☆ 4.7 Article

Comparative analyses of Linderniaceae plastomes, with implications for its phylogeny and evolution

FRONTIERS IN PLANT SCIENCE (2023)

相关参考文献

注意：仅列出部分参考文献，下载原文获取全部文献信息。

Review Plant Sciences

Dynamic evolution of the plastome in the Elm family (Ulmaceae)

Yongwei Gao et al.

Summary: This study compared the plastomes of Ulmaceae, revealing the dynamic evolution characteristics such as genome structure, codon usage bias, repeat sequences, molecular mutation rates, and phylogenetic inferences. The results showed high consistency in gene content and structure among Ulmaceae genera, with biased codon usage. Molecular evolution analysis indicated widespread purifying selection, with some genes under positive selection. Phylogenetic analysis supported the division of Ulmaceae into two main clades. This study provides valuable genomic data for understanding the evolution and phylogenetic relationships of Ulmaceae species.

PLANTA (2023)

添加到收藏夹

Article Multidisciplinary Sciences

Complete chloroplast genomes and comparative analysis of Ligustrum species

Lianxiang Long et al.

Summary: This study assembled and annotated the chloroplast genomes of four Ligustrum species and compared various characteristics, including gene structure, sequence alignment, codon preference, and nucleic acid diversity. Positive-selection genes screening and phylogenetic analysis were also performed. The results showed that the cp genome of Ligustrum had a similar structure to most angiosperms, with 132-137 genes and a circular tetrad structure. Several protein-coding genes were found to be positively selected, and a phylogenetic tree showed the relationship between Ligustrum and other Oleaceae species. This study provides important genetic information for further research on the phylogenetic development and adaptive evolution of Ligustrum species.

SCIENTIFIC REPORTS (2023)

添加到收藏夹

Article Plant Sciences

Genetic diversity and population divergence of Leonurus japonicus and its distribution dynamic changes from the last interglacial to the present in China

Yiheng Wang et al.

Summary: This study investigated the genetic diversity and divergence of Leonurus japonicus, a significant medicinal plant. The results showed that the nucleotide diversity was high in the petN-psbM and rpl32-trnL((UAG)) spacers, which could be used for genotype discrimination. The species were divided into four clades, with divergence influenced by geographical distribution and global temperature changes. Suitable climatic conditions were identified, showing expansion from the Last Glacial Maximum to the present. These findings have important implications for the conservation and utilization of Leonurus japonicus.

BMC PLANT BIOLOGY (2023)

添加到收藏夹

Article Multidisciplinary Sciences

Comparative chloroplast genome analysis of seven extant Citrullus species insight into genetic variation, phylogenetic relationships, and selective pressure

Cong Zhou et al.

Summary: This study assembled, analyzed, and published the complete chloroplast genomes of C. ecirrhosus, C. rehmii, and C. naudinianus for the first time. Comparative analysis of seven extant Citrullus species showed similarity in genome size, gene content, order, and structure. Noncoding regions were more divergent than coding regions, and genetic markers were identified for taxonomy. Three genes were found to promote environmental adaptation in Citrullus.

SCIENTIFIC REPORTS (2023)

添加到收藏夹

Article Plant Sciences

Backbone phylogeny and adaptive evolution of Pleurospermum s. l.: New insights from phylogenomic analyses of complete plastome data

Chang Peng et al.

Summary: This study assembled 40 complete plastomes from 36 species of Pleurospermum s. l. and related genera, generating a well-resolved phylogeny. Six well-supported monophyletic lineages within Pleurospermum s. l. were identified, providing a foundation for further taxonomic studies.

FRONTIERS IN PLANT SCIENCE (2023)

添加到收藏夹

Article Plant Sciences

Evolutionary and phylogenetic analyses of 11 Cerasus species based on the complete chloroplast genome

Tian Wan et al.

