相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Dynamics of CTCF- and cohesin-mediated chromatin looping revealed by live-cell imaging
Michele Gabriele et al.
SCIENCE (2022)
Cohesin and CTCF control the dynamics of chromosome folding
Pia Mach et al.
NATURE GENETICS (2022)
EBF1 and PAX5 control pro-B cell expansion via opposing regulation of the Myc gene
Rajesh Somasundaram et al.
BLOOD (2021)
Dynamic 3D Locus Organization and Its Drivers Underpin Immunoglobulin Recombination
Carolyn H. Rogers et al.
FRONTIERS IN IMMUNOLOGY (2021)
HP1 drives de novo 3D genome reorganization in early Drosophila embryos
Fides Zenk et al.
NATURE (2021)
Dynamics of the 4D genome during in vivo lineage specification and differentiation
A. Marieke Oudelaar et al.
NATURE COMMUNICATIONS (2020)
CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning
Zhaoqing Ba et al.
NATURE (2020)
Wapl repression by Pax5 promotes V gene recombination by Igh loop extrusion
Louisa Hill et al.
NATURE (2020)
Plasma Cell Fate Is Orchestrated by Elaborate Changes in Genome Compartmentalization and Inter-chromosomal Hubs (vol 31, 107470-1, 2020)
Alexandra Bortnick et al.
CELL REPORTS (2020)
Altered 3D chromatin structure permits inversional recombination at the IgH locus
Xiang Qiu et al.
SCIENCE ADVANCES (2020)
Effective model of loop extrusion predicts chromosomal domains
Martina Crippa et al.
PHYSICAL REVIEW E (2020)
Antisense lncRNA Transcription Mediates DNA Demethylation to Drive Stochastic Protocadherin α Promoter Choice
Daniele Canzio et al.
CELL (2019)
Three-dimensional genome structures of single sensory neurons in mouse visual and olfactory systems
Longzhi Tan et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)
The murine IgH locus contains a distinct DNA sequence motif for the chromatin regulatory factor CTCF
David N. Ciccone et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2019)
Chromosome dynamics near the sol-gel phase transition dictate the timing of remote genomic interactions
Nimish Khanna et al.
NATURE COMMUNICATIONS (2019)
Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication
Jiao Sima et al.
CELL (2019)
LHX2-and LDB1-mediated trans interactions regulate olfactory receptor choice
Kevin Monahan et al.
NATURE (2019)
Olfactory receptor genes make the case for inter-chromosomal interactions
Elizaveta Bashkirova et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2019)
Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus
Sofia A. Quinodoz et al.
CELL (2018)
The Energetics and Physiological Impact of Cohesin Extrusion
Laura Vian et al.
CELL (2018)
Sequential Enhancer Sequestration Dysregulates Recombination Center Formation at the IgH Locus
Xiang Qiu et al.
MOLECULAR CELL (2018)
Inter-chromosomal Contact Properties in Live-Cell Imaging and in Hi-C
Philipp G. Maass et al.
MOLECULAR CELL (2018)
Genome-wide analysis reveals no evidence of trans chromosomal regulation of mammalian immune development
Timothy M. Johanson et al.
PLOS GENETICS (2018)
Variable Extent of Lineage-Specificity and Developmental Stage-Specificity of Cohesin and CCCTC-Binding Factor Binding Within the Immunoglobulin and T Cell Receptor Loci
Salvatore Loguercio et al.
FRONTIERS IN IMMUNOLOGY (2018)
Organizational principles of 3D genome architecture
M. Jordan Rowley et al.
NATURE REVIEWS GENETICS (2018)
Misregulation of the IgH Locus in Thymocytes
Gita Kumari et al.
FRONTIERS IN IMMUNOLOGY (2018)
Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes
Yinxiu Zhan et al.
GENOME RESEARCH (2017)
Cell-cycle dynamics of chromosomal organization at single-cell resolution
Takashi Nagano et al.
NATURE (2017)
A Phase Separation Model for Transcriptional Control
Denes Hnisz et al.
CELL (2017)
Topologically Associating Domains in Chromosome Architecture and Gene Regulatory Landscapes during Development, Disease, and Evolution
Rafael Galupa et al.
CHROMOSOME SEGREGATION AND STRUCTURE, VOL 82, 2017 (2017)
Nuclear positioning rather than contraction controls ordered rearrangements of immunoglobulin loci
Magdalena B. Rother et al.
NUCLEIC ACIDS RESEARCH (2016)
Binding of nuclear factor κB to noncanonical consensus sites reveals its multimodal role during the early inflammatory response
Petros Kolovos et al.
GENOME RESEARCH (2016)
Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination
Daniel J. Bolland et al.
CELL REPORTS (2016)
Extremely Long-Range Chromatin Loops Link Topological Domains to Facilitate a Diverse Antibody Repertoire
Lindsey Montefiori et al.
CELL REPORTS (2016)
Transcription factor networks in B-cell differentiation link development to acute lymphoid leukemia
Rajesh Somasundaram et al.
BLOOD (2015)
Chromosomal Loop Domains Direct the Recombination of Antigen Receptor Genes
Jiazhi Hu et al.
