4.5 Article

Maternal ancestry of first Parsi settlers of India using ancient mitogenome

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biology

Twelve years of SAMtools and BCFtools

Petr Danecek et al.

Summary: SAMtools and BCFtools are widely used tools for processing high-throughput sequencing data, with a history of 12 years of continuous development and improvement. These packages have been utilized in various software projects and genomic pipelines and are freely available on GitHub.

GIGASCIENCE (2021)

Article Biochemistry & Molecular Biology

MEGA11 Molecular Evolutionary Genetics Analysis Version 11

Koichiro Tamura et al.

Summary: MEGA software, a mature tool for computational molecular evolution, has been enhanced with new additions for building timetrees of species, pathogens, and gene families using rapid relaxed-clock methods. These additions include methods for estimating divergence times, confidence intervals, and new options for tagging sequences with spatiotemporal sampling information. The enhancements aim to improve user experience, result quality, and the pace of biological discovery.

MOLECULAR BIOLOGY AND EVOLUTION (2021)

Article Biochemical Research Methods

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

Remco Bouckaert et al.

PLOS COMPUTATIONAL BIOLOGY (2019)

Article Multidisciplinary Sciences

The formation of human populations in South and Central Asia

Vagheesh M. Narasimhan et al.

SCIENCE (2019)

Article Multidisciplinary Sciences

Ancient DNA from the skeletons of Roopkund Lake reveals Mediterranean migrants in India

Eadaoin Harney et al.

NATURE COMMUNICATIONS (2019)

Article Evolutionary Biology

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Andrew Rambaut et al.

SYSTEMATIC BIOLOGY (2018)

Article Evolutionary Biology

A genetic chronology for the Indian Subcontinent points to heavily sex-biased dispersals

Marina Silva et al.

BMC EVOLUTIONARY BIOLOGY (2017)

Article Biochemistry & Molecular Biology

HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing

Hansi Weissensteiner et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemical Research Methods

Reducing microbial and human contamination in DNA extractions from ancient bones and teeth

Petra Korlevic et al.

BIOTECHNIQUES (2015)

Article Multidisciplinary Sciences

A global reference for human genetic variation

David M. Altshuler et al.

NATURE (2015)

Article Ecology

POPART: full-feature software for haplotype network construction

Jessica W. Leigh et al.

METHODS IN ECOLOGY AND EVOLUTION (2015)

Article Biotechnology & Applied Microbiology

Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA

Gabriel Renaud et al.

GENOME BIOLOGY (2015)

Article Genetics & Heredity

Genetic Evidence for Recent Population Mixture in India

Priya Moorjani et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2013)

Article Biochemical Research Methods

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

Hakon Jonsson et al.

BIOINFORMATICS (2013)

Article Multidisciplinary Sciences

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

Jesse Dabney et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Genetics & Heredity

A Copernican Reassessment of the Human Mitochondrial DNA Tree from its Root

Doron M. Behar et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2012)

Article Biochemistry & Molecular Biology

Population Genetic Structure in Indian Austroasiatic Speakers: The Role of Landscape Barriers and Sex-Specific Admixture

Gyaneshwer Chaubey et al.

MOLECULAR BIOLOGY AND EVOLUTION (2011)

Article Anthropology

Population Affinities of Parsis in the Indian Subcontinent

Manjari Jonnalagadda et al.

INTERNATIONAL JOURNAL OF OSTEOARCHAEOLOGY (2011)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

Reconstructing Indian population history

David Reich et al.

NATURE (2009)

Article Multidisciplinary Sciences

Worldwide human relationships inferred from genome-wide patterns of variation

Jun Z. Li et al.

SCIENCE (2008)

Article Genetics & Heredity

Y-chromosomal DNA variation in Pakistan

R Qamar et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2002)