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Jaime A. Castro-Mondragon et al.
NUCLEIC ACIDS RESEARCH (2022)
Enhancer grammar in development, evolution, and disease: dependencies and interplay
Granton A. Jindal et al.
DEVELOPMENTAL CELL (2021)
A flexible repertoire of transcription factor binding sites and a diversity threshold determines enhancer activity in embryonic stem cells
Gurdeep Singh et al.
GENOME RESEARCH (2021)
A model of active transcription hubs that unifies the roles of active promoters and enhancers
Iris Zhu et al.
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Transcriptional enhancers and their communication with gene promoters
Helen Ray-Jones et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2021)
Enhancers with tissue-specific activity are enriched in intronic regions
Beatrice Borsari et al.
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Mechanisms of enhancer action: the known and the unknown
Anil Panigrahi et al.
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Sequence and chromatin determinants of transcription factor binding and the establishment of cell type-specific binding patterns
Divyanshi Srivastava et al.
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Towards a comprehensive catalogue of validated and target-linked human enhancers
Molly Gasperini et al.
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Evaluating Enhancer Function and Transcription
Andrew Field et al.
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 89 (2020)
Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations
Ryne C. Ramaker et al.
GENOME RESEARCH (2020)
Global reference mapping of human transcription factor footprints
Jeff Vierstra et al.
NATURE (2020)
Occupancy maps of 208 chromatin-associated proteins in one human cell type
E. Christopher Partridge et al.
NATURE (2020)
Deep conservation of the enhancer regulatory code in animals
Emily S. Wong et al.
SCIENCE (2020)
HOT or not: examining the basis of high-occupancy target regions
Katarzyna Wreczycka et al.
NUCLEIC ACIDS RESEARCH (2019)
The Human Transcription Factors
Samuel A. Lambert et al.
CELL (2018)
Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells
Tahsin Stefan Barakat et al.
CELL STEM CELL (2018)
Enhancer redundancy provides phenotypic robustness in mammalian development
Marco Osterwalder et al.
NATURE (2018)
Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes
Sakthi D. Moorthy et al.
GENOME RESEARCH (2017)
High constitutive activity of a broad panel of housekeeping and tissue-specific cis-regulatory elements depends on a subset of ETS proteins
Alessia Curina et al.
GENES & DEVELOPMENT (2017)
A Comprehensive Mouse Transcriptomic BodyMap across 17 Tissues by RNA-seq
Bin Li et al.
SCIENTIFIC REPORTS (2017)
LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
Nathan C. Sheffield et al.
BIOINFORMATICS (2016)
TFBSTools: an R/bioconductor package for transcription factor binding site analysis
Ge Tan et al.
BIOINFORMATICS (2016)
Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution
Hannah K. Long et al.
CELL (2016)
Hierarchy within the mammary STAT5-driven Wap super-enhancer
Ha Youn Shin et al.
NATURE GENETICS (2016)
Genetic dissection of the α-globin super-enhancer in vivo
Deborah Hay et al.
NATURE GENETICS (2016)
Super-Enhancers at the Nanog Locus Differentially Regulate Neighboring Pluripotency-Associated Genes
Steven Blinka et al.
CELL REPORTS (2016)
Enhancer Evolution across 20 Mammalian Species
Diego Villar et al.
CELL (2015)
Enhancers: Holding Out for the Right Promoter
David S. Lorberbaum et al.
CURRENT BIOLOGY (2015)
The selection and function of cell type-specific enhancers
Sven Heinz et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2015)
Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation
Muhammad A. Zabidi et al.
NATURE (2015)
A Sox2 distal enhancer cluster regulates embryonic stem cell differentiation potential
Harry Y. Zhou et al.
GENES & DEVELOPMENT (2014)
An atlas of active enhancers across human cell types and tissues
Robin Andersson et al.
NATURE (2014)
Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution
Cosmas D. Arnold et al.
NATURE GENETICS (2014)
CRISPR Reveals a Distal Super-Enhancer Required for Sox2 Expression in Mouse Embryonic Stem Cells
Yan Li et al.
PLOS ONE (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
Warren A. Whyte et al.
CELL (2013)
Super-Enhancers in the Control of Cell Identity and Disease
Denes Hnisz et al.
CELL (2013)
Distinct Properties of Cell-Type-Specific and Shared Transcription Factor Binding Sites
Jason Gertz et al.
MOLECULAR CELL (2013)
Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model
Robin P. Smith et al.
NATURE GENETICS (2013)
Human housekeeping genes, revisited
Eli Eisenberg et al.
TRENDS IN GENETICS (2013)
Sequence and chromatin determinants of cell-type-specific transcription factor binding
Aaron Arvey et al.
GENOME RESEARCH (2012)
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Stephen G. Landt et al.
GENOME RESEARCH (2012)
An expansive human regulatory lexicon encoded in transcription factor footprints
Shane Neph et al.
NATURE (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
Kevin Y. Yip et al.
GENOME BIOLOGY (2012)
Perspectives on the RNA polymerase II core promoter
James T. Kadonaga
WILEY INTERDISCIPLINARY REVIEWS-DEVELOPMENTAL BIOLOGY (2012)
FIMO: scanning for occurrences of a given motif
Charles E. Grant et al.
BIOINFORMATICS (2011)
Widespread transcription at neuronal activity-regulated enhancers
Tae-Kyung Kim et al.
NATURE (2010)
ChIP-Seq identification of weakly conserved heart enhancers
Matthew J. Blow et al.
NATURE GENETICS (2010)
Histone H3K27ac separates active from poised enhancers and predicts developmental state
Menno P. Creyghton et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Cell line misidentification: the beginning of the end
John R. W. Masters
NATURE REVIEWS CANCER (2010)
Comparative Proteomic Phenotyping of Cell Lines and Primary Cells to Assess Preservation of Cell Type-specific Functions
Cuiping Pan et al.
MOLECULAR & CELLULAR PROTEOMICS (2009)
Histone modifications at human enhancers reflect global cell-type-specific gene expression
Nathaniel D. Heintzman et al.
NATURE (2009)
Transcription factories: gene expression in unions?
Heidi Sutherland et al.
NATURE REVIEWS GENETICS (2009)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
Nathaniel D. Heintzman et al.
NATURE GENETICS (2007)
Differential protein profiling of primary versus immortalized human RPE cells identifies expression patterns associated with cytoskeletal remodeling and cell survival
CS Alge et al.
JOURNAL OF PROTEOME RESEARCH (2006)
The β-globin nuclear compartment in development and erythroid differentiation
RJ Palstra et al.
NATURE GENETICS (2003)
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
LA Lettice et al.
HUMAN MOLECULAR GENETICS (2003)