4.7 Review

Metallo-β-lactamase-mediated antimicrobial resistance and progress in inhibitor discovery

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Progressive in vivo development of resistance to cefiderocol in Pseudomonas aeruginosa

Mustafa Sadek et al.

Summary: This study reports the development of cefiderocol resistance among sequential Pseudomonas aeruginosa clinical isolates, without exposure to the drug. The resistance was driven by multifactorial mechanisms, including mutational changes in iron transporter proteins associated with drug uptake and overexpression of certain genes.

EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2023)

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Evolution and Transmission of Cefiderocol-Resistant Acinetobacter baumannii During an Outbreak in the Burn Intensive Care Unit

Steven M. Smoke et al.

Summary: This study reports on the treatment outcomes of 11 critically ill burn patients using cefiderocol for carbapenem-resistant Acinetobacter baumannii infections. The clinical success rate was 36%, but was complicated by the emergence of treatment-resistant A. baumannii and its transmission among patients. The resistant strains harbored disrupted pirA and piuA genes, which were not disrupted in susceptible strains.

CLINICAL INFECTIOUS DISEASES (2023)

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MeDBA: the Metalloenzyme Data Bank and Analysis platform

Jun-Lin Yu et al.

Summary: Metalloenzymes are the focus of research in chemistry, biology, and medicine due to their conservation of metal-coordination and ligand binding modes. The Metalloenzyme Data Bank and Analysis (MeDBA) is a versatile platform that provides comprehensive information, structural data, and analysis tools for metalloenzymes, facilitating further research in this field.

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Article Microbiology

New Delhi Metallo-Beta-Lactamase Facilitates the Emergence of Cefiderocol Resistance in Enterobacter cloacae

Dennis Nurjadi et al.

Summary: This study found that the emergence of resistance to Cefiderocol in metallo-beta-lactamase-producing bacteria is facilitated by mutations in the CirA siderophore receptor, which are induced by the New Delhi metallo-beta-lactamase. However, inhibiting the metallo-beta-lactamase activity using dipicolinic acid can successfully prevent the development of Cefiderocol-resistant mutants. Therefore, caution should be taken when using Cefiderocol to treat infections caused by metallo-beta-lactamase-producing bacteria.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2022)

Article Immunology

Infectious Diseases Society of America Guidance on the Treatment of AmpC β-Lactamase-Producing Enterobacterales, Carbapenem-Resistant Acinetobacter baumannii, and Stenotrophomonas maltophilia Infections

Pranita D. Tamma et al.

Summary: The Infectious Diseases Society of America (IDSA) has provided updated guidance on the treatment of antimicrobial-resistant infections, focusing on treating AmpC-producing Enterobacterales, carbapenem-resistant Acinetobacter baumannii, and Stenotrophomonas maltophilia infections. The guidance is based on clinical experience, expert opinion, and a review of available literature, as published data on optimal treatment options are limited. This document emphasizes treatment approaches for infections in the United States, considering differences in resistance epidemiology and the availability of specific anti-infectives internationally.

CLINICAL INFECTIOUS DISEASES (2022)

Article Immunology

Cefiderocol for the Treatment of Infections Due to Metallo-B-lactamase-Producing Pathogens in the CREDIBLE-CR and APEKS-NP Phase 3 Randomized Studies

Jean-Francois Timsit et al.

Summary: The CREDIBLE-CR and APEKS-NP studies showed that cefiderocol treatment is effective against gram-negative bacteria producing metallo-B-lactamases, with favorable rates of clinical cure, microbiological eradication, and all-cause mortality compared to other treatment options.

CLINICAL INFECTIOUS DISEASES (2022)

Article Infectious Diseases

European Society of Clinical Microbiology and Infectious Diseases (ESCMID) guidelines for the treatment of infections caused by multidrug-resistant Gram-negative bacilli (endorsed by European society of intensive care medicine)

Mical Paul et al.