Summary: This study reports the chloroplast genome sequences of 11 Cerasus species to investigate the evolution of their plastome. The results reveal the typical quadripartite circular structure of Cerasus chloroplast genomes and the presence of 115 unique genes. Several genes were found to have high nucleotide diversity and more polymorphic sites, including matK, rps16, and rbcL. The phylogenetic analysis sheds light on the relationships between different Cerasus species, providing insights for further research on their phylogenetics and phylogeography.

FRONTIERS IN PLANT SCIENCE (2023)

添加到收藏夹

Article Plant Sciences

Insights into taxonomy and phylogenetic relationships of eleven Aristolochia species based on chloroplast genome

Xuanjiao Bai et al.

Summary: In this study, the complete chloroplast genomes of 11 Aristolochia species in China were sequenced. It was found that the size of their genomes ranged from 159,375bp to 160,626bp, and they contained 130-131 genes. Additionally, 11 highly mutational hotspot regions were identified. Phylogenetic analysis based on protein-coding genes provided insights into the classification, identification, and evolutionary relationships of Aristolochia species.

FRONTIERS IN PLANT SCIENCE (2023)

添加到收藏夹

Article Genetics & Heredity

Complete Chloroplast Genome of Four Thai Native Dioscorea Species: Structural, Comparative and Phylogenetic Analyses

Warin Wonok et al.

Summary: Through studying the chloroplast genomes of four Dioscorea species, the researchers found that the genome size ranged from 153,370 to 153,503 bp, with a total of 113 predicted genes, including 79 protein-coding sequences, 30 tRNA, and four rRNA genes. The overall GC content was 37%, and only mono-, di-, and trinucleotides were present in the genome. Analysis of the chloroplast genome alignment revealed eight distinct indel variations, and a sliding window analysis identified three highly variable regions. The phylogenetic tree constructed based on the complete chloroplast genome sequence provided valuable insights into the relationships and genetic identity of Dioscorea species.

GENES (2023)

添加到收藏夹

Article Plant Sciences

Phylogeny and adaptive evolution of subgenus Rhizirideum (Amaryllidaceae, Allium) based on plastid genomes

Xiao Fu et al.

Summary: This study investigated the phylogenetic relationships and adaptive evolution of the subgenus Rhizirideum in genus Allium. Through comparative plastome analysis and phylogenetic inferences, the relationships between different sections within the subgenus and between the subgenera were revealed. The study also provided new insights into the evolution and suggested repositioning of certain species.

BMC PLANT BIOLOGY (2023)

添加到收藏夹

Article Plant Sciences

Insights into the phylogeny and chloroplast genome evolution of Eriocaulon (Eriocaulaceae)

Enze Li et al.

Summary: By comparing and analyzing the chloroplast genome sequences of 15 Eriocaulon species from China, this study revealed the phylogenetic relationships and evolutionary history of this genus. Four molecular markers were identified for species identification and evolutionary analysis, supporting the taxonomic treatment of Eriocaulon. This study provides valuable tools for the identification and study of the evolutionary history of Eriocaulon species.

BMC PLANT BIOLOGY (2023)

添加到收藏夹

Article Biology

Plastid Phylogenomic Insights into the Inter-Tribal Relationships of Plantaginaceae

Pingxuan Xie et al.

Summary: The current classification of Plantaginaceae is complex and unresolved. This study compared 41 plastomes of Plantaginaceae species representing 11 tribes and revealed the conservation of plastome structure and gene content. Phylogenetic analysis based on 68 plastid protein-coding genes successfully elucidated the inter-tribal relationships of Plantaginaceae, including disputed tribes. PhyParts analysis showed conflicts between gene trees and species tree, revealing limitations of phylogenetic analysis using plastid DNA sequences. Overall, this study provides important insights into plastome characteristics and inter-tribal relationships of Plantaginaceae for future taxonomic and phylogenetic studies.

BIOLOGY-BASEL (2023)

添加到收藏夹

Article Biotechnology & Applied Microbiology

Comparative genomics and phylogenetic relationships of two endemic and endangered species (Handeliodendron bodinieri and Eurycorymbus cavaleriei) of two monotypic genera within Sapindales

Jiaxin Yang et al.

