4.7 Review

Evolution, genomics and epidemiology of Pseudomonas syringae: Challenges in Bacterial Molecular Plant Pathology

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Ecology

The effect of genetic structure on molecular dating and tests for temporal signal

Gemma G. R. Murray et al.

METHODS IN ECOLOGY AND EVOLUTION (2016)

Review Biochemistry & Molecular Biology

Inferences from tip-calibrated phylogenies: a review and a practical guide

Adrien Rieux et al.

MOLECULAR ECOLOGY (2016)

Review Biochemistry & Molecular Biology

Divorcing Strain Classification from Species Names

David A. Baltrus

TRENDS IN MICROBIOLOGY (2016)

Review Biochemistry & Molecular Biology

Pseudomonas aeruginosa Evolutionary Adaptation and Diversification in Cystic Fibrosis Chronic Lung Infections

Craig Winstanley et al.

TRENDS IN MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

Genome analysis of the kiwifruit canker pathogen Pseudomonas syringae pv. actinidiae biovar 5

Takashi Fujikawa et al.

SCIENTIFIC REPORTS (2016)

Article Critical Care Medicine

Divergent, Coexisting Pseudomonas aeruginosa Lineages in Chronic Cystic Fibrosis Lung Infections

David Williams et al.

AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2015)

Article Microbiology

Regional Isolation Drives Bacterial Diversification within Cystic Fibrosis Lungs

Peter Jorth et al.

CELL HOST & MICROBE (2015)

Review Microbiology

The advent of genome-wide association studies for bacteria

Peter E. Chen et al.

CURRENT OPINION IN MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data

Sebastian Duchene et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Review Microbiology

Outer-membrane vesicles from Gram-negative bacteria: biogenesis and functions

Carmen Schwechheimer et al.

NATURE REVIEWS MICROBIOLOGY (2015)

Article Biology

The evolution of bacterial resistance against bacteriophages in the horse chestnut phyllosphere is general across both space and time

Britt Koskella et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)

Review Biology

Genomic perspectives on the evolution and spread of bacterial pathogens

Stephen D. Bentley et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)

Article Ecology

Measurably evolving pathogens in the genomic era

Roman Biek et al.

TRENDS IN ECOLOGY & EVOLUTION (2015)

Article Multidisciplinary Sciences

Co-infection alters population dynamics of infectious disease

Hanna Susi et al.

Nature Communications (2015)

Article Genetics & Heredity

The Role of China in the Global Spread of the Current Cholera Pandemic

Xavier Didelot et al.

PLOS GENETICS (2015)

Article Genetics & Heredity

Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis

Rasmus Lykke Marvig et al.

NATURE GENETICS (2015)

Review Plant Sciences

Harnessing Population Genomics to Understand How Bacterial Pathogens Emerge, Adapt to Crop Hosts, and Disseminate

Boris A. Vinatzer et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 52 (2014)

Article Evolutionary Biology

The Extent of Genome Flux and Its Role in the Differentiation of Bacterial Lineages

Reuben W. Nowell et al.

GENOME BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

Diversity and abundance of phyllosphere bacteria are linked to insect herbivory

Parris T. Humphrey et al.

MOLECULAR ECOLOGY (2014)

Article Multidisciplinary Sciences

The long-term maintenance of a resistance polymorphism through diffuse interactions

Talia L. Karasov et al.

NATURE (2014)

Article Genetics & Heredity

Dense genomic sampling identifies highways of pneumococcal recombination

Claire Chewapreecha et al.

NATURE GENETICS (2014)

Article Multidisciplinary Sciences

Evaluation of Whole Genome Sequencing for Outbreak Detection of Salmonella enterica

Pimlapas Leekitcharoenphon et al.

