☆ 4.2 Article

Taxogenomic placement of Rasporella oleae and Rasporella dianae gen. and spp. nov., two insect associated yeast species

YEAST (2023)

相关参考文献

注意：仅列出部分参考文献，下载原文获取全部文献信息。

Article Mycology

A genome-informed higher rank classification of the biotechnologically important fungal subphylum Saccharomycotina

M. Groenewald et al.

Summary: The subphylum Saccharomycotina is a diverse lineage within the fungal phylum Ascomycota, consisting of over 1,200 known species divided into 16 families, one order, and one class. It exhibits high genomic diversity and includes both opportunistic human pathogens and species important in biotechnological applications. However, the biotechnological potential of most yeast species remains unexplored. The current classification of Saccharomycotina as a single class and order underestimates its diversity, and an updated classification with seven classes and 12 orders is proposed based on genome content analysis and phylogenetic relationships.

STUDIES IN MYCOLOGY (2023)

添加到收藏夹

Review Biotechnology & Applied Microbiology

Role of yeasts in the qualitative structuring of extra virgin olive oil

Biagi Angelo Zullo et al.

Summary: This review discusses the role of microbiota, specifically yeasts, in the quality of freshly produced olive oil. Yeasts can impact the chemical composition and sensory characteristics of the oil, either by improving health qualities or by worsening initial chemical characteristics during storage due to high water content. Physical treatments can reduce yeast concentration in the oil, affecting its biotic component.

JOURNAL OF APPLIED MICROBIOLOGY (2022)

添加到收藏夹

Article Biochemistry & Molecular Biology

TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes

Jan P. Meier-Kolthoff et al.

Summary: Microbial systematics is influenced by genome-based methods and faces challenges from the increasing number of taxon names and associated sequences. Accurate and reliable high-throughput platforms like LPSN and TYGS are essential for handling the data efficiently. The updates include new features and expanded database content to provide easy access to the data.

NUCLEIC ACIDS RESEARCH (2022)

添加到收藏夹

Review Immunology

Pathogenesis and virulence of Candida albicans

Jose Pedro Lopes et al.

Summary: This review synthesizes our current knowledge of tissue-specific determinants of Candida albicans pathogenicity and host immune defense mechanisms.

VIRULENCE (2022)

添加到收藏夹

Article Biotechnology & Applied Microbiology

Predicting interactions of the frass-associated yeast Hyphopichia heimii with Olea europaea subsp. cuspidata and twig-boring bark beetles

Justin J. Asmus et al.

Summary: The study found that a rare yeast, Hyphopichia heimii, is present in the frass of bark beetles from wild olive trees in South Africa. This yeast is capable of potentially interacting with both trees and bark beetles. Furthermore, the physiological characterizations and chemical analyses demonstrated the potential symbiotic relationship between H. heimii, olive trees, and bark beetles.

FOLIA MICROBIOLOGICA (2022)

添加到收藏夹

Article Microbiology

Phylogeny of Rhodotorula pinalis and Its Reclassification as Fellozyma pinalis comb. nov

A. V. Kachalkin

Summary: The type strain Rhodotorula pinalis VKM Y-2963 was genetically and phylogenetically characterized, and it was found to be conspecific with strains from Sphagnum mosses and dead conifer needles. Phylogenetic analysis suggests that the species Rh. pinalis should be reassigned to the genus Fellozyma.

MICROBIOLOGY (2022)

添加到收藏夹

Article Biochemistry & Molecular Biology

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

Ivica Letunic et al.

Summary: The Interactive Tree Of Life is an online tool for displaying, manipulating, and annotating phylogenetic and other trees. The latest version 5 introduces a new tree display engine and several new features, such as a new dataset type and expanded annotation options. Users can now also manually annotate trees by hand, providing more flexibility and control.

NUCLEIC ACIDS RESEARCH (2021)

添加到收藏夹

Letter Biochemistry & Molecular Biology

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

Mose Manni et al.

Summary: The BUSCO software provides essential methods for assessing the quality of genomic and metagenomic data, offering new functionalities and improvements to streamline the process. It is capable of evaluating both eukaryotic and prokaryotic species, and can be used across various data types including genome assemblies, metagenomic bins, transcriptomes, and gene sets.

MOLECULAR BIOLOGY AND EVOLUTION (2021)

添加到收藏夹

Article Microbiology

Hanseniaspora smithiae sp. nov., a Novel Apiculate Yeast Species From Patagonian Forests That Lacks the Typical Genomic Domestication Signatures for Fermentative Environments

Neza Cadez et al.

Summary: Through genetic analyses of Hanseniaspora and its close relatives, a new species, Hanseniaspora smithiae sp. nov., was identified with distinct genomic differences from its closest relatives, shedding light on the characteristics of this novel species during diversification and providing insights into the mode of speciation in Hanseniaspora.

FRONTIERS IN MICROBIOLOGY (2021)

添加到收藏夹

Article Microbiology

Limtongozyma siamensis gen. nov., sp. nov., a yeast species in the Saccharomycetales and reassignment of Candida cylindracea to the genus Limtongozyma

Wanatchaporn Boontham et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2020)

添加到收藏夹

Article Biochemistry & Molecular Biology

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

添加到收藏夹

Review Biotechnology & Applied Microbiology

Towards yeast taxogenomics: lessons from novel species descriptions based on complete genome sequences

D. Libkind et al.

FEMS YEAST RESEARCH (2020)

添加到收藏夹

Article Microbiology

Delineating yeast species with genome average nucleotide identity: a calibration of ANI with haplontic, heterothallicMetschnikowiaspecies

Marc-Andre Lachance et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2020)

添加到收藏夹

Article Multidisciplinary Sciences

Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota

Xing-Xing Shen et al.