Summary: These guidelines address the targeted antibiotic treatment of 3GCephRE and carbapenem-resistant Gram-negative bacteria, focusing on the effectiveness of individual antibiotics and on combination versus monotherapy. Most recommendations are based on low-certainty evidence.

CLINICAL MICROBIOLOGY AND INFECTION (2022)

Review Biochemistry & Molecular Biology

Deciphering the evolution of metallo-β-lactamases: A journey from the test tube to the bacterial periplasm

Carolina Lopez et al.

Summary: Understanding the evolution of MBLs is crucial for understanding pathogenic bacteria's resistance to carbapenems. Current research mainly focuses on the in vitro environment, ignoring the physiological context inside bacteria. Recent efforts have been made to simulate the bacterial periplasm and explore the evolutionary traits of different clinical variants of MBLs while considering their solubility or membrane-bound state.

JOURNAL OF BIOLOGICAL CHEMISTRY (2022)

Article Infectious Diseases

Mechanisms of Reduced Susceptibility to Cefiderocol Among Isolates from the CREDIBLE-CR and APEKS-NP Clinical Trials

Patrice Nordmann et al.

Summary: The objective of this study is to characterize isolates with reduced susceptibility to cefiderocol in patients receiving cefiderocol for nosocomial pneumonia or carbapenem-resistant infections. The study found that although the minimum inhibitory concentration of some isolates increased by more than 4-fold, they remained susceptible to cefiderocol. Mutations related to enzyme activity and protein were identified in the isolates, which may contribute to the decreased susceptibility to cefiderocol.

MICROBIAL DRUG RESISTANCE (2022)

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Imitation of β-lactam binding enables broad-spectrum metallo-β-lactamase inhibitors

Jurgen Brem et al.

Summary: The discovery of a potent new class of MBL inhibitor, InCs, restores carbapenem activity against multidrug-resistant bacteria with low resistance frequency. In combination with meropenem, InCs show strong in vivo efficacy in mouse infection models.

NATURE CHEMISTRY (2022)

Article Immunology

Rapid Development of Cefiderocol Resistance in Carbapenem-resistant Enterobacter cloacae During Therapy Is Associated With Heterogeneous Mutations in the Catecholate Siderophore Receptor cirA

Sabrina Klein et al.

Summary: This report presents a case of resistance development to cefiderocol in a patient with intra-abdominal and bloodstream infections caused by carbapenemase-producing Enterobacter cloacae. Whole genome sequencing revealed heterogeneous mutations in the cirA gene, which encodes a siderophore receptor, contributing to phenotypic resistance to cefiderocol.

CLINICAL INFECTIOUS DISEASES (2022)

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Klebsiella pneumoniae Mutants Resistant to Ceftazidime-Avibactam Plus Aztreonam, Imipenem-Relebactam, Meropenem-Vaborbactam, and Cefepime-Taniborbactam

Naphat Satapoomin et al.

Summary: The study reveals a variant of Klebsiella pneumoniae that exhibits resistance to multiple antibiotics, including ceftazidime-avibactam and meropenem-vaborbactam. Further mutations and enzyme production are required for resistance to other antibiotics.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2022)

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Impact of Acquired Broad-Spectrum β-Lactamases on Susceptibility to Cefiderocol and Newly Developed β-Lactam/β-Lactamase Inhibitor Combinations in Escherichia coli and Pseudomonas aeruginosa

Laurent Poirel et al.

Summary: The study evaluated the susceptibility of broad-spectrum beta-lactamases to various antibiotics, and found that clavulanic-acid-inhibited extended-spectrum beta-lactamases significantly affected the susceptibility to ceftazidime-avibactam, ceftolozane-tazobactam, and cefiderocol.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2022)

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A novel Bacteroides metallo-β-lactamase (MBL) and its gene (crxA) in Bacteroides xylanisolvens revealed by genomic sequencing and functional analysis

Jozsef Soki et al.