Summary: This study revealed that the cp genome size of the Hippocastanoideae was generally smaller compared to the other subfamilies within Sapindaceae, and three highly divergent regions could be used as the specific DNA barcodes within Sapindaceae. Phylogenetic results strongly support that the subdivision of four subfamilies within Sapindaceae, and Handeliodendron is not nested within the genus Aesculus.

BMC GENOMICS (2022)

添加到收藏夹

Article Plant Sciences

Comparative Analysis the Complete Chloroplast Genomes of Nine Musa Species: Genomic Features, Comparative Analysis, and Phylogenetic Implications

Weicai Song et al.

Summary: In this study, we used next-generation sequencing technology to analyze the chloroplast genomes of nine new Musa plants. The results provided insights into the genome structure, GC content, repeat structure, codon usage, and nucleotide diversity. Additionally, several non-coding sites and genes were identified as potential molecular markers. Phylogenetic analysis confirmed the division of Musa into two main groups based on the complete chloroplast genome and coding sequences of protein-coding genes.

FRONTIERS IN PLANT SCIENCE (2022)

添加到收藏夹

Article Biology

Comparative and Phylogenetic Analysis of Complete Plastomes among Aristidoideae Species (Poaceae)

Xiu-Xiu Guo et al.

Summary: This study focuses on the plastomes of Aristidoideae, a subfamily in the family Poaceae. The plastomes of two species, Aristida adscensionis and Stipagrostis pennata, were newly sequenced and compared with a total of 16 Aristidoideae plastomes. The plastomes were found to be conservative in terms of genome size, gene number, structure, and IR boundary. Repeat sequence analysis showed that forward and palindrome repeats were the most common types. The study also analyzed codon usage and identified highly variable regions. The phylogenetic analysis supported the monophyly of Aristidoideae and the relationship between the three genera. The divergence between different species may be associated with factors such as carbon fixation patterns, geographical distributions, and ploidy. This study contributes to our understanding of the phylogeny and evolution of Aristidoideae.

BIOLOGY-BASEL (2022)

添加到收藏夹

Article Plant Sciences

DNA Barcoding and Phylogenomic Analysis of the Genus Fritillaria in China Based on Complete Chloroplast Genomes

Qi Chen et al.

Summary: This study evaluates the effectiveness of chloroplast genomes in species discrimination and explores the phylogeny of Fritillaria in China. The results demonstrate that most Fritillaria species can be correctly identified using chloroplast genomes, with four specific gene regions showing higher resolution. The analysis also reveals a geographic structure in the subgenus Fritillaria and raises questions about the taxonomic treatment of two suspicious species. Molecular dating suggests a significant association between the origin and divergence of Fritillaria and geological and climatic fluctuations.

FRONTIERS IN PLANT SCIENCE (2022)

添加到收藏夹

Article Biodiversity Conservation

Chloroplast Genome of Salvia Sect. Drymosphace: Comparative and Phylogenetic Analysis

Ting Su et al.

Summary: In this study, we sequenced and analyzed the plastomes of eight sect. Drymosphace species. The results showed that the plastid genomes of sect. Drymosphace were highly conserved and similar to other Lamiaceae species. Phylogenomic analyses indicated that sect. Drymosphace was monophyletic and provided insight into the relationships between species.

DIVERSITY-BASEL (2022)

添加到收藏夹

Article Biotechnology & Applied Microbiology

Taxonomy, comparative genomics of Mullein (Verbascum, Scrophulariaceae), with implications for the evolution of Verbascum and Lamiales

Xiang Dong et al.

Summary: This study conducted a phylogenetic and taxonomic analysis of the genus Verbascum, revealing the classification and phylogenetic relationships of the genus. The results showed the relationships among species within Verbascum and proposed the reinstatement of species status for one species.

BMC GENOMICS (2022)

添加到收藏夹

Article Plant Sciences

Deep Insights Into the Plastome Evolution and Phylogenetic Relationships of the Tribe Urticeae (Family Urticaceae)

Catherine A. Ogoma et al.

