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Article
Virology
Huang Huang et al.
Summary: In this study, we identified 17 fungal single-stranded RNA viruses in the phytopathogenic fungus Fusarium asiaticum, including a trisegmented virus named Fusarium asiaticum mycobunyavirus 1. The FaMBV1 genome comprises three RNA segments encoding different proteins and can be vertically transmitted by asexual spores. However, FaMBV1 has little effect on hyphal growth, pathogenicity, and conidium production.
JOURNAL OF VIROLOGY
(2023)
Article
Virology
Francisco Murilo Zerbini et al.
Summary: This article reports on changes to virus taxonomy and nomenclature approved by the International Committee on Taxonomy of Viruses (ICTV) in April 2023. All ICTV members were invited to vote on 174 taxonomic proposals and a revision of the ICTV Statutes that had been approved by the ICTV Executive Committee in July 2022. Majority approval was obtained for all proposals and the revised ICTV Statutes. A significant change was the renaming of existing species according to the binomial format and the classification of gene transfer agents (GTAs) as viriforms. In total, one class, seven orders, 31 families, 214 genera, and 858 species were created.
ARCHIVES OF VIROLOGY
(2023)
Article
Virology
Francisco Murilo Zerbini et al.
Summary: Following the ICTV Ratification Vote in March 2021, a standard two-part binomial nomenclature is now the standard for naming virus species. The adoption of this new nomenclature is still in its early stages, making it timely to clarify the distinction between viruses and virus species and provide guidelines for their correct naming and writing.
ARCHIVES OF VIROLOGY
(2022)
Article
Virology
Mesele Tilahun Belete et al.
Summary: The complete genomic sequence of a new plant rhabdovirus, named CnV1, found in Cnidium officinale in South Korea, is reported. The virus has a negative-sense RNA genome and its organization is similar to unsegmented plant rhabdoviruses. Based on sequence similarity, genome organization, and phylogenetic analysis, CnV1 is classified as a new member of the genus Betanucleorhabdovirus in the family Rhabdoviridae. This is the first rhabdovirus found in C. officinale.
ARCHIVES OF VIROLOGY
(2022)
Article
Plant Sciences
Venkidusamy Kavi Sidharthan et al.
Summary: This study identified seven putative novel RNA viruses in Spruce dwarf mistletoe parasitizing Picea crassifolia, providing insights into the impact of these viruses on the host plant.
JOURNAL OF GENERAL PLANT PATHOLOGY
(2022)
Article
Plant Sciences
Yoshifumi Shimomoto et al.
Summary: This study identified a new virus, named the Japanese star anise ringspot-associated virus (JSARaV), as the causal agent of the ringspot disease in Japanese star anise. It was found that eriophyid mites of the family Diptilomiopidae can transmit this emaravirus, which is a novel finding.
JOURNAL OF GENERAL PLANT PATHOLOGY
(2022)
Article
Virology
Arthur W. D. Edridge et al.
Summary: A new virus, Mundri virus (MUNV), was discovered in the blood of a patient with Nodding syndrome. However, further investigations suggest that while MUNV is common in children in South Sudan, it may not be directly associated with Nodding syndrome.
Article
Virology
Nannan Li et al.
Summary: This study used RNA sequencing to investigate the viral diversity of 50 species of wild pollinating insects and identified 3 pathogenic honeybee viruses, 8 previously reported viruses, and 26 novel viruses. Some of the novel viruses were closely related to honeybee pathogenic viruses, and 4 were determined to have potential pathogenicity for their hosts. The detected viruses mainly belonged to different virus orders and families.
Article
Microbiology
Wentao Zhu et al.
Summary: In this study, metatranscriptomic sequencing was used to identify RNA viruses in fecal samples from birds and small mammals in the Qinghai-Tibet Plateau. A total of 184 RNA viruses were identified, with the majority being newly discovered viruses. Some of these viruses could be zoonotic, and new hosts and distribution of previously unknown viruses were also discovered. In addition, potential new taxa of invertebrate RNA viruses were identified.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Virology
Zhuang-Xin Ye et al.
