4.7 Article

Genetic basis for the biodegradation of a polyether-polyurethane-acrylic copolymer by a landfill microbial community inferred by metagenomic deconvolution analysis

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Environmental Sciences

Biodegradability and ecotoxicity of polyurethane foams: A review

Katerina Sklenickova et al.

Summary: Polyurethane foams are highly demanded in various applications and it is important to study their environmental degradation and ecotoxicity. This review provides an overview of the environmental degradation of polyurethane foams, with a focus on their biodegradation behavior and ecotoxicity.

CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY (2022)

Article Multidisciplinary Sciences

Extracellular degradation of a polyurethane oligomer involving outer membrane vesicles and further insights on the degradation of 2,4-diaminotoluene in Pseudomonas capeferrum TDA1

Oscar Puiggene et al.

Summary: A strain of Pseudomonas capeferrum TDA1, isolated from a plastic dump site, has been found to possess the ability to degrade polyurethane (PU) compounds. The degradation pathway and mechanisms for PU degradation in this organism have been further explored.

SCIENTIFIC REPORTS (2022)

Article Biotechnology & Applied Microbiology

Concerted action of extracellular and cytoplasmic esterase and urethane-cleaving activities during Impranil biodegradation by Alicycliphilus denitrificans BQ1

Jacqueline Fuentes-Jaime et al.

Summary: The study examined the capability of Alicycliphilus denitrificans BQ1 to degrade the polyester polyurethane Impranil, and investigated the coordination between extracellular and cytoplasmic esterase and urethane-cleaving activities during the biodegradation process. The findings suggested different proteins are involved at different stages, and supported the concerted action of these enzymatic activities.

BIODEGRADATION (2022)

Review Biotechnology & Applied Microbiology

Biodegradation and up-cycling of polyurethanes: Progress, challenges, and prospects

Jiawei Liu et al.

Summary: This article discusses the global ranking and importance of polyurethanes, as well as their characteristics in terms of environmental factors and durability. It also highlights the need for proper disposal of polyurethane waste and the differences in polymer structure. Furthermore, it explores the discovery and application of polyurethane-degrading microbes and enzymes, as well as strategies for recycling and upcycling waste polymers.

BIOTECHNOLOGY ADVANCES (2021)

Review Environmental Sciences

Plastic biodegradation: Frontline microbes and their enzymes

Ayodeji Amobonye et al.

Summary: Plastic waste poses a serious threat to the environment, causing pollution, climate change, and disruption to aquatic ecosystems. Recent research has shifted focus to the potential of biological degradation of plastics, examining the roles of microorganisms and enzymes in this process.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

Article Biotechnology & Applied Microbiology

Degradability of poly(ether-urethanes) and poly(ether-urethane)/acrylic hybrids by bacterial consortia of soil

Paula A. Faccia et al.

Summary: An enrichment culture strategy was utilized to study the biodegradability of poly(ether-urethanes) (PUE) with natural consortia obtained from soil. The results showed that different PUE exhibited varying rates and modes of biodegradation under the influence of bacterial consortia, and the addition of 2-(diethylamino)ethyl methacrylate (DEA) could enhance the biodegradation of PUE, with multiple bacterial taxa possibly involved in the degradation pathways.

INTERNATIONAL BIODETERIORATION & BIODEGRADATION (2021)

Article Biotechnology & Applied Microbiology

Exploring the polyurethanolytic activity and microbial composition of landfill microbial communities

Martin Vargas-Suarez et al.

Summary: This study explored the impact of microenvironmental conditions on the biodegradative capacity and taxonomic composition of microbial communities in a landfill. Results showed that the composition of microbial communities was influenced by microenvironmental conditions, impacting their ability to degrade polyurethane waste and other xenobiotics. This research provides valuable insights into the potential use of microbial communities for the treatment of PU waste and other pollutants.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2021)

Article Biochemistry & Molecular Biology

KEGG Mapper for inferring cellular functions from protein sequences

Minoru Kanehisa et al.

PROTEIN SCIENCE (2020)

Article Biochemical Research Methods

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

Pierre-Alain Chaumeil et al.

BIOINFORMATICS (2020)

Article Biochemical Research Methods

KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold

Takuya Aramaki et al.

BIOINFORMATICS (2020)

Review Biotechnology & Applied Microbiology

Evaluation of biological degradation of polyurethanes

Audrey Magnin et al.

BIOTECHNOLOGY ADVANCES (2020)

Article Biotechnology & Applied Microbiology

Isolation and characterization of 2-butoxyethanol degrading bacterial strains

Christine Woiski et al.

BIODEGRADATION (2020)

Article Biochemical Research Methods

Dynamic metabolic adaptation can promote species coexistence in competitive microbial communities

Leonardo Pacciani-Mori et al.

PLoS Computational Biology (2020)

Review Polymer Science

Polyurethane Recycling and Disposal: Methods and Prospects

Aleksandra Kemona et al.

POLYMERS (2020)

Article Biotechnology & Applied Microbiology

Bifrost: highly parallel construction and indexing of colored and compacted de Bruijn graphs

Guillaume Holley et al.

GENOME BIOLOGY (2020)

Article Biotechnology & Applied Microbiology

Biodegradation of polyacrylic and polyester polyurethane coatings by enriched microbial communities

Martin Vargas-Suarez et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2019)

Article Biotechnology & Applied Microbiology

Isolation and characterization of different promising fungi for biological waste management of polyurethanes

Audrey Magnin et al.

MICROBIAL BIOTECHNOLOGY (2019)

Article Biochemical Research Methods

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen et al.