Summary: This study used genome skimming data and a two-locus dataset to resolve the complex relationships within the Urticeae tribe, explore chloroplast structural evolution, and provide new insights into the phylogenetic relationships of its genera.

FRONTIERS IN PLANT SCIENCE (2022)

添加到收藏夹

Article Plant Sciences

Complete chloroplast genome sequences of Phlomis fruticosa and Phlomoides strigosa and comparative analysis of the genus Phlomis sensu lato (Lamiaceae)

Wei Zhao et al.

Summary: By analyzing the chloroplast genomes of Phlomis and Phlomoides species, it was confirmed that they should be recognized as independent genera.

FRONTIERS IN PLANT SCIENCE (2022)

添加到收藏夹

Article Plant Sciences

Plastome-based phylogeny and biogeography of Lactuca L. (Asteraceae) support revised lettuce gene pool categories

Ran Chu et al.

Summary: This study analyzed the plastome and ITS data of Lactuca species, revealing their phylogenetic relationships and origin. The results showed similarities in gene structure and characteristics among Lactuca species, but crop lettuce and its relatives had unique pseudogenes and signs of positive selection. The study revised the circumscription of Lactuca and provided insights into their phylogeny and genetic resources utilization.

FRONTIERS IN PLANT SCIENCE (2022)

添加到收藏夹

Article Plant Sciences

Comparative plastomes of Carya species provide new insights into the plastomes evolution and maternal phylogeny of the genus

Jianwei Xi et al.

Summary: This study examined the plastomes of Carya species and found significant differences in maternal sources between EA and NA Carya, highlighting the potential value of plastome in resolving maternal relationships.

FRONTIERS IN PLANT SCIENCE (2022)

添加到收藏夹

Article Genetics & Heredity

Comparative and Phylogenetic Analyses of Complete Chloroplast Genomes of Scrophularia incisa Complex (Scrophulariaceae)

Ruihong Wang et al.

Summary: Comparative genomic analysis of the Scrophularia incisa complex reveals the phylogenetic relationships within this group. The study shows that plastid genomes can improve phylogenetic resolution and species delimitation, particularly among closely related species.

GENES (2022)

添加到收藏夹

Article Biology

An updated tribal classification of Lamiaceae based on plastome phylogenomics

Fei Zhao et al.

Summary: A robust molecular phylogeny of the mint family, Lamiaceae, was established at the tribal level using plastid genes. This updated classification system and phylogenetic backbone will facilitate further studies on mint classification, biogeography, and diversification.

BMC BIOLOGY (2021)

添加到收藏夹

Article Genetics & Heredity

Comparative analysis of chloroplast genomes of seven perennial Helianthus species

Kirill Azarin et al.

Summary: Sequencing and comparative analysis of the complete chloroplast genomes of seven perennial Helianthus species revealed 35 polymorphic loci and eight divergence hotspots. The chloroplast genomes of these species showed low levels of sequence variability and strong purifying selection, with only the rbcL gene experiencing positive selection efficiency at annual/perennial transitions. The inverted repeat/single copy boundaries were consistent among all species, indicating a recent divergence time.

GENE (2021)

添加到收藏夹

Article Biochemistry & Molecular Biology

Combining molecular and geographical data to infer the phylogeny of Lamiales and its dispersal patterns in and out of the tropics

Luiz Henrique M. Fonseca

Summary: Lamiales is a challenging order of flowering plants with global distribution, and a comprehensive phylogeny was reconstructed using DNA sequences to infer dispersal patterns in tropical and extratropical regions. All families were recovered as monophyletic, with Bignoniaceae and Plantaginaceae standing out. The study revealed higher rates of transition from extratropics to tropics, showing a rare pattern of transitions to the tropics throughout the upper Cretaceous and Tertiary.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2021)

添加到收藏夹

Article Multidisciplinary Sciences

Complete chloroplast genome features and phylogenetic analysis of Eruca sativa (Brassicaceae)

Bin Zhu et al.