Summary: Our study aimed to characterize the carbapenem resistance mechanism of an imipenem-resistant strain, Bacteroides xylanisolvens 14880 from Germany, and evaluate its prevalence. The strain displayed resistance to carbapenems, produced high specific imipenemase activity, and harbored a class B1 beta-lactamase gene, crxA, on a putative genomic island. The presence of crxA was specific to B. xylanisolvens with a carriage rate of 16.7%, suggesting a unique carbapenem resistance gene system in this Bacteroides species.

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Characterization of GMB-1, a novel metallo-beta-lactamase (MBL) found in three different Enterobacterales species

Jennifer Schauer et al.

Summary: The study aims to identify novel carbapenem resistance mechanisms and their potential to spread among clinical isolates. Through various tests, a new carbapenemase GMB-1 was identified in clinical isolates. Further studies confirmed its functional activity but showed reduced activity against certain drugs. The GMB-1 gene was found to be located on a genetic island on the chromosome, indicating the mobility and potential spread of carbapenemase genes in different species.

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Carbapenemase-producing Pseudomonas aeruginosa -an emerging challenge

Fred C. Tenover et al.

Summary: The article discusses the clinical importance of carbapenem-resistant Pseudomonas aeruginosa (CR-PA) worldwide, including the resistance situation of the pathogen, transmission routes, different types of carbapenemases in various regions, and strategies for optimizing treatment.

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Emergence of High-Level Cefiderocol Resistance in Carbapenem-Resistant Klebsiella pneumoniae from Bloodstream Infections in Patients with Hematologic Malignancies in China

Peng Lan et al.

Summary: Cefiderocol-resistant CRKP strains are emerging in Chinese patients with hematologic malignancies. The resistance is mediated by multiple factors including the deficiency of CirA, metallo- or serine-beta-lactamases, and can be further enhanced by NDM expression and CirA deficiency. This poses challenges to the clinical efficacy of cefiderocol in the future.

MICROBIOLOGY SPECTRUM (2022)

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Mutation of PA4292 in Pseudomonas aeruginosa Increases β-Lactam Resistance through Upregulating Pyocyanin Production

Xinrui Zhao et al.

Summary: Aztreonam/avibactam is an effective drug against Metallo-beta-lactamase (MBL)-producing Pseudomonas aeruginosa, a pathogen causing highly lethal infections. This study discovered a novel gene mutation, PM292, that could lead to resistance to aztreonam/avibactam and beta-lactams. Additionally, the study found that overproduction of pyocyanin increased bacterial resistance to beta-lactams.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2022)

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Biochemical Characterization of the Subclass B3 Metallo-β-Lactamase PJM-1 from Pseudoxanthomonas japonensis

Kageto Yamada et al.

Summary: In this study, the biochemical properties of a novel subclass B3 metallo-beta-lactamase (MBL) PJM-1 expressed in Pseudoxanthomonas japonensis, a commonly isolated environmental bacterium, were investigated. The bla(PJM-1) gene, comprising 906-bp, was found to be specific to P. japonensis and PJM-1 showed 81.8% amino acid identity with AIM-1. Recombinant expression and purification of PJM-1 were performed, revealing low catalytic activity against ceftazidime and cefepime, and strong inhibition by EDTA.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2022)

Article Infectious Diseases

Catecholate siderophore receptor CirA impacts cefiderocol susceptibility in Klebsiella pneumoniae

Peng Lan et al.

Summary: Cefiderocol, a cephalosporin antibiotic, exhibits expanded antimicrobial activity. CirA1 has higher iron-transporting ability than CirA198, leading to increased susceptibility to Cefiderocol.

INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS (2022)

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Ceftazidime-Avibactam plus Aztreonam for the Treatment of Infections by VIM-Type-Producing Gram-Negative Bacteria

Abiu Sempere et al.

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ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2022)

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Cefiderocol resistance genomics in sequential chronic Pseudomonas aeruginosa isolates from cystic fibrosis patients

Carla López-Causapé et al.

