4.6 Article

Gut microbiome as a key monitoring indicator for reintroductions of captive animals

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biology

Molecular mechanisms of adaptive evolution in wild animals and plants

Yibo Hu et al.

Summary: Wild animals and plants have developed adaptive traits through adaptive evolution, which is crucial for their survival. Understanding the molecular mechanisms of adaptive evolution is important for studying species diversification and inter-species interaction. This study reviews the latest research on adaptive traits, convergent evolution, and coevolution in wild animals and plants, highlighting the advances in molecular mechanisms and the future prospects in evolutionary biology.

SCIENCE CHINA-LIFE SCIENCES (2023)

Article Cell Biology

Seasonal shift of the gut microbiome synchronizes host peripheral circadian rhythm for physiological adaptation to a low-fat diet in the giant panda

Guangping Huang et al.

Summary: The gut microbiome varies with changes in host diet, and these variations may have important effects on host growth and development. In this study, fecal microbiota transplantation (FMT) was performed using diet-specific feces from giant pandas into germ-free mice. The results showed that the abundance of the butyrate-producing bacterium Clostridium butyricum was higher during the shoot eating season compared to the leaf-eating season, and this was consistent with the significant increase in host body mass. Mechanistic investigations revealed that butyrate extended the upregulation of the hepatic circadian gene Per2, subsequently increasing phospholipid biosynthesis.

CELL REPORTS (2022)

Editorial Material Multidisciplinary Sciences

Wildlife conservation and management in China: achievements, challenges and perspectives

Guangping Huang et al.

NATIONAL SCIENCE REVIEW (2021)

Article Biotechnology & Applied Microbiology

Engineering Pseudomonas protegens Pf-5 to improve its antifungal activity and nitrogen fixation

Xiaoshu Jing et al.

MICROBIAL BIOTECHNOLOGY (2020)

Article Ecology

Gut microbiota in reintroduction of giant panda

Jingsi Tang et al.

ECOLOGY AND EVOLUTION (2020)

Review Microbiology

Co-evolution and Co-speciation of Host-Gut Bacteria Systems

Mathieu Groussin et al.

CELL HOST & MICROBE (2020)

Review Biology

Conservation metagenomics: a new branch of conservation biology

Fuwen Wei et al.

SCIENCE CHINA-LIFE SCIENCES (2019)

Article Biodiversity Conservation

Reintroduction of the giant panda into the wild: A good start suggests a bright future

Zhisong Yang et al.

BIOLOGICAL CONSERVATION (2018)

Article Biochemistry & Molecular Biology

HMMER web server: 2018 update

Simon C. Potter et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemical Research Methods

Correcting for batch effects in case-control microbiome studies

Sean M. Gibbons et al.

PLOS COMPUTATIONAL BIOLOGY (2018)

Article Multidisciplinary Sciences

The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice

Alida Kindt et al.

NATURE COMMUNICATIONS (2018)

Review Ecology

Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?

Antton Alberdi et al.

TRENDS IN ECOLOGY & EVOLUTION (2016)

Article Biochemistry & Molecular Biology

Large-Scale Genetic Survey Provides Insights into the Captive Management and Reintroduction of Giant Pandas

Lei Shan et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemical Research Methods

UPARSE: highly accurate OTU sequences from microbial amplicon reads

Robert C. Edgar

NATURE METHODS (2013)

Article Biochemical Research Methods

CD-HIT: accelerated for clustering the next-generation sequencing data

Limin Fu et al.

BIOINFORMATICS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

UCHIME improves sensitivity and speed of chimera detection

Robert C. Edgar et al.

BIOINFORMATICS (2011)

Article Multidisciplinary Sciences

Enterotypes of the human gut microbiome

Manimozhiyan Arumugam et al.

NATURE (2011)

Article Multidisciplinary Sciences

Evidence of cellulose metabolism by the giant panda gut microbiome

Lifeng Zhu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemical Research Methods

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt et al.

BMC BIOINFORMATICS (2010)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Article Biochemistry & Molecular Biology

Captive breeding and the reintroduction of Mexican and red wolves

P. W. Hedrick et al.

MOLECULAR ECOLOGY (2008)

Review Ecology

Directions in reintroduction biology

Doug P. Armstrong et al.

TRENDS IN ECOLOGY & EVOLUTION (2008)

Review Biochemical Research Methods

Review and re-analysis of domain-specific 16S primers

GC Baker et al.

JOURNAL OF MICROBIOLOGICAL METHODS (2003)