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Adriaan van der Graaf et al.
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Manu J. Dubin et al.
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Sandra Cortijo et al.
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Xia Shen et al.
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Methylation plotter: a web tool for dynamic visualization of DNAmethylation data
Izaskun Mallona et al.
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Filippos D. Klironomos et al.
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Weilong Guo et al.
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Carlos M. Herrera et al.
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Jae Hoon Sul et al.
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Steven J. Franks et al.
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Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data
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Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing
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Variance component model to account for sample structure in genome-wide association studies
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Eva Jablonka et al.
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So-Yon Park et al.
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GMAP: a genomic mapping and alignment program for mRNA and EST sequences
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JD Storey et al.
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