4.5 Review

Lamb-Shaffer syndrome: 20 Spanish patients and literature review expands the view of neurodevelopmental disorders caused by SOX5 haploinsufficiency

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Article Genetics & Heredity

SOX5: Lamb-Shaffer syndrome-A case series further expanding the phenotypic spectrum

Katharine Edgerley et al.

Summary: The study identified 16 patients with Lamb-Shaffer Syndrome (LSS) who have heterozygous variation in the SOX5 gene. These patients exhibit global developmental delay, speech delay, mild to moderate intellectual disability, behavioral abnormalities, and subtle characteristic facial features. The study also found that patients with single nucleotide variants are more likely to have growth delay and microcephaly. Additionally, gonadal mosaicism was observed in one family.

AMERICAN JOURNAL OF MEDICAL GENETICS PART A (2023)

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Clinical characterization of Lamb-Shaffer syndrome: a case report and literature review

Guo-qing Zhu et al.

Summary: Lamb-Shaffer syndrome is a rare neurodevelopmental disorder caused by haploinsufficiency of SOX5 gene. However, research on the clinical features of patients with Lamb-Shaffer syndrome carrying the same c.1477C > T (p.R493*) allele is limited.

BMC MEDICAL GENOMICS (2023)

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CNV-ClinViewer: enhancing the clinical interpretation of large copy-number variants online

Marie Macnee et al.

Summary: CNV-ClinViewer is an open-source web application for clinical evaluation and visual exploration of CNVs. It allows real-time interactive exploration of large CNV datasets and facilitates semi-automated clinical CNV interpretation. It enhances patient care for clinical investigators and translational genomic research for basic scientists.

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Variant interpretation using population databases: Lessons from gnomAD

Sanna Gudmundsson et al.

Summary: Reference population databases are crucial for variant and gene interpretation, aiding in identifying pathogenic variants and discovering new disease-gene relationships. The Genome Aggregation Database is currently the largest and most widely utilized collection of population variation, accessible through the gnomAD browser for rapid and intuitive variant analysis.

HUMAN MUTATION (2022)

Article Cell Biology

SoxD genes are required for adult neural stem cell activation

Lingling Li et al.

Summary: Research shows that SoxD transcription factors Sox5 and Sox6 are enriched in activated radial glia-like neural stem cells, and deletion of these genes in adult mouse brains affects RGL activation and generation of new neurons. Loss of Sox5 also hinders activation of RGLs driven by neurogenic stimuli.

CELL REPORTS (2022)

Article Biochemistry & Molecular Biology

SOX5 promotes cell growth and migration through modulating DNMT1/p21 pathway in bladder cancer

Longxiang Wu et al.

Summary: This study reveals the increased expression of SOX5 in bladder cancer and its role in promoting cell growth and migration. It also shows that suppressing SOX5 inhibits the expression of DNMT1 and overexpressing DNMT1 alleviates the cell progress of bladder cancer inhibited by SOX5. The study suggests that SOX5 exerts its functions in bladder cancer cells by modulating the SOX5/DNMT1/p21 pathway.

ACTA BIOCHIMICA ET BIOPHYSICA SINICA (2022)

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Clinical spectrum and follow-up in six individuals with Lamb-Shaffer syndrome (SOX5)

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SPEN haploinsufficiency causes a neurodevelopmental disorder overlapping proximal 1p36 deletion syndrome with an episignature of X chromosomes in females

Francesca Clementina Radio et al.

Summary: Deletion 1p36 (del1p36) syndrome is the most common human disorder caused by a terminal autosomal deletion, characterized by molecular and clinical heterogeneity. The loss of SPEN gene is associated with a neurodevelopmental disorder that significantly overlaps with features of del1p36 syndrome, including developmental delay, autism, anxiety, aggressive behavior, and more. SPEN haploinsufficiency is a major contributor to this disorder, with specific epigenetic effects on the X chromosome in affected females.

AMERICAN JOURNAL OF HUMAN GENETICS (2021)

Article Genetics & Heredity

CADD-Splice-improving genome-wide variant effect prediction using deep learning-derived splice scores

Philipp Rentzsch et al.

Summary: The study compared several machine learning methods that score variant effects on splicing using an experimental dataset, integrating the best methods into general variant effect prediction models and evaluating the impact on the classification of known pathogenic variants. The inclusion of splicing DNN effect scores substantially improved predictions across multiple variant categories in the new CADD-Splice model, without compromising overall performance.

GENOME MEDICINE (2021)

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REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants

Nilah M. Ioannidis et al.

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Sox5 Controls Dorsal Progenitor and Interneuron Specification in the Spinal Cord

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Deletion 12p12 Involving SOX5 in Two Children With Developmental Delay and Dysmorphic Features

Ryan W. Y. Lee et al.

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SHOX interacts with the chondrogenic transcription factors SOX5 and SOX6 to activate the aggrecan enhancer

Miriam Aza-Carmona et al.

HUMAN MOLECULAR GENETICS (2011)

Article Biochemistry & Molecular Biology

SOX5 controls cell cycle progression in neural progenitors by interfering with the WNT-β-catenin pathway

Patricia L. Martinez-Morales et al.

EMBO REPORTS (2010)

Article Multidisciplinary Sciences

SOX5 postmitotically regulates migration, postmigratory differentiation, and projections of subplate and deep-layer neocortical neurons

Kenneth Y. Kwan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)