Summary: Eruca sativa is an important edible vegetable with potential medicinal properties due to antibacterial activity of its seed oil. The complete chloroplast genome of E. sativa shares similarities with other Brassicaceae species, and protein-coding genes show purifying selection pressure, suggesting evolutionary closeness with important Brassica species. This may allow transfer of beneficial alleles from E. sativa to improve other Brassica species.

PLOS ONE (2021)

添加到收藏夹

Article Multidisciplinary Sciences

Comparative analysis and phylogenetic investigation of Hong Kong Ilex chloroplast genomes

Bobby Lim-Ho Kong et al.

Summary: This study obtained complete chloroplast genomes of 19 native Ilex species in Hong Kong and found conservation in gene content and arrangement, with four highly varied sequences. The phylogenetic relationship among these Ilex genomes was investigated, leading to the reclassification of three species.

SCIENTIFIC REPORTS (2021)

添加到收藏夹

Article Plant Sciences

The Complete Chloroplast Genome Sequences of Eight Fagopyrum Species: Insights Into Genome Evolution and Phylogenetic Relationships

Yu Fan et al.

Summary: This study sequenced the chloroplast genomes of three buckwheat species and conducted comparative analysis, showing that most variations exist in specific regions and identified promising DNA barcodes. It also found SSR variations among buckwheat species, providing valuable information on light adaptation differences.

FRONTIERS IN PLANT SCIENCE (2021)

添加到收藏夹

Article Biochemistry & Molecular Biology

Backbone phylogeny and evolution of Apioideae (Apiaceae): New insights from phylogenomic analyses of plastome data

Jun Wen et al.

Summary: A study using genome skimming approach reconstructed the phylogeny of Apioideae, clarifying early divergences and proposing hypotheses about chloroplast capture events.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2021)

添加到收藏夹

Article Multidisciplinary Sciences

Comparative and phylogenetic analyses of the chloroplast genomes of species of Paeoniaceae

Liwei Wu et al.

Summary: Plants belonging to family Paeoniaceae, including sect. Paeonia, were studied in terms of their chloroplast genomes, revealing characteristics and evolutionary relationships within the Paeonia section. Phylogenetic analysis showed different branching patterns among species, providing insights into their evolutionary history.

SCIENTIFIC REPORTS (2021)

添加到收藏夹

Article Genetics & Heredity

Complete chloroplast genome sequence and phylogenetic analysis of Torenia fournieri

Gang Chen et al.

Summary: The complete chloroplast genome of Torenia fournieri was sequenced and analyzed in this study, revealing its gene composition and phylogenetic relationship with other plants in the genus Torenia.

MITOCHONDRIAL DNA PART B-RESOURCES (2021)

添加到收藏夹

Article Plant Sciences

Phylogenetic relationships of Cyrtandromoea and Wightia revisited: A new tribe in Phrymaceae and a new family in Lamiales

Bing Liu et al.

JOURNAL OF SYSTEMATICS AND EVOLUTION (2020)

添加到收藏夹

Article Biochemistry & Molecular Biology

PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

Dong Zhang et al.

MOLECULAR ECOLOGY RESOURCES (2020)

添加到收藏夹

Article Multidisciplinary Sciences

Comparative analysis of chloroplast genomes for five Dicliptera species (Acanthaceae): molecular structure, phylogenetic relationships, and adaptive evolution

Sunan Huang et al.

PEERJ (2020)

添加到收藏夹

Article Plant Sciences

Integrating DNA Sequences with Morphological Analysis Clarifies Phylogenetic Position ofSalvia grandifolia(Lamiaceae): An Enigmatic Species Endemic to Southwestern China

Guo-Xiong Hu et al.

INTERNATIONAL JOURNAL OF PLANT SCIENCES (2020)

添加到收藏夹

Article Biotechnology & Applied Microbiology

Analysis of six chloroplast genomes provides insight into the evolution ofChrysosplenium(Saxifragaceae)

Zhihua Wu et al.