PLOS ONE (2014)

Review Immunology

Plant pattern-recognition receptors

Cyril Zipfel

TRENDS IN IMMUNOLOGY (2014)

Review Biochemistry & Molecular Biology

Ordering microbial diversity into ecologically and genetically cohesive units

B. Jesse Shapiro et al.

TRENDS IN MICROBIOLOGY (2014)

Article Biology

INSIGHTS FROM GENOMICS INTO BACTERIAL PATHOGEN POPULATIONS

Daniel J. Wilson

OMICS IN CLINICAL PRACTICE: GENOMICS, PHARMACOGENOMICS, PROTEOMICS, AND TRANSCRIPTOMICS IN CLINICAL RESEARCH (2014)

Review Plant Sciences

The Life History of Pseudomonas syringae: Linking Agriculture to Earth System Processes

Cindy E. Morris et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 51 (2013)

Article Biotechnology & Applied Microbiology

Explaining microbial phenotypes on a genomic scale: GWAS for microbes

Bas E. Dutilh et al.

BRIEFINGS IN FUNCTIONAL GENOMICS (2013)

Article Biochemistry & Molecular Biology

Phage-Mediated Selection on Microbiota of a Long-Lived Host

Britt Koskella

CURRENT BIOLOGY (2013)

Review Infectious Diseases

Candida albicans and Pseudomonas aeruginosa interactions: More than an opportunistic criminal association?

J. -B. Mear et al.

MEDECINE ET MALADIES INFECTIEUSES (2013)

Article Multidisciplinary Sciences

Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis

Yujun Cui et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

Samuel K. Sheppard et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Marine bacteria exhibit a bipolar distribution

Woo Jun Sul et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biotechnology & Applied Microbiology

Forward Genetic In Planta Screen for Identification of Plant-Protective Traits of Sphingomonas sp Strain Fr1 against Pseudomonas syringae DC3000

Christine Vogel et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Review Biochemistry & Molecular Biology

Pseudomonas syringae type III effector repertoires: last words in endless arguments

Magdalen Lindeberg et al.

TRENDS IN MICROBIOLOGY (2012)

Review Microbiology

Insights from Genomics into Bacterial Pathogen Populations

Daniel J. Wilson

PLOS PATHOGENS (2012)

Review Plant Sciences

Evolution of Plant Pathogenesis in Pseudomonas syringae: A Genomics Perspective

Heath E. O'Brien et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 49 (2011)

Article Biotechnology & Applied Microbiology

Protection of Arabidopsis thaliana against Leaf-Pathogenic Pseudomonas syringae by Sphingomonas Strains in a Controlled Model System

Gerd Innerebner et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Review Microbiology

Next-generation genomics of Pseudomonas syringae

Heath E. O'Brien et al.

CURRENT OPINION IN MICROBIOLOGY (2011)

Article Multidisciplinary Sciences

Evidence for several waves of global transmission in the seventh cholera pandemic

Ankur Mutreja et al.

NATURE (2011)

Article Multidisciplinary Sciences

Helicobacter pylori genome evolution during human infection

Lynn Kennemann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Rapid Pneumococcal Evolution in Response to Clinical Interventions

Nicholas J. Croucher et al.

SCIENCE (2011)

Article Environmental Sciences

Pseudomonas fluorescens BBc6R8 type III secretion mutants no longer promote ectomycorrhizal symbiosis

Angela M. Cusano et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2011)

Review Infectious Diseases

Bacterial hypermutation in cystic fibrosis, not only for antibiotic resistance

A. Oliver et al.

CLINICAL MICROBIOLOGY AND INFECTION (2010)

Article Genetics & Heredity

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

Giovanna Morelli et al.

NATURE GENETICS (2010)

Article Multidisciplinary Sciences

Evolutionary dynamics of Clostridium difficile over short and long time scales

Miao He et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemical Research Methods

Why Genes Evolve Faster on Secondary Chromosomes in Bacteria

Vaughn S. Cooper et al.

PLOS COMPUTATIONAL BIOLOGY (2010)

Review Biochemistry & Molecular Biology

On the origin of prokaryotic species

W. Ford Doolittle et al.

GENOME RESEARCH (2009)

Article Multidisciplinary Sciences

The impact of long-distance horizontal gene transfer on prokaryotic genome size

Otto X. Cordero et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Review Biotechnology & Applied Microbiology

Classification of Bacteria and Archaea: Past, present and future

Karl Heinz Schleifer

SYSTEMATIC AND APPLIED MICROBIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Role of recombination in the evolution of the model plant pathogen Pseudomonas syringae pv. tomato DC3000, a very atypical tomato strain

Shuangchun Yan et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Review Biochemistry & Molecular Biology

The Origins of Ecological Diversity in Prokaryotes

Frederick M. Cohan et al.

