相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Recombination Rate Variation Modulates Gene Sequence Evolution Mainly via GC-Biased Gene Conversion, Not Hill-Robertson Interference, in an Avian System
Paulina Bolivar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences
Krystyna Nadachowska-Brzyska et al.
CURRENT BIOLOGY (2015)
Why Selection Might Be Stronger When Populations Are Small: Intron Size and Density Predict within and between-Species Usage of Exonic Splice Associated cis-Motifs
XianMing Wu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Biased Gene Conversion and GC-Content Evolution in the Coding Sequences of Reptiles and Vertebrates
Emeric Figuet et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Highly Variable Recombinational Landscape Modulates Efficacy of Natural Selection in Birds
Toni I. Gossmann et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Mitochondrial DNA as a tool for reconstructing past life-history traits in mammals
E. Figuet et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2014)
OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals
Emmanuel J. P. Douzery et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
Takeshi Kawakami et al.
MOLECULAR ECOLOGY (2014)
Comparative population genomics in animals uncovers the determinants of genetic diversity
J. Romiguier et al.
NATURE (2014)
Whole-genome analyses resolve early branches in the tree of life of modern birds
Erich D. Jarvis et al.
SCIENCE (2014)
Comparative genomics reveals insights into avian genome evolution and adaptation
Guojie Zhang et al.
SCIENCE (2014)
Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis
Peng Cui et al.
GENOME BIOLOGY (2014)
CGtag: complete genomics toolkit and annotation in a cloud-based Galaxy
Saskia Hiltemann et al.
GIGASCIENCE (2014)
New approaches for unravelling reassortment pathways
Victoria Svinti et al.
BMC EVOLUTIONARY BIOLOGY (2013)
Population Size Dependence of Fitness Effect Distribution and Substitution Rate Probed by Biophysical Model of Protein Thermostability
Richard A. Goldstein
GENOME BIOLOGY AND EVOLUTION (2013)
Reconstructing the Phylogenetic History of Long-Term Effective Population Size and Life-History Traits Using Patterns of Amino Acid Replacement in Mitochondrial Genomes of Mammals and Birds
Benoit Nabholz et al.
GENOME BIOLOGY AND EVOLUTION (2013)
The determinants of the molecular substitution process in turtles
J. M. Lourenco et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2013)
Interaction between Selection and Biased Gene Conversion in Mammalian Protein-Coding Sequence Evolution Revealed by a Phylogenetic Covariance Analysis
Nicolas Lartillot
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Genomic Evidence for Large, Long-Lived Ancestors to Placental Mammals
J. Romiguier et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species
John J. Wiens et al.
BIOLOGY LETTERS (2012)
JOINT RECONSTRUCTION OF DIVERGENCE TIMES AND LIFE-HISTORY EVOLUTION IN PLACENTAL MAMMALS USING A PHYLOGENETIC COVARIANCE MODEL
Nicolas Lartillot et al.
EVOLUTION (2012)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Weak Selection and Protein Evolution
Hiroshi Akashi et al.
GENETICS (2012)
The Population Genomics of a Fast Evolver: High Levels of Diversity, Functional Constraint, and Molecular Adaptation in the Tunicate Ciona intestinalis
Georgia Tsagkogeorga et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Comparative RNA sequencing reveals substantial genetic variation in endangered primates
George H. Perry et al.
GENOME RESEARCH (2012)
Efficient Selection of Branch-Specific Models of Sequence Evolution
Julien Y. Dutheil et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Estimating divergence dates and evaluating dating methods using phylogenomic and mitochondrial data in squamate reptiles
Daniel G. Mulcahy et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)
Fast and Robust Characterization of Time-Heterogeneous Sequence Evolutionary Processes Using Substitution Mapping
Jonathan Romiguier et al.
PLOS ONE (2012)
A Phylogenetic Model for Investigating Correlated Evolution of Substitution Rates and Continuous Phenotypic Characters
Nicolas Lartillot et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Dynamic Evolution of Base Composition: Causes and Consequences in Avian Phylogenomics
Benoit Nabholz et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Crocodilian phylogeny inferred from twelve mitochondrial protein-coding genes, with new complete mitochondrial genomic sequences for Crocodylus acutus and Crocodylus novaeguineae
Zhang Man et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2011)
Inference of human population history from individual whole-genome sequences
Heng Li et al.
NATURE (2011)
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
Vincent Ranwez et al.
PLOS ONE (2011)
Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification
Robert W. Meredith et al.
SCIENCE (2011)
Bats and birds: Exceptional longevity despite high metabolic rates
Jason Munshi-South et al.
AGEING RESEARCH REVIEWS (2010)
Contrasting GC-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes
Jonathan Romiguier et al.
GENOME RESEARCH (2010)
The recombination landscape of the zebra finch Taeniopygia guttata genome
Niclas Backstrom et al.
GENOME RESEARCH (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Distributions of Selectively Constrained Sites and Deleterious Mutation Rates in the Hominid and Murid Genomes
Lel Eory et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Detecting positive selection within genomes: the problem of biased gene conversion
Abhirami Ratnakumar et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2010)
Mutation rate is linked to diversification in birds
Robert Lanfear et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes
Laurent Duret et al.
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
A database of vertebrate longevity records and their relation to other life-history traits
J. P. de Magalhaes et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2009)
GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates
Nicolas Galtier et al.
TRENDS IN GENETICS (2009)
Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs
Julien Dutheil et al.
BMC EVOLUTIONARY BIOLOGY (2008)
Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
Sergey I. Nikolaev et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals
Konstantin Popadin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
The distribution of fitness effects of new mutations
Adam Eyre-Walker et al.
NATURE REVIEWS GENETICS (2007)
Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution
Nicolas Galtier et al.
TRENDS IN GENETICS (2007)
Relationships between body size and abundance in ecology
Ethan P. White et al.
TRENDS IN ECOLOGY & EVOLUTION (2007)
Strong regional biases in nucleotide substitution in the chicken genome
Matthew T. Webster et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Male-driven biased gene conversion governs the evolution of base composition in human Alu repeats
MT Webster et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Detecting site-specific physicochemical selective pressures: Applications to the class IHLA of the human major histocompatibility complex and the SRK of the plant sporophytic self-incompatibility system
R Sainudiin et al.
JOURNAL OF MOLECULAR EVOLUTION (2005)
Evidence for widespread degradation of gene control regions in hominid genomes
PD Keightley et al.
PLOS BIOLOGY (2005)
Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance genes
D Leister
TRENDS IN GENETICS (2004)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
Are radical and conservative substitution rates useful statistics in molecular evolution?
NGC Smith
JOURNAL OF MOLECULAR EVOLUTION (2003)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Recombination explains isochores in mammalian genomes
JI Montoya-Burgos et al.
TRENDS IN GENETICS (2003)
Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes
JZ Zhang
JOURNAL OF MOLECULAR EVOLUTION (2000)