BMC GENOMICS (2020)

添加到收藏夹

Article Plant Sciences

Analysis of codon usage bias of chloroplast genes inOryzaspecies Codon usage of chloroplast genes inOryzaspecies

Supriyo Chakraborty et al.

PLANTA (2020)

添加到收藏夹

Article Genetics & Heredity

Characteristics of Organellar Genomes and Nuclear Internal Transcribed Spacers in the Tertiary Relict GenusDipeltaand Their Phylogenomic Implications

Fangfang Peng et al.

FRONTIERS IN GENETICS (2020)

添加到收藏夹

Article Plant Sciences

The Complete Chloroplast Genome of the Vulnerable Oreocharis esquirolii (Gesneriaceae): Structural Features, Comparative and Phylogenetic Analysis

Li Gu et al.

PLANTS-BASEL (2020)

添加到收藏夹

Article Biotechnology & Applied Microbiology

GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

Jian-Jun Jin et al.

GENOME BIOLOGY (2020)

添加到收藏夹

Article Biochemistry & Molecular Biology

CPGAVAS2, an integrated plastome sequence annotator and analyzer

Linchun Shi et al.

NUCLEIC ACIDS RESEARCH (2019)

添加到收藏夹

Article Biochemical Research Methods

PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes

Xiao-Jian Qu et al.

PLANT METHODS (2019)

添加到收藏夹

Article Plant Sciences

Two new genera and species of Linderniaceae (Lamiales) from inselbergs in northeastern Brazil: morphological and karyological evidence

Erton M. Almeida et al.

PHYTOTAXA (2019)

添加到收藏夹

Article Biochemistry & Molecular Biology

Chloroplast genome analysis of box-ironbark Eucalyptus

Khawla G. Alwadani et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)

添加到收藏夹

Article Multidisciplinary Sciences

The complete chloroplast genome of Fagus crenata (subgenus Fagus) and comparison with F. engleriana (subgenus Engleriana)

James R. P. Worth et al.

PEERJ (2019)

添加到收藏夹

Article Genetics & Heredity

Complete plastome sequence of Torenia concolor Lindley (Linderniaceae): an ornamental herb

Xia-Lan Cheng et al.

MITOCHONDRIAL DNA PART B-RESOURCES (2019)

添加到收藏夹

Article Biochemistry & Molecular Biology

Comparison and Phylogenetic Analysis of Chloroplast Genomes of Three Medicinal and Edible Amomum Species

Yingxian Cui et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)

添加到收藏夹

Article Plant Sciences

Comparative Chloroplast Genomics at Low Taxonomic Levels: A Case Study Using Amphilophium (Bignonieae, Bignoniaceae)

Veronica A. Thode et al.

FRONTIERS IN PLANT SCIENCE (2019)

添加到收藏夹

Article Multidisciplinary Sciences

The complete chloroplast genome of the Jerusalem artichoke (Helianthus tuberosus L.) and an adaptive evolutionary analysis of the ycf2 gene

Qiwen Zhong et al.

PEERJ (2019)

添加到收藏夹

Article Biochemical Research Methods

IRscope: an online program to visualize the junction sites of chloroplast genomes

Ali Amiryousefi et al.

BIOINFORMATICS (2018)

添加到收藏夹

Article Genetics & Heredity

The Effect of Strong Purifying Selection on Genetic Diversity

Ivana Cvijovic et al.

GENETICS (2018)

添加到收藏夹

Article Biochemistry & Molecular Biology

Combining high-throughput sequencing and targeted loci data to infer the phylogeny of the Adenocalymma-Neojobertia clade (Bignonieae, Bignoniaceae)

Luiz Henrique M. Fonseca et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2018)

添加到收藏夹

Article Multidisciplinary Sciences

The complete chloroplast genome sequence of Epipremnum aureum and its comparative analysis among eight Araceae species

Na Tian et al.