CELL (2015)
CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
Ya Guo et al.
CELL (2015)
A structural hierarchy mediated by multiple nuclear factors establishes IgH locus conformation
Tatiana Gerasimova et al.
GENES & DEVELOPMENT (2015)
Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome
Stefan Schoenfelder et al.
NATURE GENETICS (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
New roles for DNA cytosine modification, eRNA, anchors, and superanchors in developing B cell progenitors
Christopher Benner et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Comparison of Hi-C results using in-solution versus in-nucleus ligation
Takashi Nagano et al.
GENOME BIOLOGY (2015)
Predictive Polymer Modeling Reveals Coupled Fluctuations in Chromosome Conformation and Transcription
Luca Giorgetti et al.
CELL (2014)
3D Trajectories Adopted by Coding and Regulatory DNA Elements: First-Passage Times for Genomic Interactions
Joseph S. Lucas et al.
CELL (2014)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
Pronounced cohabitation of active immunoglobulin genes from three different chromosomes in transcription factories during maximal antibody synthesis
Sung-Kyun Park et al.
GENES & DEVELOPMENT (2014)
Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C
Nicola H. Dryden et al.
GENOME RESEARCH (2014)
UpSet: Visualization of Intersecting Sets
Alexander Lex et al.
IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS (2014)
Genome Architecture: Domain Organization of Interphase Chromosomes
Wendy A. Bickmore et al.
CELL (2013)
Non-coding transcription and large-scale nuclear organisation of immunoglobulin recombination
Michael J. T. Stubbington et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2013)
Flexible Long-Range Loops in the VH Gene Region of the Igh Locus Facilitate the Generation of a Diverse Antibody Repertoire
Jasna Medvedovic et al.
IMMUNITY (2013)
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
Takashi Nagano et al.
NATURE (2013)
Unifying model for molecular determinants of the preselection V beta repertoire
Suhasni Gopalakrishnan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Robust 3D DNA FISH Using Directly Labeled Probes
Daniel J. Bolland et al.
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS (2013)
Chromatin Topology and the Regulation of Antigen Receptor Assembly
Claudia Bossen et al.
ANNUAL REVIEW OF IMMUNOLOGY, VOL 30 (2012)
Spatial Organization of the Mouse Genome and Its Role in Recurrent Chromosomal Translocations
Yu Zhang et al.
CELL (2012)
Germline Deletion of Igh 3′ Regulatory Region Elements hs 5, 6, 7 (hs5-7) Affects B Cell-Specific Regulation, Rearrangement, and Insulation of the Igh Locus
Sabrina A. Volpi et al.
JOURNAL OF IMMUNOLOGY (2012)
Close Proximity to Igh Is a Contributing Factor to AID-Mediated Translocations
Pedro P. Rocha et al.
MOLECULAR CELL (2012)
DNA damage defines sites of recurrent chromosomal translocations in B lymphocytes
Ofir Hakim et al.
NATURE (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
Spatial partitioning of the regulatory landscape of the X-inactivation centre
Elphege P. Nora et al.
NATURE (2012)
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
Yin C. Lin et al.
NATURE IMMUNOLOGY (2012)
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
Maxim Imakaev et al.
NATURE METHODS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Hi-C: A comprehensive technique to capture the conformation of genomes
Jon-Matthew Belton et al.
METHODS (2012)
Positive intergenic feedback circuitry, involving EBF1 and FOXO1, orchestrates B-cell fate
Robert Mansson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Complexity of chromatin folding is captured by the strings and binders switch model
Mariano Barbieri et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
V(D)J Recombination: Mechanisms of Initiation
David G. Schatz et al.
ANNUAL REVIEW OF GENETICS, VOL 45 (2011)
Two Forms of Loops Generate the Chromatin Conformation of the Immunoglobulin Heavy-Chain Gene Locus
Changying Guo et al.
CELL (2011)
CTCF-binding elements mediate control of V(D)J recombination
Chunguang Guo et al.
NATURE (2011)
CCCTC-binding factor (CTCF) and cohesin influence the genomic architecture of the Igh locus and antisense transcription in pro-B cells
Stephanie C. Degner et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The In Vivo Pattern of Binding of RAG1 and RAG2 to Antigen Receptor Loci
Yanhong Ji et al.
CELL (2010)
Chromosome dynamics and the regulation of V(D)J recombination
Susannah L. Hewitt et al.
IMMUNOLOGICAL REVIEWS (2010)
The Mouse Immunoglobulin Heavy Chain V-D Intergenic Sequence Contains Insulators That May Regulate Ordered V(D)J Recombination
Karen Featherstone et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells
Stefan Schoenfelder et al.
NATURE GENETICS (2010)
A global network of transcription factors, involving E2A, EBF1 and Foxo1, that orchestrates B cell fate
Yin C. Lin et al.
NATURE IMMUNOLOGY (2010)
Chromosome Territories
Thomas Cremer et al.
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2010)
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
Eran Eden et al.
BMC BIOINFORMATICS (2009)
Chromatin Architecture and the Generation of Antigen Receptor Diversity
Suchit Jhunjhunwala et al.