Summary: NbuSBV-1 is a novel arlivirus identified in a yellow spotted stink bug, belonging to the family Pentatomidae, with a single negative-stranded RNA genome of 13,605 nucleotides in length and containing six open reading frames. This virus shares amino acid sequence identity with Lishi spider virus 2 and is clustered with other arliviruses in phylogenetic analysis. NbuSBV-1-derived siRNAs exhibit typical patterns of host antiviral RNA interference pathway.
ARCHIVES OF VIROLOGY
(2022)
Article
Infectious Diseases
Qingqing Wu et al.
Summary: Two novel porcine ephemeroviruses have been identified, expanding the known host range of ephemeroviruses.
INFECTION GENETICS AND EVOLUTION
(2022)
Article
Plant Sciences
Luca Nerva et al.
Summary: This study investigates the influence of host health on the taxa profile and behavior of microbial communities associated with the wood of 20-year-old grapevine plants through metatranscriptomics. The results show that this approach can better define the microbial community and the use of total RNA enables the identification of bacteria with potential biocontrol activities against wood-degrading fungi. Additionally, a large number of new viral species associated with a single environment and with potential impact on the entire holobiont were discovered.
JOURNAL OF EXPERIMENTAL BOTANY
(2022)
Article
Microbiology
Thomas B. Waltzek et al.
Summary: A new virus affecting aquatic turtles in Florida has been discovered, causing neurological symptoms, oral and genital ulcers, and bacterial infections. The virus was isolated and its genome was sequenced, revealing similarities to arenaviruses. Phylogenetic analysis shows that its RNA polymerase gene is highly divergent from known negative-sense RNA viruses, while the glycoprotein precursor gene is closely related to hantaviruses in fish. This turtle virus may represent a new taxon of negative-sense RNA viruses, possibly at the family, order, or class level. This study is important for understanding the evolution and classification of aquatic turtle viruses.
Article
Microbiology
Jing Wang et al.
Summary: We identified and characterized a mycovirus named Fusarium oxysporum mymonavirus 1 (FoMyV1) from the phytopathogenic fungus Fusarium oxysporum. The genome of FoMyV1 has a length of 10,114 nucleotides and contains five non-overlapping open reading frames (ORFs). The largest ORF encodes a polypeptide with high amino acid identity to other mymonaviruses and also shares similarity with proteins of mynonaviruses that infect other phytopathogenic fungi. Phylogenetic analysis revealed that FoMyV1 belongs to the genus Hubramonavirus in the family Mymonaviridae. FoMyV1 can be transmitted through hyphal anastomosis and affects the growth and conidium production of its fungal host.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Microbiology
Yan-Mei Chen et al.
Summary: Environmental RNA viruses are diverse, ubiquitous, and have significant ecological and biogeochemical impacts. Metatranscriptomic sequencing of soil, sediment, and animal faecal samples in China revealed a previously unknown diversity of 6,624 putatively novel virus operational taxonomic units. Factors such as organic content and eukaryote species abundance influenced virome compositions, with a greater impact on plants, fungi, and bacteria viruses compared to animal viromes.
NATURE MICROBIOLOGY
(2022)
Article
Microbiology
Alejandro Alfaro-Alarcon et al.
Summary: This study reports the presence of boid inclusion body disease (BIBD) and reptarenavirus infection in indigenous captive and wild constrictor snakes in Costa Rica. The research reveals that both the viruses and the disease have been present in free-ranging/wild snakes in Costa Rica since at least the 1980s. The diagnosis of BIBD in wild boa constrictors suggests that this species plays a role in the circulation of reptarenaviruses.
MICROBIOLOGY SPECTRUM
(2022)
Article
Virology
Jens H. Kuhn et al.
Summary: This article presents the updated taxonomy of Negarnaviricota, including the addition of new families, genera, and species, renaming and moving of species, and correction of misspelled names as accepted by the International Committee on Taxonomy of Viruses (ICTV).
ARCHIVES OF VIROLOGY
(2022)
Article
Virology
Dongjin Choi et al.
