4.7 Article

Diversification of freshwater crabs on the sky islands in the Hengduan Mountains Region, China

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Climate-driven convergent evolution in riparian ecosystems on sky islands

S. J. Love et al.

Summary: Climate-induced evolution will determine population persistence in a changing world. We propose that isolated sky islands and adjacent mountain chains are natural laboratories for studying long-term and contemporary climatic pressures on natural populations. Our study showed that populations on sky islands have diverged from mountain chains in reproductive and productivity traits, with some convergence across sky islands. These shifts represent potentially beneficial phenotypes for population persistence in a changing world.

SCIENTIFIC REPORTS (2023)

Article Zoology

Phylogeography of the true freshwater crab, Geothelphusa dehaani: Detected dual dispersal routes via land and sea

Masaki Takenaka et al.

Summary: This study focuses on the evolutionary history and dispersal patterns of true freshwater crabs. Through genetic analysis, several cryptic species or undescribed species were discovered, and completely different dispersal pathways were identified. The results suggest that although Japanese crabs are generally genetically divided by straits, there is strong evidence of dispersion through ocean currents.

ZOOLOGY (2023)

Article Ecology

Identifying traits that enable lizard adaptation to different habitats

Flavia M. Lanna et al.

Summary: Species adapt differently to contrasting environments, with transitions from forested to open habitats being most common. Integrating phylogenetic reconstruction and a machine learning framework allows for the integration of organismal traits, environmental data, and evolutionary history on a global scale.

JOURNAL OF BIOGEOGRAPHY (2022)

Review Plant Sciences

Species divergence with gene flow and hybrid speciation on the Qinghai-Tibet Plateau

Shengdan Wu et al.

Summary: The Qinghai-Tibet Plateau is a region with rich species diversity, where geographic isolation, natural selection, and hybridization have played important roles in promoting species divergence and diversification. It is important to identify and functionally analyze the major genes involved in speciation, and to investigate parallel adaptive divergence causing reproductive isolation among different lineages within specific habitats in this region.

NEW PHYTOLOGIST (2022)

Article Biology

Drivers of diversification in freshwater gastropods vary over deep time

Thomas A. Neubauer et al.

Summary: Understanding the drivers of species diversification over geological time is crucial for our knowledge of long-term evolutionary processes. This study used a large fossil dataset, a multivariate birth-death model, and a comprehensive set of biotic and abiotic predictors to estimate the drivers of diversification for European freshwater gastropods over the past 100 million years. The results showed temporal heterogeneity in the factors influencing diversification rates, with diversity-dependence and topography consistently playing important roles.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2022)

Article Zoology

Rapid genetic divergence and mitonuclear discordance in the Taliang knobby newt (Liangshantriton taliangensis, Salamandridae, Caudata) and their driving forces

Xiao-Xiao Shu et al.

Summary: In this study, the researchers used mitochondrial and microsatellite diversities to analyze the response of Liangshantriton taliangensis, an endangered amphibian species, to environmental changes. They found that multiple in situ refugia played crucial roles in the species' persistence and divergence during glacial-interglacial cycles.

ZOOLOGICAL RESEARCH (2022)

Article Evolutionary Biology

Mitogenome phylogeny reveals Indochina Peninsula origin and spatiotemporal diversification of freshwater crabs (Potamidae: Potamiscinae) in China

Da Pan et al.

Summary: The Potamiscinae subfamily is the most species-rich group of primary freshwater crabs in the world, with a large number found in China exhibiting high endemism. The study suggests that Chinese potamiscine crabs likely originated in Indochina during the Eocene, with different clades diversifying in response to geological and climatic changes.

CLADISTICS (2022)

Article Zoology

Altitude impacts body size but not age in the Asia Minor Thin-toed Gecko (Mediodactylus heterocercus)

Abdullah Altunisik et al.

Summary: The elevation affects the body size and lifespan of the Asia Minor Thin-toed Gecko, with higher-altitude populations having longer lifespans.

CANADIAN JOURNAL OF ZOOLOGY (2022)

Article Multidisciplinary Sciences

The enigmatic tropical alpine flora on the African sky islands is young, disturbed, and unsaturated

Martha Kandziora et al.

Summary: The colonization and diversification history of the afroalpine flora in Africa, which is highly endemic but species-poor, has been studied using phylogenetic relationships and molecular dating methods. Most lineages appear to have colonized the afroalpine during the last 5 or 10 million years, and the accumulation of species has increased exponentially toward the present. This study contributes to our understanding of the colonization processes on different tropical sky islands and provides insights into the shaping of their remarkable floras.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)

Article Ecology

Comparing Elevational Patterns of Taxonomic, Phylogenetic, and Functional Diversity of Woody Plants Reveal the Asymmetry of Community Assembly Mechanisms on a Mountain in the Hengduan Mountains Region

Fu Zhao et al.

