Application of referenced thermodynamic integration to Bayesian model selection

Evaluating normalising constants is important across a range of topics in statistical learning, notably Bayesian model selection. However, in many realistic problems this involves the integration of analytically intractable, high-dimensional distributions, and therefore requires the use of stochastic methods such as thermodynamic integration (TI). In this paper we apply a simple but under-appreciated variation of the TI method, here referred to as referenced TI, which computes a single model's normalising constant in an efficient way by using a judiciously chosen reference density. The advantages of the approach and theoretical considerations are set out, along with pedagogical 1 and 2D examples. The approach is shown to be useful in practice when applied to a real problem -to perform model selection for a semi-mechanistic hierarchical Bayesian model of COVID-19 transmission in South Korea involving the integration of a 200D density.

Automated summary

This paper introduces a method called referenced TI, which computes a single model's normalising constant efficiently by using a judiciously chosen reference density to solve the integration problem of high-dimensional distributions in realistic problems. The method is shown to be useful in practice when applied to model selection for a semi-mechanistic hierarchical Bayesian model of COVID-19 transmission in South Korea.