SCIENCE ADVANCES (2020)

添加到收藏夹

Article Biotechnology & Applied Microbiology

OrthoFinder: phylogenetic orthology inference for comparative genomics

David M. Emms et al.

GENOME BIOLOGY (2019)

添加到收藏夹

Review Biotechnology & Applied Microbiology

The Suhomyces clade: from single isolate to multiple species to disintegrating sex loci

Teeratas Kijpornyongpan et al.

FEMS YEAST RESEARCH (2019)

添加到收藏夹

Review Biochemistry & Molecular Biology

Yeast-insect associations: It takes guts

Irene Stefanini

YEAST (2018)

添加到收藏夹

Article Biochemistry & Molecular Biology

Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum

Xing-Xing Shen et al.

CELL (2018)

添加到收藏夹

Article Biochemical Research Methods

ModelFinder: fast model selection for accurate phylogenetic estimates

Subha Kalyaanamoorthy et al.

NATURE METHODS (2017)

添加到收藏夹

Article Biotechnology & Applied Microbiology

Genome sequence and physiological analysis of Yamadazyma laniorum f.a. sp nov and a reevaluation of the apocryphal xylose fermentation of its sister species, Candida tenuis

Max A. B. Haase et al.

FEMS YEAST RESEARCH (2017)

添加到收藏夹

Article Biochemical Research Methods

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

Michael Richter et al.

BIOINFORMATICS (2016)

添加到收藏夹

Article Mycology

DNA barcoding revealed Nematodospora valgi gen. nov., sp nov and Candida cetoniae sp nov in the Lodderomyces Glade

Dilnora E. Gouliamova et al.

FUNGAL BIOLOGY (2016)

添加到收藏夹

Article Microbiology

Metahyphopichia laotica gen. nov., sp nov., a polymorphic yeast related to Hyphopichia

Matthias Sipiczki et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)

添加到收藏夹

Article Multidisciplinary Sciences

Comparative genomics of biotechnologically important yeasts

Robert Riley et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

添加到收藏夹

Article Mycology

DNA barcoding analysis of more than 9 000 yeast isolates contributes to quantitative thresholds for yeast species and genera delimitation

D. Vu et al.

STUDIES IN MYCOLOGY (2016)

添加到收藏夹

Article Biotechnology & Applied Microbiology

Description of Teunomyces gen. nov for the Candida kruisii clade, Suhomyces gen. nov for the Candida tanzawaensis clade and Suhomyces kilbournensis sp nov.

Cletus P. Kurtzman et al.

FEMS YEAST RESEARCH (2016)

添加到收藏夹

Article Microbiology

Description of Diutina gen. nov., Diutina siamensis, f.a. sp nov., and reassignment of Candida catenulata, Candida mesorugosa, Candida neorugosa, Candida pseudorugosa, Candida ranongensis, Candida rugosa and Candida scorzettiae to the genus Diutina

Pannida Khunnamwong et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)

添加到收藏夹

Review Microbiology

On the reclassification of species assigned to Candida and other anamorphic ascomycetous yeast genera based on phylogenetic circumscription

Heide-Marie Daniel et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2014)

添加到收藏夹

Article Microbiology

Three new anascosporic genera of the Saccharomycotina: Danielozyma gen. nov., Deakozyma gen. nov and Middelhovenomyces gen. nov

Cletus P. Kurtzman et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2014)

添加到收藏夹

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

添加到收藏夹

Article Biochemical Research Methods

InterProScan 5: genome-scale protein function classification

Philip Jones et al.

BIOINFORMATICS (2014)

添加到收藏夹

Article Multidisciplinary Sciences

Molecular Phylogenetic Analysis Reveals the New Genus Hemisphaericaspora of the Family Debaryomycetaceae

Fengli Hui et al.

PLOS ONE (2014)

添加到收藏夹

Article Biochemical Research Methods

QUAST: quality assessment tool for genome assemblies

Alexey Gurevich et al.

BIOINFORMATICS (2013)

添加到收藏夹

Article Biochemical Research Methods

Genome sequence-based species delimitation with confidence intervals and improved distance functions

Jan P. Meier-Kolthoff et al.

BMC BIOINFORMATICS (2013)

添加到收藏夹

Article Biotechnology & Applied Microbiology

Optimization of extracellular lipase production by Debaryomyces hansenii isolates from dry-salted olives using response surface methodology

Christina Papagora et al.

FOOD AND BIOPRODUCTS PROCESSING (2013)

添加到收藏夹

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

添加到收藏夹

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

添加到收藏夹

Article Biochemical Research Methods

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

Carson Holt et al.

BMC BIOINFORMATICS (2011)

添加到收藏夹

Article Multidisciplinary Sciences

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

Geraldine Butler et al.

NATURE (2009)

添加到收藏夹

Article Microbiology

Two new ascomycetous anamorphic yeast species related to Candida friedrichii -: Candida jaroonii sp nov., and Candida songkhlaensis sp nov -: isolated in Thailand

Yumi Imanishi et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2008)

添加到收藏夹

Article Mycology

The beetle gut: a hyperdiverse source of novel yeasts

SO Suh et al.

MYCOLOGICAL RESEARCH (2005)

添加到收藏夹

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

添加到收藏夹

Article Multidisciplinary Sciences

Genome evolution in yeasts

B Dujon et al.

NATURE (2004)

添加到收藏夹

Article Biochemical Research Methods

A greedy algorithm for aligning DNA sequences

Z Zhang et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2000)

添加到收藏夹

© Peeref 2019-2024. All rights reserved.