4.4 Article

Genome-wide characterization of integrin (ITG) gene family and their expression profiling in half-smooth tongue sole (Cynoglossus semilaevis) upon Vibrio anguillarum infection

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Genomicus in 2022: comparative tools for thousands of genomes and reconstructed ancestors

Nga Thi Thuy Nguyen et al.

Summary: Genomicus is a database and web-server dedicated to comparative genomics in eukaryotes, offering graphical representation of conservation of genomic blocks and karyotype comparisons. It has synchronized with 60 Ensembl releases and expanded its functionality to support 1029 extant genomes and 621 ancestral reconstructions. New visualization and query tools are available for users.

NUCLEIC ACIDS RESEARCH (2022)

Article Fisheries

Transcriptome analysis of turbot (Scophthalmus maximus) head kidney and liver reveals immune mechanism in response to Vibrio anguillarum infection

Yuting Song et al.

Summary: The immune response of turbot to V. anguillarum infection was preliminarily explored through transcriptome analysis of the head kidney and liver.

JOURNAL OF FISH DISEASES (2022)

Article Biology

Nephronectin-integrin α8 signaling is required for proper migration of periocular neural crest cells during chick corneal development

Justin Ma et al.

Summary: During cornea development, the upregulation of nephronectin (Npnt) plays a crucial role in promoting cell migration into the cornea extracellular matrix by functioning as a substrate for integrin alpha 8-positive periocular neural crest (pNC) cells.
Review Medicine, Research & Experimental

Integrins are double-edged swords in pulmonary infectious diseases

Ye Yao et al.

Summary: Integrins play a dual role in pulmonary infectious diseases, promoting pathogen clearance while potentially causing tissue damage. Innovative therapeutic strategies targeting integrins offer promising approaches for the treatment of these diseases.

BIOMEDICINE & PHARMACOTHERAPY (2022)

Article Fisheries

Functional and expression analysis reveals the involvement of integrin αvβ3 in antiviral immunity of grass carp (Ctenopharyngodon idella)

Xiaoqing Xiong et al.

Summary: In this study, a newly discovered integrin αvβ3 in grass carp was found to interact with viral proteins and mediate antiviral immune response. Furthermore, the expression of this integrin was significantly upregulated in various tissues of grass carp after infection.

FISH & SHELLFISH IMMUNOLOGY (2022)

Article Fisheries

Response of chemokine receptors CXCR2 and integrin β2 after Streptococcus agalactiae and Aeromonas hydrophila challenge in GIFT strain of Nile tilapia Oreochromis niloticus

Qiaomu Hu et al.

Summary: This study cloned the CXCR2 and integrin β2 genes of Nile tilapia and found that they are predominantly expressed in immune tissues. The results suggest that CXCR2 and integrin β2 genes play a significant role in immune response in Nile tilapia.

DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2021)

Article Biochemistry & Molecular Biology

SMART: recent updates, new developments and status in 2020

Ivica Letunic et al.

Summary: SMART is a web resource for protein domain identification and annotation, with over 1300 manually curated models and 68 new models added for various recombinase families. Updates also include synchronization with UniProt, Ensembl, and STRING databases, as well as enhancements to the protein display engine and domain architecture analysis components.

NUCLEIC ACIDS RESEARCH (2021)

Article Gastroenterology & Hepatology

Pharmacological HIF-1 stabilization promotes intestinal epithelial healing through regulation of α-integrin expression and function

Bridie J. Goggins et al.

Summary: HIF-1 plays a crucial role in intestinal epithelial restitution by selectively inducing integrins alpha 6 and alpha 2 to promote migration and proliferation. Treatment with HIF-stabilizing prolyl-hydroxylase inhibitors accelerates intestinal mucosal healing by inducing epithelial integrin expression.

AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2021)

Article Biochemistry & Molecular Biology

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

Ivica Letunic et al.

Summary: The Interactive Tree Of Life is an online tool for displaying, manipulating, and annotating phylogenetic and other trees. The latest version 5 introduces a new tree display engine and several new features, such as a new dataset type and expanded annotation options. Users can now also manually annotate trees by hand, providing more flexibility and control.

NUCLEIC ACIDS RESEARCH (2021)

Article Fisheries

Molecular cloning and sequence characterization of common carp (Cyprinus carpio) integrin β1 (ITGβ1) and its temporal expression in response to CyHV-3

Xiaona Jiang et al.

Summary: Integrins play a crucial role in cell adhesion and virus entry, and the study successfully cloned the full-length cDNA of CcITGβ1 from common carp, which was found to be widely expressed in various tissues, with highest expression in the intestine. Additionally, CcITGβ1 expression was significantly lower in fish resistant to CyHV-3, particularly in the early infection stage, suggesting a potential role in the different stages of CyHV-3 infection.

