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Matthew The et al.
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Scavager: A Versatile Postsearch Validation Algorithm for Shotgun Proteomics Based on Gradient Boosting
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IdentiPy: An Extensible Search Engine for Protein Identification in Shotgun Proteomics
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Andy T. Kong et al.
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Sangtae Kim et al.
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Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
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