相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights
Changwei Shao et al.
CELL (2023)
Comprehensive phylogenomic analyses reveal that order Armophorida is most closely related to class Armophorea (Protista, Ciliophora)
Jia Li et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2023)
Giant Viruses Encode Actin-Related Proteins
Violette Da Cunha et al.
MOLECULAR BIOLOGY AND EVOLUTION (2022)
Recent Advances in Ciliate Biology
Rachel A. Howard-Till et al.
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY (2022)
Group-specific functional patterns of mitochondrion-related organelles shed light on their multiple transitions from mitochondria in ciliated protists
Zhicheng Chen et al.
MARINE LIFE SCIENCE & TECHNOLOGY (2022)
The hidden genomic diversity of ciliated protists revealed by single-cell genome sequencing
Wenbing Chen et al.
BMC BIOLOGY (2021)
MEGA11 Molecular Evolutionary Genetics Analysis Version 11
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
Dong Zhang et al.
MOLECULAR ECOLOGY RESOURCES (2020)
Evaluating the performance of targeted sequence capture, RNA-Seq, and degenerate-primer PCR cloning for sequencing the largest mammalian multigene family
Laurel R. Yohe et al.
MOLECULAR ECOLOGY RESOURCES (2020)
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Conjugation in Euplotes raikovi (Protista, Ciliophora): New Insights into Nuclear Events and Macronuclear Development from Micronucleate and Amicronucleate Cells
Ruitao Gong et al.
MICROORGANISMS (2020)
Genomics of New Ciliate Lineages Provides Insight into the Evolution of Obligate Anaerobiosis
Johana Rotterova et al.
CURRENT BIOLOGY (2020)
The evolution of ADAM gene family in eukaryotes
J. S. M. Souza et al.
GENOMICS (2020)
The complexity and diversity of the actin cytoskeleton of trypanosomatids
Andrea Vizcaino-Castillo et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2020)
Genome-wide expression analysis suggests glutaredoxin genes response to various stresses in cotton
Waqar Afzal Malik et al.
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES (2020)
TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
Chengjie Chen et al.
MOLECULAR PLANT (2020)
The actin cytoskeleton orchestra inEntamoeba histolytica
Pragyan Parimita Rath et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2020)
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
Sina M. Adl et al.
JOURNAL OF EUKARYOTIC MICROBIOLOGY (2019)
Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)
Xin Gong et al.
BMC PLANT BIOLOGY (2019)
Genome-Wide Identification and Characterization of the PERK Gene Family in Gossypium hirsutum Reveals Gene Duplication and Functional Divergence
Ghulam Qanmber et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)
Genome analyses of the new model protist Euplotes vannus focusing on genome rearrangement and resistance to environmental stressors
Xiao Chen et al.
MOLECULAR ECOLOGY RESOURCES (2019)
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2019)
Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates
Ying Yan et al.
MBIO (2019)
Novel subfamilies of actin-regulating proteins
A. A. Morozov et al.
MARINE GENOMICS (2018)
GPSit: An automated method for evolutionary analysis of nonculturable ciliated microeukaryotes
Xiao Chen et al.
MOLECULAR ECOLOGY RESOURCES (2018)
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Andrew Rambaut et al.
SYSTEMATIC BIOLOGY (2018)
Gene duplication and the evolution of phenotypic diversity in insect societies
Linh M. Chau et al.
EVOLUTION (2017)
Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda
Seong-il Eyun et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Evolution of polymer formation within the actin superfamily
Patrick R. Stoddard et al.
MOLECULAR BIOLOGY OF THE CELL (2017)
Early stages of functional diversification in the Rab GTPase gene family revealed by genomic and localization studies in Paramecium species
Lydia J. Bright et al.
MOLECULAR BIOLOGY OF THE CELL (2017)
Genome-wide analysis of WOX genes in upland cotton and their expression pattern under different stresses
Zhaoen Yang et al.
BMC PLANT BIOLOGY (2017)
The Anti-Oxidant Defense System of the Marine Polar Ciliate Euplotes nobilii: Characterization of the MsrB Gene Family
Francesca Ricci et al.
BIOLOGY-BASEL (2017)
Actin evolution in ciliates (Protist, Alveolata) is characterized by high diversity and three duplication events
Zhenzhen Yi et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)
Divergence in Enzymatic Activities in the Soybean GST Supergene Family Provides New Insight into the Evolutionary Dynamics of Whole-Genome Duplicates
Hai-Jing Liu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
GSDS 2.0: an upgraded gene feature visualization server
Bo Hu et al.
BIOINFORMATICS (2015)
AliView: a fast and lightweight alignment viewer and editor for large datasets
Anders Larsson
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Soybean (Glycine max) expansin gene superfamily origins: segmental and tandem duplication events followed by divergent selection among subfamilies
Yan Zhu et al.
