☆ 4.5 Editorial Material

Virtual issue: phylogeographic studies in the Japanese Archipelago: from geographic patterns of genetic variation to biodiversity in plants

JOURNAL OF PLANT RESEARCH (2023)

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Article Plant Sciences

Phylogeography of the temperate grassland plant Tephroseris kirilowii (Asteraceae) inferred from multiplexed inter-simple sequence repeat genotyping by sequencing (MIG-seq) data

Tomoka Sakaba et al.

Summary: A group of temperate grassland plant species, known as the Mansen elements, are found in Japan and continental East Asia. Researchers hypothesized that these species are remnants of continental grasslands in Japan from a colder age, but their migration history remained unclear. To investigate the migration history, the phylogeographic analysis of Tephroseris kirilowii, a member of the group, was conducted using single-nucleotide polymorphisms (SNPs). The results showed that the Japanese populations of T. kirilowii diverged from continental East Asia around 25.2 thousand years ago, with the first divergence within Japan occurring around 20.2 thousand years ago. The study suggested a post-glacial expansion of T. kirilowii in Japan based on limited suitable climate during the last glacial maximum and slight genetic differentiation among Japanese populations.

JOURNAL OF PLANT RESEARCH (2023)

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Article Plant Sciences

Decades-long phylogeographic issues: complex historical processes and ecological factors on genetic structure of alpine plants in the Japanese Archipelago

Hajime Ikeda

Summary: Mountain regions play an important role in supporting biodiversity, especially in East Asia. The high mountains of the Japanese archipelago harbor alpine and arctic-alpine plant populations, which have persisted through climate changes in the Pleistocene. Phylogeographic studies reveal complex range dynamics of these plants and their genetic relationships with northern regions, indicating possible ecological divergence.

JOURNAL OF PLANT RESEARCH (2022)

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Article Plant Sciences

Genetic structure of a widespread alpine shrub Rhododendron aureum (Ericaceae) across East Asia

Maria A. Polezhaeva et al.

Summary: The vast territory of East Asia, including southwestern Beringia, is considered to have been almost ice free during the Pleistocene. The genetic variation and population structure of the alpine shrub Rhododendron aureum across East Asia revealed three main genetic groups: Siberia, Northeast, and North Pacific, suggesting different patterns of divergence and historical relationships.

JOURNAL OF PLANT RESEARCH (2021)

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Article Plant Sciences

Phylogeography of the East Asian grassland plant, Viola orientalis (Violaceae), inferred from plastid and nuclear restriction site-associated DNA sequencing data

Haruna Sata et al.

Summary: The study revealed that Viola orientalis originated in northeastern Asia and spread southward through the Korean Peninsula to the Japanese Islands during the last glacial period. This finding supports the previously proposed evolutionary hypothesis regarding the origin and migration routes of the Mansen elements.

JOURNAL OF PLANT RESEARCH (2021)

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Article Plant Sciences

Phylogenetic origin of two Japanese Torreya taxa found in two regions with strongly contrasting snow depth

Mineaki Aizawa et al.

Summary: The Japanese archipelago shows a significant difference in snow depth in winter, leading to varied distribution and morphology of plant subspecies, similar to altitudinal differences. This study aimed to reveal the phylogenetic origin of two varieties of Torreya nucifera and found that these two subspecies have different origins, possibly involving hybridization and gene flow.

JOURNAL OF PLANT RESEARCH (2021)

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Article Plant Sciences

Origin of the critically endangered endemic speciesScrophularia takesimensis(Scrophulariaceae) on Ulleung Island, Korea: implications for conservation

Hee-Young Gil et al.

JOURNAL OF PLANT RESEARCH (2020)

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Article Plant Sciences

Population genetic structure and demography of Magnolia kobus: variety borealis is not supported genetically

Ichiro Tamaki et al.

JOURNAL OF PLANT RESEARCH (2019)

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Article Plant Sciences

The origin of wild populations of Toxicodendron succedaneum on mainland Japan revealed by genetic variation in chloroplast and nuclear DNA

Yuichiro Hiraoka et al.

JOURNAL OF PLANT RESEARCH (2018)

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Article Plant Sciences

Genetic structure of Hepatica nobilis var. japonica, focusing on within population flower color polymorphism

Shinichiro Kameoka et al.

JOURNAL OF PLANT RESEARCH (2017)

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Article Plant Sciences

Chloroplast DNA sequencing and detailed microsatellite genotyping of all remnant populations suggests that only a single genet survives of the critically endangered plant Rehmannia japonica

Shingo Kaneko et al.

JOURNAL OF PLANT RESEARCH (2017)

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Article Plant Sciences

Phylogeography of East Asian Lespedeza buergeri (Fabaceae) based on chloroplast and nuclear ribosomal DNA sequence variations

Dong-Pil Jin et al.

JOURNAL OF PLANT RESEARCH (2016)

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Article Plant Sciences

Multiple and mass introductions from limited origins: genetic diversity and structure of Solidago altissima in the native and invaded range

Yuzu Sakata et al.

JOURNAL OF PLANT RESEARCH (2015)

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Article Plant Sciences

Persistent history of the bird-dispersed arctic-alpine plant Vaccinium vitis-idaea L. (Ericaceae) in Japan

Hajime Ikeda et al.

