

Vittoria Brambilla et al.

PLANT CELL (2017)

Article Multidisciplinary Sciences

Regulation of FT splicing by an endogenous cue in temperate grasses

Zhengrui Qin et al.

Nature Communications (2017)

Article Plant Sciences

Evolution and Expression Patterns of TCP Genes in Asparagales

Yesenia Madrigal et al.

FRONTIERS IN PLANT SCIENCE (2017)

Article Biochemistry & Molecular Biology

Current progress in orchid flowering/flower development research

Hsin-Mei Wang et al.

PLANT SIGNALING & BEHAVIOR (2017)

Article Plant Sciences

DOAP1 Promotes Flowering in the Orchid Dendrobium Chao Praya Smile

Nunchanoke Sawettalake et al.

FRONTIERS IN PLANT SCIENCE (2016)

Review Plant Sciences

Regulation of Flowering Time in Rice

Yang-Seok Lee et al.

JOURNAL OF PLANT BIOLOGY (2015)

Article Biochemistry & Molecular Biology

Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae

Samson Simon et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Biochemistry & Molecular Biology

The MEME Suite

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Functional Characterization of Phalaenopsis aphrodite Flowering Genes PaFT1 and PaFD

Seonghoe Jang et al.

PLOS ONE (2015)

Review Plant Sciences

How is FLC repression initiated by cold?

Chris A. Helliwell et al.

TRENDS IN PLANT SCIENCE (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Review Plant Sciences

Molecular control of seasonal flowering in rice, arabidopsis and temperate cereals

Roshi Shrestha et al.

ANNALS OF BOTANY (2014)

Article Biochemical Research Methods

AliView: a fast and lightweight alignment viewer and editor for large datasets

Anders Larsson

BIOINFORMATICS (2014)

Review Plant Sciences

The BBX family of plant transcription factors

Sreeramaiah N. Gangappa et al.

TRENDS IN PLANT SCIENCE (2014)

Article Plant Sciences

Evolution of fruit development genes in flowering plants

Natalia Pabon-Mora et al.

FRONTIERS IN PLANT SCIENCE (2014)

Article Plant Sciences

The Florigen Genes FT and TSF Modulate Lateral Shoot Outgrowth in Arabidopsis thaliana

Kazuhisa Hiraoka et al.

PLANT AND CELL PHYSIOLOGY (2013)

Review Plant Sciences

Grass Meristems II: Inflorescence Architecture, Flower Development and Meristem Fate

Wakana Tanaka et al.

PLANT AND CELL PHYSIOLOGY (2013)

Article Plant Sciences

OrchidBase 2.0: Comprehensive Collection of Orchidaceae Floral Transcriptomes

Wen-Chieh Tsai et al.

PLANT AND CELL PHYSIOLOGY (2013)

Review Plant Sciences

Structure and function of florigen and the receptor complex

Ken-ichiro Taoka et al.

TRENDS IN PLANT SCIENCE (2013)

Article Multidisciplinary Sciences

FLOWERING LOCUS C in monocots and the tandem origin of angiosperm-specific MADS-box genes

Philip Ruelens et al.

NATURE COMMUNICATIONS (2013)

Article Plant Sciences

Assessing duplication and loss of APETALA1/FRUITFULL homologs in Ranunculales

Natalia Pabon-Mora et al.

FRONTIERS IN PLANT SCIENCE (2013)

Article Cell Biology

Vernalization - a cold-induced epigenetic switch

Jie Song et al.

JOURNAL OF CELL SCIENCE (2012)

Article Plant Sciences

Potato CONSTANS is involved in photoperiodic tuberization in a graft-transmissible manner

Nahuel D. Gonzalez-Schain et al.

PLANT JOURNAL (2012)

Article Biochemistry & Molecular Biology

Functional conservation and diversification between rice OsMADS22/OsMADS55 and Arabidopsis SVP proteins

Jeong Hwan Lee et al.

PLANT SCIENCE (2012)

Article Multidisciplinary Sciences

Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development

Cezary Smaczniak et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

AGL24 acts in concert with SOC1 and FUL during Arabidopsis floral transition

Stefano Torti et al.

PLANT SIGNALING & BEHAVIOR (2012)

Article Plant Sciences

Cloning and characterization of a novel CONSTANS-like gene from Phalaenopsis hybrida

Jian-Xia Zhang et al.

ACTA PHYSIOLOGIAE PLANTARUM (2011)

Article Biochemistry & Molecular Biology

FLOWERING LOCUS T Regulates Stomatal Opening

Toshinori Kinoshita et al.

CURRENT BIOLOGY (2011)

Article Multidisciplinary Sciences

Control of flowering and storage organ formation in potato by FLOWERING LOCUS T

Cristina Navarro et al.