Summary: The contributions and interaction of biotic and abiotic processes in community assembly are crucial for understanding the elevational patterns of biodiversity. The combined analyses of taxonomic, phylogenetic, and functional diversity are necessary to resolve this issue.

FRONTIERS IN ECOLOGY AND EVOLUTION (2022)

Article Plant Sciences

Phylogeography of Himalrandia lichiangensis from the dry-hot valleys in Southwest China

Yaomei Qiao et al.

Summary: This study investigated the evolutionary history and potential distribution of an endemic shrub in the dry-hot valleys of southwestern China, focusing on the effects of tectonic and climatic processes on plant phylogeography. The results revealed a continuous influence of tectonic and climatic processes on the evolution and distribution of plant species in the region, providing insights into the origin of biodiversity and endemism.

FRONTIERS IN PLANT SCIENCE (2022)

Article Biochemistry & Molecular Biology

Adaptation, ancestral variation and gene flow in a 'Sky Island' Drosophila species

Tom Hill et al.

Summary: The study characterizes how a mycophageous fly species, Drosophila innubila, adapts to its current range in mountain forests in the south-western USA, using population genomic data from over 300 wild-caught individuals. The research reveals evidence of migration, recent expansion, and genetic variation in D. innubila, as well as different adaptation strategies in chorion proteins and immune genes. Additionally, the study shows long-term recurrent positive selection in immune pathways such as the Toll signaling system and antimicrobial peptides.

MOLECULAR ECOLOGY (2021)

Editorial Material Biochemistry & Molecular Biology

Island biogeography

Thomas J. Matthews et al.

CURRENT BIOLOGY (2021)

Article Biology

Differences in Quaternary co-divergence reveals community-wide diversification in the mountains of southwest China varied among species

Tao Wan et al.

Summary: The study used a statistical comparative phylogeography approach to analyze the biodiversity of the mountains of southwest China, revealing the impact of glacial cycles and emphasizing the importance of riverine barriers in the phylogeographic history of vertebrate communities.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2021)

Article Biochemistry & Molecular Biology

Quaternary climatic fluctuations influence the demographic history of two species of sky-island endemic amphibians in the Neotropics

Francisco Fonseca Ribeiro de Oliveira et al.

Summary: The study found that Quaternary climatic fluctuations had a significant impact on the demographic history and population structure of amphibian species endemic to high elevations in Brazil, leading to population expansion during the last glacial maximum and range contraction during interglacial periods. The diversification of these species during the Pleistocene was influenced by geographical isolation and climatic changes, highlighting the importance of landscape heterogeneity in shaping biota evolution.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2021)

Article Ecology

Pleistocene origin and colonization history of Lobelia columnaris Hook. f. (Campanulaceae: Lobelioideae) across sky islands of West Central Africa

Miguel A. Perez-Perez et al.

Summary: This study aimed to infer the ancestral area and historical colonization of Lobelia columnaris in the sky islands of Bioko and Cameroon using dated phylogeny with chloroplast genomes. The results suggest that Bioko may have been the ancestral area and colonization likely occurred during the middle-late Pleistocene, with the populations in South Bioko and northern old sky islands in Cameroon diverging into three clades. Contrary to expectations, the colonization history showed an inverse progression with respect to the age of the Afromontane sky islands.

ECOLOGY AND EVOLUTION (2021)

Article Plant Sciences

Phylogeography of Iris loczyi (Iridaceae) in Qinghai-Tibet Plateau revealed by chloroplast DNA and microsatellite markers

Guoli Zhang et al.

Summary: The study investigated the genetic diversity and population structure of Iris loczyi in the Qinghai-Tibet Plateau, revealing high genetic diversity and significant geographic differentiation.

AOB PLANTS (2021)

Article Ecology

Multiple mountain-hopping colonization of sky-islands on the two sides of Tropical Africa during the Pleistocene: The afroalpine Festuca grasses

Mario Mairal et al.

Summary: The study reveals higher genetic diversity in the westernmost populations of East Africa, which show similarities with West African populations and the Ethiopian Simen Mountains. Multiple long-distance dispersals (LDD) of Festuca abyssinica among eastern African sky-islands were supported, with at least two dispersal events between the two sides of Africa.

JOURNAL OF BIOGEOGRAPHY (2021)

Article Ecology

Evolutionary assembly of flowering plants into sky islands

Hong Qian et al.

Summary: The study found that each of the alpine floras worldwide represents an assemblage of more closely related species compared with their regional floras. Temperate alpine floras are phylogenetically closely related subsets of floras that colonized cold temperate areas during interglacial periods, while the phylogenetic clustering of species in tropical alpine floras exceeds that in temperate mountains.

