4.8 Article

The regulation of chromatin configuration at AGAMOUS locus by LFR-SYD-containing complex is critical for reproductive organ development in Arabidopsis

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Conserved H3K27me3-associated chromatin looping mediates physical interactions of gene clusters in plants

Linhua Sun et al.

Summary: Higher-order chromatin organization plays important roles in transcriptional regulation and genome functions. This study identified and characterized long-range chromatin loops in the Arabidopsis 3D genome and found their association with H3K27me3 modifications. These chromatin loops are dependent on Polycomb group proteins and are involved in tissue-specific and dynamically regulated gene expression. The conservation of these chromatin loops in other plant species suggests their importance in genome evolution and transcriptional coregulation.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2023)

Article Biochemistry & Molecular Biology

Organization, genomic targeting, and assembly of three distinct SWI/SNF chromatin remodeling complexes in Arabidopsis

Wei Fu et al.

Summary: Three Arabidopsis SWI/SNF chromatin remodeling complexes, BAS, SAS, and MAS, have unique and shared roles, distinct organization, genomic targeting, and assembly.

PLANT CELL (2023)

Article Plant Sciences

Arabidopsis LFR, a SWI/SNF complex component, interacts with ICE1 and activates ICE1 and CBF3 expression in cold acclimation

Tian Ma et al.

Summary: In this study, the mutation of LFR in Arabidopsis resulted in hypersensitivity to freezing stress and reduced expression levels of CBFs and COR genes. LFR was found to interact directly with ICE1 and activate ICE1 and CBF3 gene expression in response to cold stress.

FRONTIERS IN PLANT SCIENCE (2023)

Review Biochemistry & Molecular Biology

Chromatin-remodeling complexes: Conserved and plant-specific subunits in Arabidopsis

Ji-Yun Shang et al.

Summary: Adenosine triphosphate-dependent chromatin remodeling complexes play a crucial role in transcription, DNA replication, and genome stability regulation in eukaryotes. However, the study of chromatin remodeling complexes in plants lags behind yeast and animals. Recent research has identified and characterized the composition and function of chromatin remodeling enzymes in Arabidopsis, providing a foundation for further investigation into the molecular mechanisms.

JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2022)

Letter Biochemistry & Molecular Biology

H2A.Z contributes to trithorax activity at the AGAMOUS locus

Un-Sa Lee et al.

MOLECULAR PLANT (2022)

Article Biochemistry & Molecular Biology

The TRIPLE PHD FINGERS proteins are required for SWI/SNF complex-mediated+1 nucleosome positioning and transcription start site determination in Arabidopsis

Borja Diego-Martin et al.

Summary: This study reveals the function of a plant SWI/SNF complex involved in +1 nucleosome positioning and transcription start site determination, and its functional connection with the change in 5' transcript length.

NUCLEIC ACIDS RESEARCH (2022)

Article Biochemistry & Molecular Biology

Chromatin remodeling complexes regulate genome architecture in Arabidopsis

Tingting Yang et al.

Summary: Chromatin remodeling complexes regulate the distribution and density of nucleosomes to maintain a high level of H3K27me3, which prevents compartment switching. This study provides insights into the mechanisms by which diverse ATP-dependent chromatin remodeling complexes regulate the 3D chromatin structure in plants.

PLANT CELL (2022)

Article Plant Sciences

Genome-wide occupancy of Arabidopsis SWI/SNF chromatin remodeler SPLAYED provides insights into its interplay with its close homolog BRAHMA and Polycomb proteins

Jie Shu et al.

Summary: SYD, a SWI/SNF chromatin remodeler, plays crucial roles in plant growth and development. It preferentially targets nucleosome-free regions of expressed genes and exhibits five distinct patterns in occupancy peaks. SYD may act antagonistically or synergistically with PcG proteins at specific genes.

PLANT JOURNAL (2021)

Editorial Material Biochemistry & Molecular Biology

New partners for old friends: Plant SWI/SNF complexes

Juan S. Ramirez-Prado et al.

MOLECULAR PLANT (2021)

Article Biochemistry & Molecular Biology

Bromodomain-containing proteins BRD1, BRD2, and BRD13 are core subunits of SWI/SNF complexes and vital for their genomic targeting in Arabidopsis

Yaoguang Yu et al.

Summary: The Arabidopsis thaliana bromodomain-containing proteins BRD1, BRD2, and BRD13 are core subunits of SWI/SNF complexes and play critical roles in genomic targeting. These BRDs interact directly with multiple SWI/SNF subunits, including the BRAHMA (BRM) catalytic subunit, to control gene expression and developmental processes. The bromodomains of BRDs are essential for genomic targeting of SWI/SNF complexes.