Summary: A novel plant-infecting rhabdovirus, Artemisia capillaris nucleorhabdovirus 1 (AcNRV1), was identified in the transcriptome data of Artemisia capillaris root tissue. AcNRV1 is a member of the genus Alphanucleorhabdovirus and is closely related to wheat yellow striate virus and rice yellow stunt virus. Conserved regulatory sequences involved in transcription termination/polyadenylation and transcription initiation were identified in the AcNRV1 genome.
Article
Virology
Cesar Augusto Diniz Xavier et al.
Summary: This study identified and characterized five putative new viruses associated with Solenopsis invicta in introduced areas, including novel negative-sense single-stranded RNA viruses. The findings suggest a long-term association of these viruses with the invasive ant species and potential active replication within their bodies.
Article
Microbiology
Zhiqiang Wu et al.
Summary: This study provides a comprehensive description of the core viromes of rodents and insectivores from Mainland Southeast Asia, highlighting a high diversity of viruses in rodent species in this region. Through meta-transcriptomic analysis, novel viruses from different evolutionary lineages were identified, as well as a characterization of viruses related to known pathogens.
Article
Infectious Diseases
Alexandru Tomazatos et al.
Summary: This study identified a novel orthonairovirus, Sulina virus, in ticks collected from mammal and bird hosts in the Danube Delta, which belongs to a new genogroup closely related to Tamdy orthonairovirus. The findings suggest that Sulina virus is associated with the virome of Ixodes ricinus ticks, expanding our understanding of virus-tick interactions and the potential emergence of orthonairoviruses as pathogens.
INFECTION GENETICS AND EVOLUTION
(2021)
Article
Microbiology
Marylee L. Kapuscinski et al.
Summary: This study sequenced the genomes of 99 bunyaviruses, providing insights into genome reassortment and co-infection. The research contributes to enhancing understanding of bunyavirus evolution and pathogenic potential.
Article
Virology
Alexander G. Litov et al.
Summary: Members of the Lipopteninae subfamily, particularly the sheep ked (Melophagus ovinus), are ectoparasites of mammals which can cause skin irritation, restlessness, anemia, weight loss, and skin injuries. A recent study in the Republic of Tuva, Russia, revealed the presence of five novel viruses related to various families, suggesting their potential as arboviruses infecting mammals.
Article
Forestry
Thomas R. Gaskin et al.
Summary: A novel virus affecting European ash and manna ash trees was identified, named ash shoestring-associated emaravirus (ASaV). The virus causes symptoms such as leaf deformation and shoestring-like symptoms, showing a wide geographical distribution in affected ash species across Switzerland, Germany, Italy, and Sweden. This is the first confirmation of an emaravirus affecting ash tree species with shoestring symptoms of leaves in Europe.
Article
Virology
Liguang Tang et al.
Summary: This study reported the full-length genome sequence of a novel cogu-like virus identified in Brassica campestris in China. The virus, named Brassica campestris chinensis coguvirus 1 (BCCoV1), possesses a bipartite genome composed of two RNA molecules. The RdRp, MP, and NP of this virus are closely related to other negative-stranded RNA viruses, belonging to the new genus Coguvirus. Phylogenetic analysis confirmed the classification of BCCoV1 possibly belonging to the genus Coguvirus, family Phenuiviridae, order Bunyavirales.
ARCHIVES OF VIROLOGY
(2021)
Article
Virology
Zeli Chen et al.
Summary: YPNSV, a novel negative-stranded RNA virus with a bipartite genome, was isolated from Paris polyphylla var. yunnanensis plants in Yunnan. Sequence comparisons showed that YPNSV is most similar to watermelon crinkle leaf-associated virus 2 (WCLaV-2). Phylogenetic analysis placed YPNSV in a clade with coguviruses within the family Phenuiviridae.
ARCHIVES OF VIROLOGY
(2021)
Correction
Virology
Lin Xu et al.
Correction
Biochemistry & Molecular Biology
Jun Ma et al.
Summary: Correction to the paper has been published.
Article
Virology
Tomoyuki Nabeshima et al.
Summary: Vitis coignetiae samples from northern Japan were found to be infected with multiple RNA viruses, with three newly identified virus species assigned to different genera based on sequence identity and phylogenetic analysis.
Article
Virology
Ziqian Xu et al.