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Efficacy of Ceftazidime-avibactam Plus Aztreonam in Patients With Bloodstream Infections Caused by Metallo-β-lactamase-Producing Enterobacterales

Marco Falcone et al.

Summary: This study aimed to compare the outcomes of patients with MBL-producing Enterobacterales bloodstream infections treated with CAZ-AVI + ATM or other active antibiotics. The results showed that CAZ-AVI + ATM was associated with lower 30-day mortality, lower clinical failure at day 14, and shorter length of stay.

CLINICAL INFECTIOUS DISEASES (2021)

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An updated phylogeny of the metallo-β-lactamases

Fanny Berglund et al.

Summary: The objective was to expand the phylogeny of MBLs, revealing distinct monophyletic groups within subclasses B1 and B3 and identifying new variants of zinc binding sites. Based on the results, it is recommended to refine the nomenclature of MBLs into phylogenetic groups that accurately describe their characteristics.

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Cefiderocol versus high-dose, extended-infusion meropenem for the treatment of Gram-negative nosocomial pneumonia (APEKS-NP): a randomised, double-blind, phase 3, non-inferiority trial

Richard G. Wunderink et al.

Summary: Cefiderocol was found to be non-inferior to high-dose, extended-infusion meropenem in terms of all-cause mortality on day 14 in patients with Gram-negative nosocomial pneumonia, with similar tolerability. This suggests that cefiderocol is a potential option for the treatment of patients with nosocomial pneumonia, including those caused by multidrug-resistant Gram-negative bacteria.

LANCET INFECTIOUS DISEASES (2021)

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Molecular Evolution of Transition Metal Bioavailability at the Host-Pathogen Interface

Giuliano T. Antelo et al.

Summary: The molecular evolution of the adaptive response at the host-pathogen interface, known as an 'arms race,' involves strategies employed by the innate immune system to starve microbes of metals, countered by pathogens maintaining access to metal ions. Recent exploration of how evolution repurposes host and pathogen proteins to perform new functions is discussed, with a focus on metalloproteins restricting bacterial access to transition metals. Coevolution with bacterial metal acquisition systems and the evolution of metallo-?-lactamases in the context of host-imposed nutritional immunity are also examined.

TRENDS IN MICROBIOLOGY (2021)

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Evolution of Cefiderocol Non-Susceptibility in Pseudomonas aeruginosa in a Patient Without Previous Exposure to the Antibiotic

Ana Paula Streling et al.

Summary: A study reported the emergence of non-susceptibility to cefiderocol in a subpopulation of Pseudomonas aeruginosa recovered from a patient without prior exposure to the antibiotic. Whole genome sequencing revealed mutations in major iron transport pathways linked to cefiderocol uptake, highlighting the importance of susceptibility testing before therapy with siderophore cephalosporins.

CLINICAL INFECTIOUS DISEASES (2021)

Review Infectious Diseases

Systematic review on estimated rates of nephrotoxicity and neurotoxicity in patients treated with polymyxins

Florian Wagenlehner et al.

Summary: Polymyxin treatment is associated with a higher risk of nephrotoxicity compared to non-polymyxin-based regimens. The nephrotoxicity rate is higher in patients receiving polymyxins, while there is no significant difference in neurotoxicity between polymyxin and non-polymyxin treatments.

CLINICAL MICROBIOLOGY AND INFECTION (2021)

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Colistin Heteroresistance Is Largely Undetected among Carbapenem-Resistant Enterobacterales in the United States

Victor Band et al.

Summary: The study revealed varying levels of colistin heteroresistance among highly drug-resistant carbapenem-resistant Enterobacterales (CRE), with most heteroresistant isolates being misclassified as colistin susceptible by clinical diagnostic testing. The findings from the 2015 study suggest a high frequency of colistin heteroresistance in CRE.
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AncPhore: A versatile tool for anchor pharmacophore steered drug discovery with applications in discovery of new inhibitors targeting metallo-β-lactamases and indoleamine/tryptophan 2,3-dioxygenases

Qingqing Dai et al.