MOLECULAR PLANT (2021)

Review Plant Sciences

One factor, many systems: the floral homeotic protein AGAMOUS and its epigenetic regulatory mechanisms

Margaret Anne Pelayo et al.

Summary: AGAMOUS is a crucial MADS-box transcription factor in Arabidopsis, playing a central role in flower development. During the reproductive phase, AG transcription is spatiotemporally regulated and works with chromatin regulators to alter the chromatin structure at key gene loci, affecting cell fate.

CURRENT OPINION IN PLANT BIOLOGY (2021)

Article Plant Sciences

LFR Physically and Genetically Interacts With SWI/SNF Component SWI3B to Regulate Leaf Blade Development in Arabidopsis

Xiaowei Lin et al.

Summary: This study reveals the interaction between the Leaf and Flower Related (LFR) protein and SWI3B component of the chromatin-remodeling complex, highlighting their role in regulating transcription factors and auxin metabolism enzymes during Arabidopsis leaf development. Inhibition of SWI3B resulted in a leaf phenotype similar to the loss-of-function mutants of LFR, indicating their collaborative function in leaf development. The findings demonstrate the importance of LFR-SWI3B interaction in influencing gene expression and leaf morphology.

FRONTIERS IN PLANT SCIENCE (2021)

Article Biochemistry & Molecular Biology

Bromodomain-containing subunits BRD1, BRD2, and BRD13 are required for proper functioning of SWI/SNF complexes in Arabidopsis

Kamila Jaronczyk et al.

Summary: SWI/SNF chromatin remodelers are evolutionarily conserved multiprotein complexes that use ATP hydrolysis to change chromatin structure. Arabidopsis bromodomain-containing proteins BRD1, BRD2, and BRD13 are likely true SWI/SNF subunits with functional redundancy, cooperating with the bromodomain of BRM ATPase. Loss of function of BRD proteins led to developmental abnormalities similar to SWI/SNF mutants.

PLANT COMMUNICATIONS (2021)

Article Multidisciplinary Sciences

Structure of nucleosome-bound human BAF complex

Shuang He et al.

SCIENCE (2020)

Article Biochemistry & Molecular Biology

A Structural Model of the Endogenous Human BAF Complex Informs Disease Mechanisms

Nazar Mashtalir et al.

Editorial Material Biochemistry & Molecular Biology

Genes Directing Flower Development in Arabidopsis

Liz Dennis et al.

PLANT CELL (2019)

Article Biochemistry & Molecular Biology

Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development

Yuki Ogiyama et al.

MOLECULAR CELL (2018)

Article Plant Sciences

A chromatin loop represses WUSCHEL expression in Arabidopsis

Lin Guo et al.

PLANT JOURNAL (2018)

Article Biochemistry & Molecular Biology

Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression

Rafal Archacki et al.

NUCLEIC ACIDS RESEARCH (2017)

Review Plant Sciences

The Role of SWI/SNF Chromatin Remodeling Complexes in Hormone Crosstalk

Elzbieta Sarnowska et al.

TRENDS IN PLANT SCIENCE (2016)

Article Plant Sciences

Roles and activities of chromatin remodeling ATPases in plants

Soon-Ki Han et al.

PLANT JOURNAL (2015)

Editorial Material Biochemistry & Molecular Biology

The Many Faces of Plant SWI/SNF Complex

Jose C. Reyes

MOLECULAR PLANT (2014)

Review Biochemistry & Molecular Biology

Functional implications of genome topology

Giacomo Cavalli et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Article Multidisciplinary Sciences

SWI2/SNF2 chromatin remodeling ATPases overcome polycomb repression and control floral organ identity with the LEAFY and SEPALLATA3 transcription factors

Miin-Feng Wu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Cell Biology

The ABC model and the diversification of floral organ identity

Amy Litt et al.

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2010)

Review Biochemistry & Molecular Biology

The Biology of Chromatin Remodeling Complexes

Cedric R. Clapier et al.

ANNUAL REVIEW OF BIOCHEMISTRY (2009)

Review Biochemistry & Molecular Biology

SWI/SNF chromatin remodeling and linker histones in plants

Andrzej Jerzmanowski

BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION (2007)

Article Genetics & Heredity

Genome-wide analysis of gene expression during early Arabidopsis flower development

Frank Wellmer et al.

PLOS GENETICS (2006)

Review Genetics & Heredity

Molecular mechanisms of flower development: An armchair guide

BA Krizek et al.

NATURE REVIEWS GENETICS (2005)

Review Plant Sciences

Chromatin regulation of plant development

D Wagner

CURRENT OPINION IN PLANT BIOLOGY (2003)

Article Multidisciplinary Sciences

Significance analysis of microarrays applied to the ionizing radiation response

VG Tusher et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)