NATURE ECOLOGY & EVOLUTION (2021)

Article Ecology

Variation in Body Size and Sexual Size Dimorphism of Ground Beetle Pterostichus montanus Motsch. (Coleoptera, Carabidae) in Altitude Gradient

R. A. Sukhodolskaya et al.

Summary: This study sampled beetles at different altitudes and found that altitude and sex significantly affect the beetle body size, with female-biased sexual size dimorphism. Regressions showed positive coefficients, indicating that males were more sensitive to environmental impact.

CONTEMPORARY PROBLEMS OF ECOLOGY (2021)

Article Biochemistry & Molecular Biology

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Article Biochemistry & Molecular Biology

Sky islands as foci for divergence of fig trees and their pollinators in southwest China

Jun-Yin Deng et al.

MOLECULAR ECOLOGY (2020)

Article Biochemistry & Molecular Biology

Phylogenetic implications of mitogenome rearrangements in East Asian potamiscine freshwater crabs (Brachyura: Potamidae)

Zhan Zhang et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2020)

Article Biochemistry & Molecular Biology

The impact of Miocene orogeny for the diversification of Caucasian Epeorus (Caucasiron) mayflies (Ephemeroptera: Heptageniidae)

L'ubos Hrivniak et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2020)

News Item Multidisciplinary Sciences

Mountains and monsoons created Tibetan biodiversity

Erik Stokstad

SCIENCE (2020)

Article Ecology

Climate Vulnerability Assessment of theEspeletiaComplex on Paramo Sky Islands in the Northern Andes

Jhon B. Valencia et al.

FRONTIERS IN ECOLOGY AND EVOLUTION (2020)

Article Biochemistry & Molecular Biology

Strict allopatric speciation of sky island Pyrrhula erythaca species complex

Feng Dong et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2020)

Article Multidisciplinary Sciences

Uplift, climate and biotic changes at the Eocene-Oligocene transition in south-eastern Tibet

Tao Su et al.

NATIONAL SCIENCE REVIEW (2019)

Article Biochemistry & Molecular Biology

Climate change, extinction, and Sky Island biogeography in a montane lizard

John J. Wiens et al.

MOLECULAR ECOLOGY (2019)

Article Biochemistry & Molecular Biology

MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization

Guanliang Meng et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Multidisciplinary Sciences

kuenm: an R package for detailed development of ecological niche models using Maxent

Marlon E. Cobos et al.

Review Multidisciplinary Sciences

Building mountain biodiversity: Geological and evolutionary processes

Carsten Rahbek et al.

SCIENCE (2019)

Article Plant Sciences

Genomic insight into sky island species diversification in a mountainous biodiversity hotspot

Dan Zhang et al.

JOURNAL OF SYSTEMATICS AND EVOLUTION (2019)

Article Multidisciplinary Sciences

Past East Asian monsoon evolution controlled by paleogeography, not CO2

Alex Farnsworth et al.

SCIENCE ADVANCES (2019)

Article Biochemistry & Molecular Biology

Multi-allele species reconstruction using ASTRAL

Maryam Rabiee et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2019)

Review Multidisciplinary Sciences

Is the East Asian flora ancient or not?

Yong-Sheng Chen et al.

NATIONAL SCIENCE REVIEW (2018)

Article Biochemical Research Methods

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

Chao Zhang et al.

BMC BIOINFORMATICS (2018)

Article Biochemistry & Molecular Biology

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2018)

Article Biochemistry & Molecular Biology

Phylogeography and population genomics of a lotic water beetle across a complex tropical landscape

Athena Wai Lam et al.

MOLECULAR ECOLOGY (2018)

Article Multidisciplinary Sciences

Biogeographic regions and events of isolation and diversification of the endemic biota of the tropical Andes

Nicolas A. Hazzi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Evolutionary Biology

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Andrew Rambaut et al.

SYSTEMATIC BIOLOGY (2018)

Review Geosciences, Multidisciplinary

Geological and climatic influences on mountain biodiversity

Alexandre Antonelli et al.

NATURE GEOSCIENCE (2018)

Article Multidisciplinary Sciences

Clade diversification dynamics and the biotic and abiotic controls of speciation and extinction rates

Robin Aguilee et al.

NATURE COMMUNICATIONS (2018)

Article Meteorology & Atmospheric Sciences

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

Stephen E. Fick et al.

INTERNATIONAL JOURNAL OF CLIMATOLOGY (2017)

Article Biochemistry & Molecular Biology

Warm-cold colonization: response of oaks to uplift of the Himalaya-Hengduan Mountains

Hong-Hu Meng et al.