BIOINFORMATICS (2018)

Article Biochemical Research Methods

pyseer: a comprehensive tool for microbial pangenome-wide association studies

John A. Lees et al.

BIOINFORMATICS (2018)

Article Biotechnology & Applied Microbiology

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

Donovan H. Parks et al.

NATURE BIOTECHNOLOGY (2018)

Article Multidisciplinary Sciences

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

Chirag Jain et al.

NATURE COMMUNICATIONS (2018)

Article Biotechnology & Applied Microbiology

Novel Metabolic Pathway for N-Methylpyrrolidone Degradation in Alicycliphilus sp Strain BQ1

Claudia Julieta Solis-Gonzalez et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)

Article Biochemistry & Molecular Biology

metaSPAdes: a new versatile metagenomic assembler

Sergey Nurk et al.

GENOME RESEARCH (2017)

Article Multidisciplinary Sciences

Discovery of carbamate degrading enzymes by functional metagenomics

Lisa Ufarte et al.

PLOS ONE (2017)

Article Multidisciplinary Sciences

Production, use, and fate of all plastics ever made

Roland Geyer et al.

SCIENCE ADVANCES (2017)

Article Biotechnology & Applied Microbiology

Biodegradative Activities of Selected Environmental Fungi on a Polyester Polyurethane Varnish and Polyether Polyurethane Foams

Joyce Alvarez-Barragan et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)

Article Microbiology

Advenella alkanexedens sp nov., an alkane-degrading bacterium isolated from biogas slurry samples

Huimin Wang et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)

Article Polymer Science

Improving enzymatic polyurethane hydrolysis by tuning enzyme sorption

Caroline Gamerith et al.

POLYMER DEGRADATION AND STABILITY (2016)

Article Multidisciplinary Sciences

Fast and sensitive taxonomic classification for metagenomics with Kaiju

Peter Menzel et al.

NATURE COMMUNICATIONS (2016)

Article Multidisciplinary Sciences

The lag-phase during diauxic growth is a trade-off between fast adaptation and high growth rate

Dominique Chu et al.

SCIENTIFIC REPORTS (2016)

Review Chemistry, Multidisciplinary

Polyurethane types, synthesis and applications - a review

John O. Akindoyo et al.

RSC ADVANCES (2016)

Article Biotechnology & Applied Microbiology

Mash: fast genome and metagenome distance estimation using MinHash

Brian D. Ondov et al.

GENOME BIOLOGY (2016)

Review Biochemistry & Molecular Biology

A Comprehensive Review of Aliphatic Hydrocarbon Biodegradation by Bacteria

Firouz Abbasian et al.

APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY (2015)

Article Biochemistry & Molecular Biology

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks et al.

GENOME RESEARCH (2015)

Article Energy & Fuels

Effects of indigenous microbial consortia for enhanced oil recovery in a fragmented calcite rocks system

I. Gaytan et al.

JOURNAL OF PETROLEUM SCIENCE AND ENGINEERING (2015)

Review Chemistry, Multidisciplinary

New insights into the microbial degradation of polyurethanes

Neha Mahajan et al.

RSC ADVANCES (2015)

Article Biochemical Research Methods

QUAST: quality assessment tool for genome assemblies

Alexey Gurevich et al.

BIOINFORMATICS (2013)

Article Polymer Science

In-vivo degradation of poly(carbonate-urethane) based spine implants

E. Cipriani et al.

POLYMER DEGRADATION AND STABILITY (2013)

Review Microbiology

Enzymes and genes involved in aerobic alkane degradation

Wanpeng Wang et al.

FRONTIERS IN MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

Identification of DypB from Rhodococcus jostii RHA1 as a Lignin Peroxidase

Mark Ahmad et al.

BIOCHEMISTRY (2011)

Review Biochemistry & Molecular Biology

Alkane-oxidizing metalloenzymes in the carbon cycle

Rachel Narehood Austin et al.

METALLOMICS (2011)

Article Biotechnology & Applied Microbiology

Could petroleum biodegradation be a joint achievement of aerobic and anaerobic microrganisms in deep sea reservoirs?

Georgiana F. da Cruz et al.

AMB EXPRESS (2011)

Review Polymer Science

Polyurethane Waste Reduction and Recycling: From Bench to Pilot Scales

Mir Mohammad Alavi Nikje et al.

DESIGNED MONOMERS AND POLYMERS (2011)

Article Biochemical Research Methods

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt et al.

BMC BIOINFORMATICS (2010)

Review Microbiology

Degradation of alkanes by bacteria

Fernando Rojo

ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Degradation of polyurethane by novel bacterial consortium isolated from soil

Aamer Ali Shah et al.

ANNALS OF MICROBIOLOGY (2008)

Article Biotechnology & Applied Microbiology

Fungal communities associated with degradation of polyester polyurethane in soil

Lee Cosgrove et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Biochemistry & Molecular Biology

KAAS: an automatic genome annotation and pathway reconstruction server

Yuki Moriya et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Microbiology

Novel acetone metabolism in a propane-utilizing bacterium, Gordonia sp strain TY-5

Tetsuya Kotani et al.

JOURNAL OF BACTERIOLOGY (2007)

Review Biochemistry & Molecular Biology

Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds

Eiji Masai et al.

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2007)

Article Biotechnology & Applied Microbiology

A new ether bond-splitting enzyme found in Gram-positive polyethylene glycol 6000-utilizing bacterium, Pseudonocardia sp strain K1

M Yamashita et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2004)