NATURE (2011)

Article Multidisciplinary Sciences

14-3-3 proteins act as intracellular receptors for rice Hd3a florigen

Ken-ichiro Taoka et al.

NATURE (2011)

Article Plant Sciences

Flowering Time Genes Heading date 1 and Early heading date 1 Together Control Panicle Development in Rice

Naokuni Endo-Higashi et al.

PLANT AND CELL PHYSIOLOGY (2011)

Article Multidisciplinary Sciences

FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis

Weiwei Deng et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Plant Sciences

Regulation and function of SOC1, a flowering pathway integrator

Jungeun Lee et al.

JOURNAL OF EXPERIMENTAL BOTANY (2010)

Article Biochemistry & Molecular Biology

Characterization of the maintained vegetative phase deletions from diploid wheat and their effect on VRN2 and FT transcript levels

Assaf Distelfeld et al.

MOLECULAR GENETICS AND GENOMICS (2010)

Article Biochemistry & Molecular Biology

MEME SUITE: tools for motif discovery and searching

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2009)

Letter Biochemistry & Molecular Biology

The Arabidopsis B-Box Zinc Finger Family

Rajnish Khanna et al.

PLANT CELL (2009)

Article Plant Sciences

Genetic and Molecular Characterization of the VRN2 Loci in Tetraploid Wheat

Assaf Distelfeld et al.

PLANT PHYSIOLOGY (2009)

Article Multidisciplinary Sciences

Vernalization-induced flowering in cereals is associated with changes in histone methylation at the VERNALIZATION1 gene

Sandra N. Oliver et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

Repression of Flowering by the miR172 Target SMZ

Johannes Mathieu et al.

PLOS BIOLOGY (2009)

Article Developmental Biology

Direct interaction of AGL24 and SOC1 integrates flowering signals in Arabidopsis

Chang Liu et al.

DEVELOPMENT (2008)

Article Developmental Biology

Hd3a and RFT1 are essential for flowering in rice

Reina Komiya et al.

DEVELOPMENT (2008)

Review Plant Sciences

FLC or not FLC: the other side of vernalization

Cristina Madeira Alexandre et al.

JOURNAL OF EXPERIMENTAL BOTANY (2008)

Article Plant Sciences

Wheat FT protein regulates VRN1 transcription through interactions with FDL2

Chengxia Li et al.

PLANT JOURNAL (2008)

Article Multidisciplinary Sciences

Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture

Nagashree N. Rao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Review Plant Sciences

The molecular basis of vernalization-induced flowering in cereals

Ben Trevaskis et al.

TRENDS IN PLANT SCIENCE (2007)

Article Multidisciplinary Sciences

Hd3a protein is a mobile flowering signal in rice

Shojiro Tamaki et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

Relaxed selection among duplicate floral regulatory genes in Lamiales

Jan E. Aagaard et al.

JOURNAL OF MOLECULAR EVOLUTION (2006)

Article Multidisciplinary Sciences

The tomato FT ortholog triggers systemic signals that regulate growth and flowering and substitute for diverse environmental stimuli

E Lifschitz et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

A divergent external loop confers antagonistic activity on floral regulators FT and TFL1

JH Ahn et al.

EMBO JOURNAL (2006)

Article Biochemistry & Molecular Biology

Arabidopsis CONSTANS-LIKE3 is a positive regulator of red light signaling and root growth

S Datta et al.

PLANT CELL (2006)

Article Biochemistry & Molecular Biology

The flowering integrator FT regulates SEPALLATA3 and FRUITFULL accumulation in Arabidopsis leaves

P Teper-Bamnolker et al.

PLANT CELL (2005)

Article Developmental Biology

Flowering: a time for integration

F Parcy

INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY (2005)

Review Plant Sciences

Rice plant development: from zygote to spikelet

J Itoh et al.

PLANT AND CELL PHYSIOLOGY (2005)

Article Multidisciplinary Sciences

The wheat VRN2 gene is a flowering repressor down-regulated by vernalization

LL Yan et al.

SCIENCE (2004)

Article Multidisciplinary Sciences

MADS box genes control vernalization-induced flowering in cereals

B Trevaskis et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biotechnology & Applied Microbiology

Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice

M Tadege et al.

PLANT BIOTECHNOLOGY JOURNAL (2003)

Article Multidisciplinary Sciences

Positional cloning of the wheat vernalization gene VRN1

L Yan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Plant Sciences

The evolution of CONSTANS-like gene families in barley, rice, and Arabidopsis

S Griffiths et al.

PLANT PHYSIOLOGY (2003)