Summary: AncPhore is a versatile tool for drug discovery that improves prediction ability on different types of target proteins by analyzing pharmacophore features and using anchor pharmacophores. It has the potential to efficiently identify new inhibitors for various protein targets.

ACTA PHARMACEUTICA SINICA B (2021)

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Selection of QPX7831, an Orally Bioavailable Prodrug of Boronic Acid β-Lactamase Inhibitor QPX7728

K. Raja Reddy et al.

Summary: Efforts were made to identify an oral prodrug of beta-lactamase inhibitor clinical candidate QPX7728, and compound 5-Na (QPX7831 Sodium) emerged with optimal properties across all key attributes after synthesizing 17 prodrugs and investigating their key properties.

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Epidemiology of Carbapenem Resistance Determinants Identified in Meropenem-Nonsusceptible Enterobacterales Collected as Part of a Global Surveillance Program, 2012 to 2017

Krystyna M. Kazmierczak et al.

Summary: The study estimated the incidence of carbapenem-resistant Enterobacterales globally and found that the resistance mechanisms varied by region, with KPC-type, metallo-beta-lactamases, and OXA-48-like beta-lactamases being the main contributors. The overall percentage of meropenem-nonsusceptible Enterobacterales increased from 2012 to 2017, with different carbapenemase types showing increasing proportions in different regions.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2021)

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Activity of cefepime/zidebactam (WCK 5222) against 'problem' antibiotic-resistant Gram-negative bacteria sent to a national reference laboratory

Shazad Mushtaq et al.

Summary: The study demonstrated that cefepime/zidebactam showed universal susceptibility against multidrug-resistant Enterobacterales, inhibited most Enterobacterales with MBLs, and had enhanced activity against isolates highly resistant to cefepime and zidebactam alone. Additionally, cefepime/zidebactam exhibited good inhibitory effects on Pseudomonas aeruginosa and Acinetobacter baumannii, with the potential to overcome critical resistances in both gram-negative bacteria.

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Meropenem-Vaborbactam as Salvage Therapy for Ceftazidime-Avibactam-, Cefiderocol-Resistant ST-512 Klebsiella pneumoniae-Producing KPC-31, a D179Y Variant of KPC-3

Giusy Tiseo et al.

Summary: A 68-year-old man had recurrent bacteremia caused by a K. pneumoniae strain producing the KPC-3 variant enzyme, resistant to ceftazidime-avibactam but susceptible to meropenem after treatment.

OPEN FORUM INFECTIOUS DISEASES (2021)

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Contribution of PER-Type and NDM-Type β-Lactamases to Cefiderocol Resistance in Acinetobacter baumannii

Laurent Poirel et al.

Summary: The study found that PER-like beta-lactamases and NDM-like beta-lactamases significantly contributed to reduced susceptibility to Cefiderocol (FDC). The combination of FDC with avibactam exhibited excellent activity against multidrug-resistant isolates coproducing OXA-23 and PER-type beta-lactamases.

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2021)

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Guillermo Bahr et al.

Summary: Antimicrobial resistance is a major problem in current practical medicine, with the spread of genes coding for resistance determinants among bacteria challenging the use of antibiotics. Metallo-beta-lactamases play a central role in antibiotic resistance, with their diverse characteristics explored in the chemical, biochemical, and microbiological aspects.

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No in vitro activity of cefiderocol against OXA-427-producing Enterobacterales

Ann-Sophie Jacob et al.

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Activity of plazomicin against carbapenem-intermediate or -resistant Escherichia coli isolates from the United States and international sites in relation to clonal background, resistance genes, co-resistance, and region

Brian D. Johnston et al.

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JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2021)

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Rodrigo E. Mendes et al.

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Vasant Nagvekar et al.

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Marjolein C. Persoon et al.

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