Summary: A newly recognized phlebovirus, Hedi virus (HEDV), was isolated from Phlebotomus chinensis sandflies in Shanxi Province, China. The virus shows low amino acid sequence similarity to other phleboviruses, with the RdRp sequence having the highest similarity to Rift Valley fever virus. It is important to increase monitoring of sandfly-borne phleboviruses in China.
Article
Virology
Maria M. Ramirez-Martinez et al.
Summary: The study found multiple viruses in streblid bat flies collected from bats in Mexico and Uganda, revealing previously unrecognized virus transmission cycles involving bats and bat flies. The viruses identified in the study are related to emerging zoonotic viruses and suggest potential zoonotic transmission pathways involving bats and their ectoparasites.
Article
Multidisciplinary Sciences
Riikka Linnakoski et al.
Summary: Species of Armillaria are globally distributed and some form large long-living clones capable of long-range spore-mediated transfer and vegetative spread. This study identified negative-sense RNA viruses, positive-sense RNA viruses, and new members of virus families infecting Armillaria isolates. Thermal treatment can cure Armillaria isolates of viruses, allowing further research on virus effects using infected and virus-free strains.
SCIENTIFIC REPORTS
(2021)
Article
Microbiology
Shona Chandra et al.
Summary: This study successfully identified the microbiome and virome composition of ticks, including various bacterial endosymbionts and viruses. The discovery of a potentially pathogenic virus highlights the importance of further research in understanding tick-associated pathogens.
FRONTIERS IN MICROBIOLOGY
(2021)
Article
Biotechnology & Applied Microbiology
Hai-Jian Huang et al.
Summary: This study comprehensively analyzed the viromes of different cryptic species of the whitefly Bemisia tabaci, identifying 20 novel insect-specific viruses (ISVs) and revealing potential cross-infection between different cryptic species. Additionally, it was found that some ISVs can successfully replicate in the whitefly and the antiviral RNAi pathway of B. tabaci plays an active role in response to ISV infections.
NPJ BIOFILMS AND MICROBIOMES
(2021)
Article
Virology
Song Zhang et al.
Summary: Watermelon crinkle leaf-associated virus 1 and watermelon crinkle leaf-associated virus 2 are two unclassified members of the order Bunyavirales, phylogenetically related to Coguvirus genus. They possess a bipartite genome consisting of a negative-sense RNA1 and an ambisense RNA2, with RNA2 containing two open reading frames separated by a long AU-rich intergenic region. This genome organization, along with similar terminal sequences in RNA1 and RNA2, supports their classification as two new species in the genus Coguvirus.
ARCHIVES OF VIROLOGY
(2021)
Article
Virology
Peter J. Walker et al.
Summary: This article reports the changes to virus taxonomy approved and ratified by ICTV in March 2021. All proposals and revisions were passed by an absolute majority of ICTV members. ICTV mandated a new uniform rule for virus species naming, abolished the notion of a type species, and clarified its remit through an official definition of 'virus' and other types of mobile genetic elements.
ARCHIVES OF VIROLOGY
(2021)
Article
Virology
Fumei Zhao et al.
Summary: A novel Varicosa-like virus, tentatively named morning glory Varicosavirus (MGVV), was identified in a tall morning glory plant through high-throughput sequencing. The complete genome of MGVV contains two segments of negative-sense single-stranded RNA, encoding several proteins with varying degrees of similarity to known viral proteins. Phylogenetic analysis showed that MGVV clustered with other varicosaviruses, indicating its novelty as a member of the genus Varicosavirus in the family Rhabdoviridae.
ARCHIVES OF VIROLOGY
(2021)
Article
Virology
Daisuke Kobayashi et al.
Summary: Ticks are important vectors that transmit various pathogens, with tick-borne viruses being major agents of emerging and re-emerging infectious diseases. A novel virus, Toyo virus (TOYOV), was discovered during virome analysis of ticks in Japan, belonging to the Kaisodi group within the Uukuvirus genus. Further research on TOYOV will help in understanding its biological characteristics and etiological importance.
ARCHIVES OF VIROLOGY
(2021)
Article
Entomology
Xiaoqing Wang et al.
