4.4 Article

Microbiota of a seepage face at the mouth of a subterranean estuary: diversity, distribution and substrate dependence

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Environmental Sciences

A combined approach detected novel species diversity and distribution of dinoflagellate cysts in the Yellow Sea, China

Xiaohan Liu et al.

Summary: This study investigated dinoflagellate cysts in the Yellow Sea of China using metabarcoding sequencing and single-cyst morpho-molecular identification. It identified many new cyst species and found a significant controlling effect of the Yellow Sea Cold Water Mass on cyst composition. The findings provide important insights into the risks and ecology of dinoflagellate harmful algal blooms (HABs).

MARINE POLLUTION BULLETIN (2023)

Article Geosciences, Multidisciplinary

Sandy seepage faces as bioactive nitrate reactors: Biogeochemistry, microbial ecology and metagenomics

Shan Jiang et al.

Summary: This study investigates the turnover of dissolved inorganic nitrogen in subterranean estuaries in Sanggou Bay, China. The results show that ammonium and nitrite concentrations did not vary significantly with depth or season, while nitrate concentrations peaked in the bottom sediment layer and were linked to nitrogen production through organic matter decomposition, ammonification, and nitrification.

GEOSCIENCE FRONTIERS (2023)

Article Oceanography

Benthic microbial biogeography along the continental shelf shaped by substrates from the Changjiang River plume

Yongjun Wei et al.

Summary: The study investigated sediment microbial composition in a continental shelf affected by the Changjiang River plume, revealing spatial variability in microbial diversity and metabolic activity related to terrestrial and phytoplankton-derived substrates.

ACTA OCEANOLOGICA SINICA (2022)

Article Green & Sustainable Science & Technology

Carbon-rich substrates altered microbial communities with indication of carbon metabolism functional shifting in a degraded salt marsh of the Yellow River Delta, China

Lu Yu et al.

Summary: Coastal salt marshes are degrading globally, but the addition of carbon-rich substrates can reshape the microbial structure and carbon metabolism, with biochar having a higher potential to improve ecosystem services.

JOURNAL OF CLEANER PRODUCTION (2022)

Article Marine & Freshwater Biology

Seasonal variability in environmental parameters influence bacterial communities in mangrove sediments along an estuarine gradient

Sheryl Oliveira Fernandes et al.

Summary: This study investigated the seasonal variations in bacterial communities in three mangrove sites along the Mandovi estuary in India. The results showed that bacterial communities were influenced by seasonal fluctuations in environmental variables, and mangroves were identified as biodiversity hotspots.

ESTUARINE COASTAL AND SHELF SCIENCE (2022)

Article Microbiology

On the hidden diversity and niche specialization of the microbial realm of subterranean estuaries

Elisa Calvo-Martin et al.

Summary: This study explores the microbial ecology of two neighboring but contrasting subterranean estuaries, revealing their microbial composition, abundance, heterotrophic production, and their geochemical drivers. The results show that different subterranean estuaries have different microbial community characteristics, which are closely related to the biogeochemical processes in these estuaries.

ENVIRONMENTAL MICROBIOLOGY (2022)

Article Environmental Sciences

The effects of subterranean estuary dynamics on nutrient resource ratio availability to microphytobenthos in a coastal lagoon

Carlos Rocha et al.

Summary: The causal links between subterranean estuary dynamics, climatological drivers, and the ecology of coastal ecosystems are important for the integrated management of these systems. This study examines the composition of submarine groundwater discharge (SGD) to a lagoon and its regulation by the annual oscillation of the local subterranean estuary. The study finds that the dynamics of the subterranean estuary and the resulting pH oscillation determine the nutrient composition ratio in SGD and shape primary production dynamics, emphasizing the importance of linked groundwater reservoirs for ecosystem function.

SCIENCE OF THE TOTAL ENVIRONMENT (2022)

Article Biochemistry & Molecular Biology

High spatial heterogeneity and low connectivity of bacterial communities along a Mediterranean subterranean estuary

Clara Ruiz-Gonzalez et al.

Summary: This study provides the first spatially-resolved characterization of bacterial assemblages in a coastal aquifer in the NW Mediterranean. The researchers found large variations in prokaryotic abundances, activity, and diversity along the salinity gradient, reflecting the pronounced physicochemical gradients. The study also revealed highly heterogeneous prokaryotic communities in subterranean estuaries, indicating spatial variability in their role in nutrient transformation within these land-sea transition zones.