JOURNAL OF PLANT RESEARCH (2015)

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Article Plant Sciences

Environmental factors contribute to the formation and maintenance of the contact zone observed in deciduous broad-leaved tree species in Japan

Akitaka Tono et al.

JOURNAL OF PLANT RESEARCH (2015)

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Article Plant Sciences

Genetic structure of Sakhalin spruce (Picea glehnii) in northern Japan and adjacent regions revealed by nuclear microsatellites and mitochondrial gene sequences

Mineaki Aizawa et al.

JOURNAL OF PLANT RESEARCH (2015)

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Article Plant Sciences

Phylogeography and genetic diversity of East Asian Neolitsea sericea (Lauraceae) based on variations in chloroplast DNA sequences

Jung-Hyun Lee et al.

JOURNAL OF PLANT RESEARCH (2013)

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Article Plant Sciences

Anagenetic speciation in Ullung Island, Korea: genetic diversity and structure in the island endemic species, Acer takesimense (Sapindaceae)

Koji Takayama et al.

JOURNAL OF PLANT RESEARCH (2013)

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Article Plant Sciences

Population fragmentation causes randomly fixed genotypes in populations of Arabidopsis kamchatica in the Japanese Archipelago

Hiroyuki Higashi et al.

JOURNAL OF PLANT RESEARCH (2012)

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Article Plant Sciences

Comparative phylogeography of four component species of deciduous broad-leaved forests in Japan based on chloroplast DNA variation

Takaya Iwasaki et al.

JOURNAL OF PLANT RESEARCH (2012)

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Article Plant Sciences

Phylogeography of the Korean pine (Pinus koraiensis) in northeast Asia: inferences from organelle gene sequences

Mineaki Aizawa et al.

JOURNAL OF PLANT RESEARCH (2012)

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Article Plant Sciences

Phylogeography of Japanese horse chestnut (Aesculus turbinata) in the Japanese Archipelago based on chloroplast DNA haplotypes

Kanako Sugahara et al.

JOURNAL OF PLANT RESEARCH (2011)

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Article Plant Sciences

The genetic structure of Quercus crispula in northeastern Japan as revealed by nuclear simple sequence repeat loci

Takafumi Ohsawa et al.

JOURNAL OF PLANT RESEARCH (2011)

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Article Plant Sciences

Chloroplast DNA phylogeography of Betula maximowicziana, a long-lived pioneer tree species and noble hardwood in Japan

Yoshiaki Tsuda et al.

JOURNAL OF PLANT RESEARCH (2010)

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Article Plant Sciences

The homogenous genetic structure and inferred unique history of range shifts during the Pleistocene climatic oscillations of Arcterica nana (Maxim.) Makino (Ericaceae)

Hajime Ikeda et al.

JOURNAL OF PLANT RESEARCH (2009)

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Article Plant Sciences

Comparative phylogeography of two closely related Viola species occurring in contrasting habitats in the Japanese archipelago

Hironori Toyama et al.

JOURNAL OF PLANT RESEARCH (2009)

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Article Plant Sciences

The evolution of self-compatible and self-incompatible populations in a hermaphroditic perennial, Trillium camschatcense (Melanthiaceae)

Shosei Kubota et al.

JOURNAL OF PLANT RESEARCH (2009)

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Article Plant Sciences

Genetic structure of Cerasus jamasakura, a Japanese flowering cherry, revealed by nuclear SSRs: implications for conservation

Yoshiaki Tsuda et al.

JOURNAL OF PLANT RESEARCH (2009)

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Article Plant Sciences

Genetic divergence in nuclear genomes between populations of Fagus crenata along the Japan Sea and Pacific sides of Japan

Koichi Hiraoka et al.

JOURNAL OF PLANT RESEARCH (2009)

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Article Plant Sciences

Chloroplast DNA phylogeography of Pedicularis ser. Gloriosae (Orobanchaceae) in Japan

Noriyuki Fujii

JOURNAL OF PLANT RESEARCH (2007)

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Article Plant Sciences

Phylogeography of the genus Cardiandra based on genetic variation in cpDNA sequences

Hiroaki Setoguchi et al.

JOURNAL OF PLANT RESEARCH (2006)

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Article Plant Sciences

Phylogeography of Arcterica nana (Ericaceae) suggests another range expansion history of Japanese alpine plants

Hajime Ikeda et al.

JOURNAL OF PLANT RESEARCH (2006)

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Article Biochemistry & Molecular Biology

Molecular evidence for glacial refugia of mountain plants in the European Alps

P Schönswetter et al.

MOLECULAR ECOLOGY (2005)

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Article Plant Sciences

Phylogeography of the component species of broad-leaved evergreen forests in Japan, based on chloroplast DNA variation

K Aoki et al.

JOURNAL OF PLANT RESEARCH (2004)

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Article Multidisciplinary Sciences

Glacial refugia:: Hotspots but not melting pots of genetic diversity

RJ Petit et al.

SCIENCE (2003)

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Article Plant Sciences

Intraspecific sequence variation of chloroplast DNA reflecting variety and geographical distribution of Polygonum cuspidatum (Polygonaceae) in Japan

A Inamura et al.

JOURNAL OF PLANT RESEARCH (2000)

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Review Multidisciplinary Sciences

The genetic legacy of the Quaternary ice ages

G Hewitt

NATURE (2000)

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