Summary: A novel RNA virus, Euproctis pseudoconspersa bunyavirus, was identified and found to be widely distributed in the field populations of E. pseudoconspersa. The replication of the virus in E. pseudoconspersa was confirmed through Tag-PCR. These findings contribute to the classification of bunyaviruses and provide insights into the diversity of commensal E. pseudoconspersa bunyavirus and its host.
JOURNAL OF INSECT SCIENCE
(2021)
Article
Virology
M. Chiapello et al.
Summary: Thrips species Frankliniella occidentalis and Thrips tabaci greatly impact horticultural crops by vectoring viruses, with a study in Italy identifying new viruses and describing a locally persistent core virome specific to distinct geographical locations.
JOURNAL OF VIROLOGY
(2021)
Article
Plant Sciences
Yanxiang Wang et al.
Summary: A novel cytorhabdovirus, tentatively named AcVD, was identified from kiwifruit in China, with a genome consisting of specific ORFs coding for proteins in distinct subcellular locations. This study presents the first evidence of AcVD infecting kiwifruit plants and provides comprehensive location and interaction maps to understand viral protein functions. AcVD shows similarities with reported cytorhabdoviruses, clustering with Wuhan insect virus 4 in phylogenetic analysis.
MOLECULAR PLANT PATHOLOGY
(2021)
Article
Virology
Nicolas Bejerman et al.
Summary: The study identified 27 novel rhabdovirus genomes associated with 25 different host plant species and one insect. Through homology searches in the NCBI's SRA data, these viral sequences were discovered, revealing the complexity and diversity of plant rhabdoviruses.
Article
Virology
Lee O. Rabbidge et al.
Summary: The study reports the discovery of the first emaravirus in New Zealand, named Karaka Okahu purepure virus, found on the endemic karaka tree. Phylogenetic analysis indicates its closest relatives are pear chlorotic leaf spot-associated virus and chrysanthemum mosaic-associated virus, forming a unique clade within the genus Emaravirus. The virus is proposed to be part of the family Emaravirus, showing less than 50% amino acid similarity to its closest relatives, indicating it is a novel species.
Article
Multidisciplinary Sciences
Fumihiro Kodama et al.
Summary: Kodama et al. discovered and characterized a novel tick-borne orthonairovirus, named Yezo virus (YEZV), in Japan. Serological testing and molecular screening suggested an endemic circulation of YEZV in Japan. The study indicates that YEZV is likely the causative pathogen of febrile illness transmitted by ticks in Japan.
NATURE COMMUNICATIONS
(2021)
Article
Virology
Bert Vanmechelen et al.
Summary: Recent metagenomics studies have identified previously undiscovered RNA viruses in various tick species, with the most prevalent European tick species, Ixodes ricinus, found to host a variety of viruses. Through high-throughput sequencing of tick samples from six different sites in Belgium, several new reoviruses were discovered, including a new Eyach virus strain, potentially indicating genetic reassortment. Screening of over 230 tick pools for selected viruses showed widespread distribution throughout the Belgian tick population, highlighting the importance of tick control measures.
Article
Virology
Chaerim Shin et al.
Summary: Varicosaviruses are bipartite RNA viruses that infect plants, with ZaVV1 being a novel member identified from common eelgrass. The genome of ZaVV1 consists of two segments, encoding different proteins with unknown functions.
Article
Virology
Vincenzo A. Costa et al.
Summary: This study investigated the viromes of freshwater fish in the Murray-Darling Basin to better understand the presence of viruses, particularly CyHV-3. While various vertebrate-associated and non-vertebrate-associated viruses were identified, CyHV-3 and related viruses were not detected. The study also revealed minimal virus transmission between invasive common carp and native fish species, indicating a lack of shared viruses despite co-existing for over fifty years.
Article
Virology
Vincenzo A. Costa et al.
Summary: Biological invasions pose significant threats to freshwater biodiversity, especially in the Murray-Darling Basin impacted by the introduction of common carp. Despite co-existing for over fifty years, there is limited virus transmission from common carp to native fish species, indicating a diverse array of viruses with deep evolutionary histories in fish.
Article
Multidisciplinary Sciences
Claudia Kohl et al.
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