4.0 Article

Complete Genome Sequence of the Ice-Nucleation-Active Pseudomonas syringae Strain MUP17, Isolated from the Frost-Damaged Barley Cultivar Hordeum vulgare cv. La Trobe

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

Ivica Letunic et al.

Summary: The Interactive Tree Of Life is an online tool for displaying, manipulating, and annotating phylogenetic and other trees. The latest version 5 introduces a new tree display engine and several new features, such as a new dataset type and expanded annotation options. Users can now also manually annotate trees by hand, providing more flexibility and control.

NUCLEIC ACIDS RESEARCH (2021)

Article Biochemistry & Molecular Biology

The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities

I-Min A. Chen et al.

Summary: The Integrated Microbial Genomes & Microbiomes system at the DOE's Joint Genome Institute contains annotated genome datasets and metagenome bins, with advanced search functions and a new statistical analysis tool available in IMG v 6.0. The updated web user interface includes a Help page and webinar tutorials to assist users in understanding and utilizing various IMG functions and tools in their research. New datasets have been processed with an extended prokaryotic annotation pipeline v.5, featuring expanded protein family assignments.

NUCLEIC ACIDS RESEARCH (2021)

Article Biochemistry & Molecular Biology

Genomes OnLine Database (GOLD) v.8: overview and updates

Supratim Mukherjee et al.

Summary: The Genomes OnLine Database (GOLD) is a manually curated collection of genome projects and their metadata, with over 1.17 million entries. Users can browse, search, and input project details in GOLD, ensuring accurate metadata documentation for analysis. The database also imports projects from public repositories to maintain a reference dataset for the scientific community.

NUCLEIC ACIDS RESEARCH (2021)

Article Biotechnology & Applied Microbiology

Assembly of long, error-prone reads using repeat graphs

Mikhail Kolmogorov et al.

NATURE BIOTECHNOLOGY (2019)

Article Biochemical Research Methods

Minimap2: pairwise alignment for nucleotide sequences

Heng Li

BIOINFORMATICS (2018)

Article Multidisciplinary Sciences

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

Chirag Jain et al.

NATURE COMMUNICATIONS (2018)

Article Biochemistry & Molecular Biology

NCBI prokaryotic genome annotation pipeline

Tatiana Tatusova et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Genetics & Heredity

Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419

Wayne Reeve et al.

STANDARDS IN GENOMIC SCIENCES (2010)

Review Microbiology

Bacteria in the leaf ecosystem with emphasis on Pseudomonas syringae - a pathogen, ice nucleus, and epiphyte

SS Hirano et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)