PLOS ONE (2018)

添加到收藏夹

Article Genetics & Heredity

The Effect of Strong Purifying Selection on Genetic Diversity

Ivana Cvijovic et al.

GENETICS (2018)

添加到收藏夹

Article Biochemistry & Molecular Biology

Evolutionary Analysis of Plastid Genomes of Seven Lonicera L. Species: Implications for Sequence Divergence and Phylogenetic Relationships

Mi-Li Liu et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)

添加到收藏夹

Article Biochemistry & Molecular Biology

A Ycf2-FtsHi Heteromeric AAA-ATPase Complex Is Required for Chloroplast Protein Import

Shingo Kikuchi et al.

PLANT CELL (2018)

添加到收藏夹

Correction Plant Sciences

The phylogenetic placement of Australian Linderniaceae and implications for generic taxonomy (vol 31, pg 241, 2018)

Ed Biffin et al.

AUSTRALIAN SYSTEMATIC BOTANY (2018)

添加到收藏夹

Article Biochemistry & Molecular Biology

PMDBase: a database for studying microsatellite DNA and marker development in plants

Jingyin Yu et al.

NUCLEIC ACIDS RESEARCH (2017)

添加到收藏夹

Article Plant Sciences

Salvia united: The greatest good for the greatest number

Bryan T. Drew et al.

TAXON (2017)

添加到收藏夹

Article Plant Sciences

A Dynamic Tandem Repeat in Monocotyledons Inferred from a Comparative Analysis of Chloroplast Genomes in Melanthiaceae

Hoang Dang Khoa Do et al.

FRONTIERS IN PLANT SCIENCE (2017)

添加到收藏夹

Article Biochemical Research Methods

MISA-web: a web server for microsatellite prediction

Sebastian Beier et al.

BIOINFORMATICS (2017)

添加到收藏夹

Review Plant Sciences

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

James W. Byng et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2016)

添加到收藏夹

Article Biochemistry & Molecular Biology

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2016)

添加到收藏夹

Review Biotechnology & Applied Microbiology

Chloroplast genomes: diversity, evolution, and applications in genetic engineering

Henry Daniell et al.

GENOME BIOLOGY (2016)

添加到收藏夹

Article Biochemical Research Methods

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

Ryan R. Wick et al.

BIOINFORMATICS (2015)

添加到收藏夹

Article Plant Sciences

A Comparative Analysis of Whole Plastid Genomes from the Apiales: Expansion and Contraction of the Inverted Repeat, Mitochondrial to Plastid Transfer of DNA, and Identification of Highly Divergent Noncoding Regions

Stephen R. Downie et al.

SYSTEMATIC BOTANY (2015)

添加到收藏夹

Article Biology

Plant DNA barcoding: from gene to genome

Xiwen Li et al.

BIOLOGICAL REVIEWS (2015)

添加到收藏夹

Article Multidisciplinary Sciences

ycf1, the most promising plastid DNA barcode of land plants

Wenpan Dong et al.

SCIENTIFIC REPORTS (2015)

添加到收藏夹

Article Plant Sciences

PHYLOGENY OF LAMIIDAE

Nancy F. Refulio-Rodriguez et al.

AMERICAN JOURNAL OF BOTANY (2014)

添加到收藏夹

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

添加到收藏夹

Review Plant Sciences

Temporal and spatial origin of Gesneriaceae in the New World inferred from plastid DNA sequences

Mathieu Perret et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2013)

添加到收藏夹

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

添加到收藏夹

Article Biochemistry & Molecular Biology

OrganellarGenomeDRAW-a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

Marc Lohse et al.

NUCLEIC ACIDS RESEARCH (2013)

添加到收藏夹

Article Plant Sciences

The phylogeny of Linderniaceae - The new genus Linderniella, and new combinations within Bonnaya, Craterostigma, Lindernia, Micranthemum, Torenia and Vandellia

Eberhard Fischer et al.

WILLDENOWIA (2013)

添加到收藏夹

Article Plant Sciences

POLYMORPHIC CHLOROPLAST MICROSATELLITE LOCI IN NELUMBO (NELUMBONACEAE)

Jianhua Xue et al.