BMC PLANT BIOLOGY (2014)
Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time
Gavin C. Conant et al.
CURRENT OPINION IN PLANT BIOLOGY (2014)
Six Subgroups and Extensive Recent Duplications Characterize the Evolution of the Eukaryotic Tubulin Protein Family
Peggy Findeisen et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Differential retention and divergent resolution of duplicate genes following whole-genome duplication
Casey L. McGrath et al.
GENOME RESEARCH (2014)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes
Estienne C. Swart et al.
PLOS BIOLOGY (2013)
Dynamic Actin Gene Family Evolution in Primates
Liucun Zhu et al.
BIOMED RESEARCH INTERNATIONAL (2013)
ParaAT: A parallel tool for constructing multiple protein-coding DNA alignments
Zhang Zhang et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2012)
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang et al.
NUCLEIC ACIDS RESEARCH (2012)
Plant Vegetative and Animal Cytoplasmic Actins Share Functional Competence for Spatial Development with Protists
Muthugapatti K. Kandasamy et al.
PLANT CELL (2012)
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
Fredrik Ronquist et al.
SYSTEMATIC BIOLOGY (2012)
Multiple actin isotypes in plants: diverse genes for diverse roles?
Katerina Slajcherova et al.
FRONTIERS IN PLANT SCIENCE (2012)
Dynamics of Actin Evolution in Dinoflagellates
Sunju Kim et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
HMMER web server: interactive sequence similarity searching
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2011)
Genome-wide identification and evolution of ATP-binding cassette transporters in the ciliate Tetrahymena thermophila: A case of functional divergence in a multigene family
Jie Xiong et al.
BMC EVOLUTIONARY BIOLOGY (2010)
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
Alexis Criscuolo et al.
BMC EVOLUTIONARY BIOLOGY (2010)
The Actin Gene Family: Function Follows Isoform
Benjamin J. Perrin et al.
CYTOSKELETON (2010)
SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
Manolo Gouy et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
The actin multigene family in Populus: organization, expression and phylogenetic analysis
Deqiang Zhang et al.
MOLECULAR GENETICS AND GENOMICS (2010)
Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition
Michael Freeling
ANNUAL REVIEW OF PLANT BIOLOGY (2009)
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
Nicolas Lartillot et al.
BIOINFORMATICS (2009)
Nuclear actin and actin-binding proteins in the regulation of transcription and gene expression
Bin Zheng et al.
FEBS JOURNAL (2009)
Turning a hobby into a job: How duplicated genes find new functions
Gavin C. Conant et al.
NATURE REVIEWS GENETICS (2008)
The Actinome of Dictyostelium discoideum in Comparison to Actins and Actin-Related Proteins from Other Organisms
Jayabalan M. Joseph et al.
PLOS ONE (2008)
The actin multigene family of Paramecium tetraurelia
Ivonne M. Sehring et al.
BMC GENOMICS (2007)
A broad spectrum of actin paralogs in Paramecium tetraurelia cells display differential localization and function
Ivonne M. Sehring et al.
JOURNAL OF CELL SCIENCE (2007)
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
Jean-Marc Aury et al.
NATURE (2006)
Genome architecture drives protein evolution in ciliates
Rebecca A. Zufall et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Harnessing actin dynamics for clathrin-mediated endocytosis
Marko Kaksonen et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)
Sequence and comparative genomic analysis of actin-related proteins
J Muller et al.
MOLECULAR BIOLOGY OF THE CELL (2005)
Plant actin-related proteins
MK Kandasamy et al.
TRENDS IN PLANT SCIENCE (2004)
Highly divergent actins from karyorelictean, heterotrich, and litostome ciliates
OTP Kim et al.
JOURNAL OF EUKARYOTIC MICROBIOLOGY (2004)
Dramatic diversity of ciliate histone H4 genes revealed by comparisons of patterns of substitutions and paralog divergences among eukaryotes
LA Katz et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Mechanisms underlying the evolution and maintenance of functionally heterogeneous 18S rRNA genes in apicomplexans
AP Rooney
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Actin and ARPs: action in the nucleus
CA Blessing et al.
TRENDS IN CELL BIOLOGY (2004)
The nuclear actin-related proteins Arp7 and Arp9: a dimeric module that cooperates with architectural proteins for chromatin remodeling
H Szerlong et al.
EMBO JOURNAL (2003)
Evolution by gene duplication: an update
JZ Zhang
TRENDS IN ECOLOGY & EVOLUTION (2003)
Evolution of IESs and scrambling in the actin I gene in hypotrichous ciliates
DJ Hogan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
The evolutionary fate and consequences of duplicate genes
M Lynch et al.
SCIENCE (2000)