AQUACULTURE INTERNATIONAL (2021)

Article Biochemistry & Molecular Biology

Combining of transcriptomic and proteomic data to mine immune-related genes and proteins in the liver of Cynoglossus semilaevis challenged with Vibrio anguillarum

Longjiang Qi et al.

Summary: The study analyzed the transcriptomics and proteomics of the liver of Cynoglossus semilaevis infected with Vibrio anguillarum, revealing the significance of five key signaling pathways in enhancing liver immune defense. It identified important genes and proteins involved in immune response, recognition of pathogens, inflammatory response, and phagocytosis. The findings provide valuable information for further research on the mechanisms of liver immune response.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS (2021)

Article Biochemistry & Molecular Biology

Pfam: The protein families database in 2021

Jaina Mistry et al.

Summary: The Pfam database has recently added a large number of protein families and domains, made revisions for COVID-19 research, and introduced Pfam-B as a supplement. These updates and improvements can help researchers classify protein sequences more effectively and conduct related studies.

NUCLEIC ACIDS RESEARCH (2021)

Article Biochemistry & Molecular Biology

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

Chengjie Chen et al.

MOLECULAR PLANT (2020)

Article Biotechnology & Applied Microbiology

SignalP 5.0 improves signal peptide predictions using deep neural networks

Jose Juan Almagro Armenteros et al.

NATURE BIOTECHNOLOGY (2019)

Review Fisheries

Vibriosis in cultured marine fishes: a review

Nurliyana Mohamad et al.

AQUACULTURE (2019)

Article Cell Biology

The role of α9ß1 integrin and its ligands in the development of autoimmune diseases

Shigeyuki Kon et al.

JOURNAL OF CELL COMMUNICATION AND SIGNALING (2018)

Article Biochemistry & Molecular Biology

ITGB1b-Deficient Rare Minnows Delay Grass Carp Reovirus (GCRV) Entry and Attenuate GCRV-Triggered Apoptosis

Geng Chen et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2018)

Article Multidisciplinary Sciences

Neutrophil recruitment limited by high-affinity bent β2 integrin binding ligand in cis

Zhichao Fan et al.

NATURE COMMUNICATIONS (2016)

Article Biochemistry & Molecular Biology

The MEME Suite

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

Koichiro Tamura et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Review Immunology

Neutrophil recruitment and function in health and inflammation

Elzbieta Kolaczkowska et al.

NATURE REVIEWS IMMUNOLOGY (2013)

Review Immunology

Integrin signalling and function in immune cells

Yanbo Zhang et al.

IMMUNOLOGY (2012)

Review Biochemistry & Molecular Biology

Integrins during evolution: Evolutionary trees and model organisms

Mark S. Johnson et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2009)

Article Biochemical Research Methods

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

P. Librado et al.

BIOINFORMATICS (2009)

Article Fisheries

CR3 complement receptor: Cloning and characterization in rainbow trout

Angeliki Mikrou et al.

FISH & SHELLFISH IMMUNOLOGY (2009)

Editorial Material Cell Biology

Integrins in immunity

Rachel Evans et al.

JOURNAL OF CELL SCIENCE (2009)

Article Immunology

Integrin β1 regulates phagosome maturation in macrophages through Rac expression

Qing-Qing Wang et al.

JOURNAL OF IMMUNOLOGY (2008)

Article Biochemical Research Methods

Analyzing real-time PCR data by the comparative C-T method

Thomas D. Schmittgen et al.

NATURE PROTOCOLS (2008)

Article Biochemical Research Methods

Clustal W and clustal X version 2.0

M. A. Larkin et al.

BIOINFORMATICS (2007)

Article Multidisciplinary Sciences

Helicobacter exploits integrin for type IV secretion and kinase activation

Terry Kwok et al.

NATURE (2007)

Article Biochemistry & Molecular Biology

WoLF PSORT: protein localization predictor

Paul Horton et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

Integrin evolution: Insights from ascidian and teleost fish genomes

M Huhtala et al.

MATRIX BIOLOGY (2005)

Review Immunology

Integrins and T cell-mediated immunity

JT Pribila et al.

ANNUAL REVIEW OF IMMUNOLOGY (2004)

Article Biochemistry & Molecular Biology

ExPASy: the proteomics server for in-depth protein knowledge and analysis

E Gasteiger et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biophysics

The strength of integrin binding between neutrophils and endothelial cells

V Labrador et al.

EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS (2003)

Review Biochemistry & Molecular Biology

Integrins: Bidirectional, allosteric signaling machines

RO Hynes

Review Cell Biology

Avidity regulation of integrins: the driving force in leukocyte adhesion

Y van Kooyk et al.

CURRENT OPINION IN CELL BIOLOGY (2000)