AMERICAN JOURNAL OF BOTANY (2012)

添加到收藏夹

Article Biochemical Research Methods

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

Matthew Kearse et al.

BIOINFORMATICS (2012)

添加到收藏夹

Article Multidisciplinary Sciences

Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding

Wenpan Dong et al.

PLOS ONE (2012)

添加到收藏夹

Article Biochemistry & Molecular Biology

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

Susann Wicke et al.

PLANT MOLECULAR BIOLOGY (2011)

添加到收藏夹

Article Plant Sciences

Testing the Monophyly and Placement of Lepechinia in the Tribe Mentheae (Lamiaceae)

Bryan T. Drew et al.

SYSTEMATIC BOTANY (2011)

添加到收藏夹

Article Evolutionary Biology

Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences

Bastian Schaeferhoff et al.

BMC EVOLUTIONARY BIOLOGY (2010)

添加到收藏夹

Article Biochemical Research Methods

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

P. Librado et al.

BIOINFORMATICS (2009)

添加到收藏夹

Article Biology

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

Matthew Parks et al.

BMC BIOLOGY (2009)

添加到收藏夹

Review Biochemistry & Molecular Biology

Chloroplast simple sequence repeats (cpSSRs): technical resources and recommendations for expanding cpSSR discovery and applications to a wide array of plant species

Daniel Ebert et al.

MOLECULAR ECOLOGY RESOURCES (2009)

添加到收藏夹

Article Plant Sciences

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

Birgitta Bremer et al.

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY (2009)

添加到收藏夹

Review Plant Sciences

An update on chloroplast genomes

V. Ravi et al.

PLANT SYSTEMATICS AND EVOLUTION (2008)

添加到收藏夹

Review Plant Sciences

Review of the systematics of Scrophulariaceae s.l. and their current disposition

David C. Tank et al.

AUSTRALIAN SYSTEMATIC BOTANY (2006)

添加到收藏夹

Article Biochemistry & Molecular Biology

The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

P Schattner et al.

NUCLEIC ACIDS RESEARCH (2005)

添加到收藏夹

Article Plant Sciences

Further disintegration of Scrophulariaceae

B Oxelman et al.

TAXON (2005)

添加到收藏夹

Article Plant Sciences

The Linderniaceae and Gratiolaceae are further lineages distinct from the Scrophulariaceae (Lamiales)

R Rahmanzadeh et al.

PLANT BIOLOGY (2005)

添加到收藏夹

Article Biochemistry & Molecular Biology

VISTA: computational tools for comparative genomics

KA Frazer et al.

NUCLEIC ACIDS RESEARCH (2004)

添加到收藏夹

Article Biochemistry & Molecular Biology

Mauve: Multiple alignment of conserved genomic sequence with rearrangements

ACE Darling et al.

GENOME RESEARCH (2004)

添加到收藏夹

Review Evolutionary Biology

Model selection and model averaging in phylogenetics: Advantages of akaike information criterion and Bayesian approaches over likelihood ratio tests

D Posada et al.

SYSTEMATIC BIOLOGY (2004)

添加到收藏夹

Article Plant Sciences

Redefining Phrymaceae:: The placement of Mimulus, tribe Mimuleae and Phryma

PM Beardsley et al.

AMERICAN JOURNAL OF BOTANY (2002)

添加到收藏夹

Article Biochemistry & Molecular Biology

REPuter: the manifold applications of repeat analysis on a genomic scale

S Kurtz et al.

NUCLEIC ACIDS RESEARCH (2001)

添加到收藏夹

Article Plant Sciences

Disintegration of the Scrophulariaceae

RG Olmstead et al.

AMERICAN JOURNAL OF BOTANY (2001)

添加到收藏夹

Article Plant Sciences

The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes

A Drescher et al.

PLANT JOURNAL (2000)

添加到收藏夹

© Peeref 2019-2024. All rights reserved.