CELL (2009)
A 220-nucleotide deletion of the intronic enhancer reveals an epigenetic hierarchy in immunoglobulin heavy chain locus activation
Tirtha Chakraborty et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2009)
Cutting Edge: Developmental Stage-Specific Recruitment of Cohesin to CTCF Sites throughout Immunoglobulin Loci during B Lymphocyte Development
Stephanie C. Degner et al.
JOURNAL OF IMMUNOLOGY (2009)
RAG-1 and ATM coordinate monoallelic recombination and nuclear positioning of immunoglobulin loci
Susannah L. Hewitt et al.
NATURE IMMUNOLOGY (2009)
Foxo1 links homing and survival of naive T cells by regulating L-selectin, CCR7 and interleukin 7 receptor
Yann M. Kerdiles et al.
NATURE IMMUNOLOGY (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Regulation of B cell fate commitment and immunoglobulin heavy-chain gene rearrangements by Ikaros
Damien Reynaud et al.
NATURE IMMUNOLOGY (2008)
Distinct functions for the transcription factor Foxo1 at various stages of B cell differentiation
Hart S. Dengler et al.
NATURE IMMUNOLOGY (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Repeat organization and epigenetic regulation of the DH-Cμ domain of the immunoglobulin heavy-chain gene locusi
Tirtha Chakraborty et al.
MOLECULAR CELL (2007)
Antisense Intergenic transcription precedes Igh D-to-J recombination and is controlled by the intronic enhancer Eμ
Daniel J. Bolland et al.
MOLECULAR AND CELLULAR BIOLOGY (2007)
Myc dynamically and preferentially relocates to a transcription factory occupied by Igh
Cameron S. Osborne et al.
PLOS BIOLOGY (2007)
Akt1 and Akt2 are required for αβ thyrnocyte survival and differentiation
Marisa M. Juntilla et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The transcriptional regulation of B cell lineage commitment
Stephen L. Nutt et al.
IMMUNITY (2007)
Yin Yang 1 is a critical regulator of B-cell development
Huifei Liu et al.
GENES & DEVELOPMENT (2007)
Complete sequence assembly and characterization of the C57BL/6 mouse Ig heavy chain V region
Colette M. Johnston et al.
JOURNAL OF IMMUNOLOGY (2006)
Regulation of IgH gene assembly:: Role of the intronic enhancer and 5′DQ52 region in targeting DHJH recombination
R Afshar et al.
JOURNAL OF IMMUNOLOGY (2006)
Elucidation of IgH intronic enhancer functions via germ-fine deletion
T Perlot et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Regulation of interleukin 7-dependent immunoglobulin heavy-chain variable gene rearrangements by transcription factor STAT5
E Bertolino et al.
NATURE IMMUNOLOGY (2005)
Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes
A Bolzer et al.
PLOS BIOLOGY (2005)
Visualization of looping involving the immunoglobulin heavy-chain locus in developing B cells
C Sayegh et al.
GENES & DEVELOPMENT (2005)
Chromatin architecture near a potential 3′ end of the Igh locus involves modular regulation of histone modifications during B-Cell development and in vivo occupancy at CTCF sites
FE Garrett et al.
MOLECULAR AND CELLULAR BIOLOGY (2005)
Locus 'decontraction' and centromeric recruitment contribute to allelic exclusion of the immunoglobulin heavy-chain gene
E Roldan et al.
NATURE IMMUNOLOGY (2005)
Role of RUNX1 in adult hematopoiesis: analysis of RUNX1-IRES-GFP knock-in mice reveals differential lineage expression
RB Lorsbach et al.
BLOOD (2004)
Pax5 induces V-to-DJ rearrangements and locus contraction of the immunoglobulin heavy-chain gene
M Fuxa et al.
GENES & DEVELOPMENT (2004)
B cell-specific loss of histone 3 lysine 9 methylation in the VH locus depends on Pax5
K Johnson et al.
NATURE IMMUNOLOGY (2004)
Java Treeview-extensible visualization of microarray data
AJ Saldanha
BIOINFORMATICS (2004)
Antisense intergenic transcription in V(D)J recombination
DJ Bolland et al.
NATURE IMMUNOLOGY (2004)
Early B cell factor cooperates with Runx1 and mediates epigenetic changes associated with mb-1 transcription
H Maier et al.
NATURE IMMUNOLOGY (2004)
Antigen receptor loci poised for V(D)J rearrangement are broadly associated with BRG1 and flanked by peaks of histone H3 dimethylated at lysine 4
KB Morshead et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Changes in histone acetylation are associated with differences in accessibility of VH gene segments to V-DJ recombination during B-cell ontogeny and development
K Johnson et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
Pax5 is required for recombination of transcribed, acetylated, 5 ' IgH V gene segments
DGT Hesslein et al.
GENES & DEVELOPMENT (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development
ST Kosak et al.
SCIENCE (2002)
Localization of the 3′ IgH locus elements that effect long-distance regulation of class switch recombination
E Pinaud et al.
IMMUNITY (2001)
分享论文