MOLECULAR ECOLOGY (2022)

Article Environmental Sciences

Phosphorus removal performance, intracellular metabolites and clade-level community structure of Tetrasphaera-dominated polyphosphate accumulating organisms at different temperatures

Hongjun Liu et al.

Summary: This study investigated the impact of temperature changes on Tetrasphaera-PAOs and found that at lower temperatures their bioactivity was inhibited, while at higher temperatures the efficiency was very high. Temperature variation can affect the distribution of Tetrasphaera clades, which may be a main reason for EBPR performance.

SCIENCE OF THE TOTAL ENVIRONMENT (2022)

Article Green & Sustainable Science & Technology

Performance and microbial communities of a novel integrated industrial-scale pulp and paper wastewater treatment plant

Jiawei Liang et al.

Summary: An efficient industrial-scale pulp and paper wastewater treatment plant (PP-WWTP) integrating physicochemical and biological processes was investigated in this study. The plant successfully treated high-level pollutants in the wastewater and generated significant economic benefits.

JOURNAL OF CLEANER PRODUCTION (2021)

Article Marine & Freshwater Biology

A place for subterranean estuaries in the coastal zone

Carlos Rocha et al.

Summary: Subterranean estuaries (STEs) are important interconnected systems that drive water quality, ecology, and biogeochemical cycles in nearby coastal ecosystems. However, lack of awareness and recognition of STE functions, as well as compartmentalization of surface and groundwater systems in research, hinder a holistic understanding of coastal ecosystems and slow down the development of science-based ecosystem management approaches.

ESTUARINE COASTAL AND SHELF SCIENCE (2021)

Article Environmental Sciences

Molecular Traits of Dissolved Organic Matter in the Subterranean Estuary of a High-Energy Beach: Indications of Sources and Sinks

Hannelore Waska et al.

Summary: The research revealed that the high-energy beach Subterranean Estuary (STE) has a high diversity and heterogeneity of dissolved organic matter (DOM), possibly due to uneven distribution of buried peat lenses. Along the coast, there is an increasing degradation of soluble DOM and a continuous decline in oxygen concentrations, indicating a consistent degradation trend even in dynamic environments.

FRONTIERS IN MARINE SCIENCE (2021)

Article Environmental Sciences

Reactive Solute Transport Through Two Contrasting Subterranean Estuary Exit Sites in the Ilia de Vigo (NW Iberian Peninsula)

Elisa Calvo-Martin et al.

Summary: Subterranean estuaries are zones where continental groundwaters and saltwaters meet, impacting nutrient fluxes to coastal areas. Two STEs in NW Iberian Peninsula were studied for nitrogen biogeochemistry, showing seasonal water circulation variations and contrasting roles as nitrogen sinks or sources. The presence of gravel layers alters the typical structure of STEs, affecting nitrate concentrations and groundwater-borne nitrogen fluxes to the coast.

FRONTIERS IN MARINE SCIENCE (2021)

Article Environmental Sciences

Seasonal Dynamics of Surface Dissolved Organic Matter in the South China Sea and the Straits of Malacca: Implications for Biogeochemical Province Delineation of Marginal Seas

Yixue Zhang et al.

Summary: Biogeochemical provinces are a useful tool for identifying homogeneous biogeochemical characteristics and ecosystem dynamics in the open ocean, but may not be directly applicable to marginal seas due to their complex and small-scale changes. Through continuous surface-water sampling in the South China Sea and Straits of Malacca, the study delineated five biogeochemical provinces in each season, revealing spatial and seasonal heterogeneity of hydrological and dissolved organic matter properties in these regions.

JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES (2021)

Review Environmental Sciences

The Beach Aquifer Microbiome: Research Gaps and Data Needs

Anand Archana et al.

Summary: Beach aquifers, unique ecosystems with steep chemical and physical gradients, have microorganisms that play vital biogeochemical roles, despite being poorly understood. Current knowledge is primarily informed by 16S ribosomal RNA gene sequences, with potential for further investigation using metagenomics and metatranscriptomics. Understanding microbial roles in elemental cycling and carbon stocks in beach aquifers is critical for global climate models.

FRONTIERS IN ENVIRONMENTAL SCIENCE (2021)

Article Environmental Sciences

Response of Nitrate Processing to Bio-labile Dissolved Organic Matter Supply Under Variable Oxygen Conditions in a Sandy Beach Face

Shan Jiang et al.

Summary: The study demonstrates that the removal of NO3− in permeable sediments relies mainly on anaerobic conditions at particle surfaces and the dependence on sedimentary organic matter as an electron supplier. When dissolved oxygen reaches sub-oxic conditions, the addition of glucose benefits NO3− reduction.