CURRENT BIOLOGY (2008)

Review Biochemistry & Molecular Biology

A novel gene, phcA from Pseudomonas syringae induces programmed cell death in the filamentous fungus Neurospora crassa

Gale Wichmann et al.

MOLECULAR MICROBIOLOGY (2008)

Article Multidisciplinary Sciences

Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics

Alexander Koeppel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Biotechnology & Applied Microbiology

An overview of bacterial nomenclature with special reference to plant pathogens

J. M. Young

SYSTEMATIC AND APPLIED MICROBIOLOGY (2008)

Article Evolutionary Biology

Species concepts and species delimitation

Kevin De Queiroz

SYSTEMATIC BIOLOGY (2007)

Article Multidisciplinary Sciences

Temporal fragmentation of speciation in bacteria

Adam C. Retchless et al.

SCIENCE (2007)

Review Microbiology

The nineteenth century roots of 'everything is everywhere'

Maureen A. O'Malley

NATURE REVIEWS MICROBIOLOGY (2007)

Article Biochemistry & Molecular Biology

Virulence is positively selected by transmission success between mammalian hosts

Mark E. Wickham et al.

CURRENT BIOLOGY (2007)

Review Microbiology

The disease triangle: pathogens, the environment and society

Karen-Beth G. Scholthof

NATURE REVIEWS MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Phylogenetic analysis of the pPT23A plasmid family of Pseudomonas syringae

Zhonghua Ma et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Review Multidisciplinary Sciences

Recombination and the nature of bacterial speciation

Christophe Fraser et al.

SCIENCE (2007)

Article Infectious Diseases

Surprising niche for the plant pathogen Pseudomonas syringae

Cindy E. Morris et al.

INFECTION GENETICS AND EVOLUTION (2007)

Review Agriculture, Multidisciplinary

The epidemiology and management of bacterial blight (Pseudomonas syringae pv. pisi) of field pea (Pisum sativum) in Australia: a review

G. J. Hollaway et al.

AUSTRALIAN JOURNAL OF AGRICULTURAL RESEARCH (2007)

Article Biology

Sequences, sequence clusters and bacterial species

William P. Hanage et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)

Article Biology

Modelling bacterial speciation

William P. Hanage et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)

Review Multidisciplinary Sciences

The plant immune system

Jonathan D. G. Jones et al.

NATURE (2006)

Article Biotechnology & Applied Microbiology

Role of nucleotide excision repair and photoreactivation in the solar UVB radiation survival of Pseudomonas syringae pv. syringae B728a

T. S. Gunasekera et al.

JOURNAL OF APPLIED MICROBIOLOGY (2006)

Article Multidisciplinary Sciences

Presence/absence polymorphism for alternative pathogenicity islands in Pseudomonas viridiflava, a pathogen of Arabidopsis

H Araki et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biology

The impact of homologous recombination on the generation of diversity in bacteria

WP Hanage et al.

JOURNAL OF THEORETICAL BIOLOGY (2006)

Article Biotechnology & Applied Microbiology

Phylogenetic characterization of virulence and resistance phenotypes of Pseudomonas syringae

MSH Hwang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Microbiology

Comparative genomic analysis of the pPT23A plasmid family of Pseudomonas syringae

YF Zhao et al.

JOURNAL OF BACTERIOLOGY (2005)

Review Microbiology

Re-evaluating prokaryotic species

D Gevers et al.

NATURE REVIEWS MICROBIOLOGY (2005)

Article Biotechnology & Applied Microbiology

Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen

SF Sarkar et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)

Article Multidisciplinary Sciences

Trends between gene content and genome size in prokaryotic species with larger genomes

KT Konstantinidis et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Plant Sciences

Factors that affect spread of Pseudomonas syringae in the phyllosphere

CD Upper et al.

PHYTOPATHOLOGY (2003)

Review Multidisciplinary Sciences

Plant pathogens and integrated defence responses to infection

JL Dangl et al.

NATURE (2001)

Review Microbiology

Bacteria in the leaf ecosystem with emphasis on Pseudomonas syringae - a pathogen, ice nucleus, and epiphyte

SS Hirano et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)