MOLECULAR ECOLOGY (2017)

Article Multidisciplinary Sciences

Uplift-driven diversification in the Hengduan Mountains, a temperate biodiversity hotspot

Yaowu Xing et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Review Multidisciplinary Sciences

Island biogeography: Taking the long view of nature's laboratories

Robert J. Whittaker et al.

SCIENCE (2017)

Article Plant Sciences

Endemism hotspots are linked to stable climatic refugia

Susan Harrison et al.

ANNALS OF BOTANY (2017)

Article Biochemistry & Molecular Biology

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

Erfan Sayyari et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Evolutionary Biology

Past climate change on Sky Islands drives novelty in a core developmental gene network and its phenotype

Marie-Julie Fave et al.

BMC EVOLUTIONARY BIOLOGY (2015)

Article Geochemistry & Geophysics

Cenozoic paleoaltimetry of the SE margin of the Tibetan Plateau: Constraints on the tectonic evolution of the region

Shanying Li et al.

EARTH AND PLANETARY SCIENCE LETTERS (2015)

Article Ecology

Ecological and evolutionary perspectives on community assembly

Gary G. Mittelbach et al.

TRENDS IN ECOLOGY & EVOLUTION (2015)

Review Multidisciplinary Sciences

Sky islands of southwest China. I: an overview of phylogeographic patterns

Kai He et al.

CHINESE SCIENCE BULLETIN (2014)

Article Biochemistry & Molecular Biology

Evolutionary History of True Crabs (Crustacea: Decapoda: Brachyura) and the Origin of Freshwater Crabs

Ling Ming Tsang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

Niche divergence promotes rapid diversification of East African sky island white-eyes (Aves: Zosteropidae)

Siobhan C. Cox et al.

MOLECULAR ECOLOGY (2014)

Article Evolutionary Biology

Phylogeny of the freshwater crabs of the Western Ghats (Brachyura, Gecarcinucidae)

Sebastian Klaus et al.

ZOOLOGICA SCRIPTA (2014)

Review Ecology

Diversity-Dependence, Ecological Speciation, and the Role of Competition in Macroevolution

Daniel L. Rabosky

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 44 (2013)

Article Biochemistry & Molecular Biology

Ultrafast Approximation for Phylogenetic Bootstrap

Bui Quang Minh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

MITOS: Improved de novo metazoan mitochondrial genome annotation

Matthias Bernt et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)

Article Multidisciplinary Sciences

Climate sensitivity, sea level and atmospheric carbon dioxide

James Hansen et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES (2013)

Article Geography, Physical

Effects of longitudinal range-gorge terrain on the eco-geographical pattern in Southwest China

Pan Tao et al.

JOURNAL OF GEOGRAPHICAL SCIENCES (2012)

Article Geography, Physical

Eocene monsoon prevalence over China: A paleobotanical perspective

Cheng Quan et al.

PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY (2012)

Article Evolutionary Biology

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist et al.

SYSTEMATIC BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times

Mario dos Reis et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Environmental Sciences

Mountains of Southern China as Plant Museums and Plant Cradles: Evolutionary and Conservation Insights

Jordi Lopez-Pujol et al.

MOUNTAIN RESEARCH AND DEVELOPMENT (2011)

Article Geography, Physical

Reconstructing Neogene vegetation and climates to infer tectonic uplift in western Yunnan, China

Bai-Nian Sun et al.

PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY (2011)

Article Biodiversity Conservation

ENMTools: a toolbox for comparative studies of environmental niche models

Dan L. Warren et al.

ECOGRAPHY (2010)

Article Multidisciplinary Sciences

Spiny frogs (Paini) illuminate the history of the Himalayan region and Southeast Asia

Jing Che et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biodiversity Conservation

Modeling of species distributions with Maxent:: new extensions and a comprehensive evaluation

Steven J. Phillips et al.

ECOGRAPHY (2008)

Article Multidisciplinary Sciences

An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics

James C. Zachos et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Evolutionary Biology

Inferring speciation times under an episodic molecular clock

Bruce Rannala et al.

SYSTEMATIC BIOLOGY (2007)

Article Geography, Physical

The elevation history of the Tibetan Plateau and its implications for the Asian monsoon

Nigel Harris

PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY (2006)

Article Biochemistry & Molecular Biology

BLAST: improvements for better sequence analysis

Jian Ye et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Uplift of the Tibetan plateau: Evidence from divergence times of glyptosternoid catfishes

ZG Peng et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2006)

Review Geography, Physical

How old is the Asian monsoon system? Palaeobotanical records from China

XJ Sun et al.

PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY (2005)

Review Ecology

Body size in ecological networks

G Woodward et al.

TRENDS IN ECOLOGY & EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

J Castresana

MOLECULAR BIOLOGY AND EVOLUTION (2000)