FRONTIERS IN MARINE SCIENCE (2021)

Article Oceanography

Denitrification-nitrification process in permeable coastal sediments: An investigation on the effect of salinity and nitrate availability using flow-through reactors

Shan Jiang et al.

Summary: Permeable coastal sediments play a crucial role in transforming nutrients through biogeochemical reactions in the littoral zone. Experimental results indicate that the reactions of nitrate in sediments are influenced by salinity and nitrate concentration, while phosphorus reactions are independent of these factors.

ACTA OCEANOLOGICA SINICA (2021)

Review Environmental Sciences

Submarine groundwater discharge impacts on coastal nutrient biogeochemistry

Isaac R. Santos et al.

Summary: Submarine groundwater discharge (SGD) plays a significant role in connecting terrestrial and marine systems by releasing nutrients into coastal waters. SGD-derived nitrogen inputs can alleviate nitrogen limitation in coastal ecosystems. Saline SGD is a widespread source of recycled nutrients to global coastal waters, while fresh SGD acts as a localized point source of new nutrients.

NATURE REVIEWS EARTH & ENVIRONMENT (2021)

Article Environmental Sciences

Organic carbon in a seepage face of a subterranean estuary: Turnover and microbial interrelations

Shan Jiang et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2020)

Article Environmental Sciences

Bacterial-derived nutrient and carbon source-sink behaviors in a sandy beach subterranean estuary

Xiaogang Chen et al.

MARINE POLLUTION BULLETIN (2020)

Article Environmental Sciences

Microbial community structure associated with submarine groundwater discharge in northern Java (Indonesia)

Dini Adyasari et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2019)

Review Microbiology

Keystone taxa as drivers of microbiome structure and functioning

Samiran Banerjee et al.

NATURE REVIEWS MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

Radium tracing nutrient inputs through submarine groundwater discharge in the global ocean

Hyung-Mi Cho et al.

SCIENTIFIC REPORTS (2018)

Article Engineering, Environmental

Molecular Fractionation of Dissolved Organic Matter in a Shallow Subterranean Estuary: The Role of the Iron Curtain

Annika Linkhorst et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2017)

Article Soil Science

Bacterial communities in oil contaminated soils: Biogeography and co-occurrence patterns

Shuo Jiao et al.

SOIL BIOLOGY & BIOCHEMISTRY (2016)

Article Biochemical Research Methods

Error filtering, pair assembly and error correction for next-generation sequencing reads

Robert C. Edgar et al.

BIOINFORMATICS (2015)

Article Marine & Freshwater Biology

Carbon, nutrient and trace metal cycling in sandy sediments: A comparison of high-energy beaches and backbarrier tidal flats

Anja Reckhardt et al.

ESTUARINE COASTAL AND SHELF SCIENCE (2015)

Article Geosciences, Multidisciplinary

Effect of suspended kelp culture on water exchange as estimated by in situ current measurement in Sanggou Bay, China

Dingyong Zeng et al.

JOURNAL OF MARINE SYSTEMS (2015)

Article Biotechnology & Applied Microbiology

Diversity and Transport of Microorganisms in Intertidal Sands of the California Coast

Alexandria B. Boehm et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)

Article Biochemistry & Molecular Biology

Ribosomal Database Project: data and tools for high throughput rRNA analysis

James R. Cole et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Oceanography

Seasonal variations in phytoplankton community structure in the Sanggou, Ailian, and Lidao Bays

Yuan Mingli et al.

JOURNAL OF OCEAN UNIVERSITY OF CHINA (2014)

Article Biochemical Research Methods

UPARSE: highly accurate OTU sequences from microbial amplicon reads

Robert C. Edgar

NATURE METHODS (2013)

Review Marine & Freshwater Biology

The Effect of Submarine Groundwater Discharge on the Ocean

Willard S. Moore

ANNUAL REVIEW OF MARINE SCIENCE (2010)

Article Biochemical Research Methods

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar

BIOINFORMATICS (2010)

Article Microbiology

Pelagibius litoralis gen. nov., sp nov., a marine bacterium in the family Rhodospirillaceae isolated from coastal seawater

Dong Han Choi et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2009)

Article Oceanography

Salt-freshwater dynamics in a subterranean estuary over a spring-neap tidal cycle

C. Robinson et al.

JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS (2007)

Article Multidisciplinary Sciences

Temperature-driven decoupling of key phases of organic matter degradation in marine sediments

NB Weston et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)