4.8 Article

Maternally inherited siRNAs initiate piRNA cluster formation

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Large Drosophila germline piRNA clusters are evolutionarily labile and dispensable for transposon regulation

Daniel Gebert et al.

Summary: Through synteny analysis, it was shown that large clusters are evolutionarily labile and mostly species-specific across the Drosophila genus, arising at loci characterized by recurrent chromosomal rearrangements. Chromosomal deletions in D. melanogaster demonstrated that the three largest germline clusters, accounting for the accumulation of >40% of all transposon-targeting piRNAs in ovaries, are not required for fertility nor for transposon regulation in trans. Evidence suggests that dispersed elements may play a central role in transposon defense rather than the regulatory action of large Drosophila germline clusters in trans.

MOLECULAR CELL (2021)

Article Multidisciplinary Sciences

The ENCODE Blacklist: Identification of Problematic Regions of the Genome

Haley M. Amemiya et al.

SCIENTIFIC REPORTS (2019)

Article Biochemistry & Molecular Biology

A Heterochromatin-Specific RNA Export Pathway Facilitates piRNA Production

Mostafa F. ElMaghraby et al.

Article Biochemistry & Molecular Biology

siRNAs and piRNAs collaborate for transposon control in the two-spotted spider mite

Mosharrof Mondal et al.

Article Multidisciplinary Sciences

A heterochromatin-dependent transcription machinery drives piRNA expression

Peter Refsing Andersen et al.

NATURE (2017)

Review Genetics & Heredity

piRNA Biogenesis in Drosophila melanogaster

Xiawei Huang et al.

TRENDS IN GENETICS (2017)

Article Biochemistry & Molecular Biology

Cutoff Suppresses RNA Polymerase II Termination to Ensure Expression of piRNA Precursors

Yung-Chia Ariel Chen et al.

MOLECULAR CELL (2016)

Article Biochemical Research Methods

Augmenting CRISPR applications in Drosophila with tRNA-flanked sgRNAs

Fillip Port et al.

NATURE METHODS (2016)

Article Biochemistry & Molecular Biology

deepTools2: a next generation web server for deep-sequencing data analysis

Fidel Ramirez et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Cell Biology

Silencio/CG9754 connects the Piwi-piRNA complex to the cellular heterochromatin machinery

Grzegorz Sienski et al.

GENES & DEVELOPMENT (2015)

Article Multidisciplinary Sciences

Panoramix enforces piRNA-dependent cotranscriptional silencing

Yang Yu et al.

SCIENCE (2015)

Article Biology

RNA interference-mediated antiviral defense in insects

Don B. Gammon et al.

CURRENT OPINION IN INSECT SCIENCE (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

The HP1 Homolog Rhino Anchors a Nuclear Complex that Suppresses piRNA Precursor Splicing

Zhao Zhang et al.

Article Biochemistry & Molecular Biology

Transcriptional properties and splicing of the flamenco piRNA cluster

Coline Goriaux et al.

EMBO REPORTS (2014)

Article Biochemical Research Methods

BEDOPS: high-performance genomic feature operations

Shane Neph et al.

BIOINFORMATICS (2012)

Article Multidisciplinary Sciences

Structure and function of Zucchini endoribonuclease in piRNA biogenesis

Hiroshi Nishimasu et al.

NATURE (2012)

Article Multidisciplinary Sciences

Paramutation in Drosophila linked to emergence of a piRNA-producing locus

Augustin de Vanssay et al.

NATURE (2012)

Article Multidisciplinary Sciences

The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis

Jonathan J. Ipsaro et al.

NATURE (2012)

Article Biochemistry & Molecular Biology

Production of artificial piRNAs in flies and mice

Felix Muerdter et al.

Article Biochemistry & Molecular Biology

Adaptation to P Element Transposon Invasion in Drosophila melanogaster

Jaspreet S. Khurana et al.

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Multidisciplinary Sciences

Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells

Yoshinori Kawamura et al.

NATURE (2008)

Article Multidisciplinary Sciences

An endogenous small interfering RNA pathway in Drosophila

Benjamin Czech et al.

NATURE (2008)

Article Multidisciplinary Sciences

Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells

Megha Ghildiyal et al.

SCIENCE (2008)

Article Biochemistry & Molecular Biology

Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

Julius Brennecke et al.

Article Multidisciplinary Sciences

A slicer-mediated mechanism for repeat-associated siRNA 5′ end formation in Drosophila

Lalith S. Gunawardane et al.

SCIENCE (2007)

Article Multidisciplinary Sciences

A distinct small RNA pathway silences selfish genetic elements in the germline

Vasily V. Vagin et al.

SCIENCE (2006)

Article Multidisciplinary Sciences

A novel class of small RNAs bind to MILI protein in mouse testes

Alexei Aravin et al.

NATURE (2006)

Article Biochemistry & Molecular Biology

Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation

TA Rand et al.

Article Multidisciplinary Sciences

Short interfering RNA confers intracellular antiviral immunity in human cells

L Gitlin et al.

NATURE (2002)

Review Multidisciplinary Sciences

RNA silencing in plants - Defense and counterdefense

V Vance et al.

SCIENCE (2001)

Article Multidisciplinary Sciences

Role for a bidentate ribonuclease in the initiation step of RNA interference

E Bernstein et al.

NATURE (2001)