4.7 Article

SSR and SNP Marker-Based Investigation of Indian Rice Landraces in Relation to Their Genetic Diversity, Population Structure, and Geographical Isolation

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Multiplex molecular marker-assisted analysis of significant pathogens of cotton (Gossypium sp.)

R. L. Chavhan et al.

Summary: Plant pathogens reduce crop quality and yield, resulting in economic losses. Molecular markers based on ITS regions, pthN gene, and CP gene can be used for early and accurate detection of fungal, bacterial, and viral pathogens, respectively. The development of multiplexed assays allows the simultaneous detection of multiple pathogens.

BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY (2023)

Article Biochemistry & Molecular Biology

Evaluation of gene flow and genetic diversity in rice accessions across Kurdistan region-iraq using SSR markers

Diyar Ahmed Hassan et al.

Summary: This study investigated the diversity of rice accessions grown in the Kurdistan region, revealing two subpopulations and indicating very low gene flow. The results of this research provide important information for initiating breeding and improvement programs for rice in the Kurdistan region.

MOLECULAR BIOLOGY REPORTS (2022)

Article Biochemistry & Molecular Biology

Genetic diversity and population structure of rice (Oryza sativa L.) landraces from Kerala, India analyzed through genotyping-by-sequencing

Maya Peringottillam et al.

Summary: Researchers used sequencing technology to study the molecular characteristics of rice varieties in Kerala. They identified high-quality SNPs and analyzed genetic diversity and population structure. Results showed strong genetic differentiation among rice varieties and slow LD decay. The study suggests that these rice varieties are suitable for genetic association analysis and marker detection.

MOLECULAR GENETICS AND GENOMICS (2022)

Article Biochemistry & Molecular Biology

Fine-scale genetic structure of the rice landrace population in Japan

Kenji Fujino et al.

Summary: This study elucidated the genetic population structure differences of rice landraces across Japan and identified two phases of differentiation, namely western to eastern and southern to northern phases. These differences may have facilitated the expansion of genetic diversity among local regions.

MOLECULAR GENETICS AND GENOMICS (2022)

Article Multidisciplinary Sciences

Assessment of genetic diversity and volatile content of commercially grown banana (Musa spp.) cultivars

Vidya R. Hinge et al.

Summary: This study investigated the molecular profiling of 20 banana cultivars and identified 34 biomarkers for clonal fidelity analysis. The research also discovered important volatile compounds responsible for banana aroma. These findings have significant implications for breeding and the authentic identification of commercial banana cultivars.

SCIENTIFIC REPORTS (2022)

Article Genetics & Heredity

Exploring the Genetic Diversity and Population Structure of Wheat Landrace Population Conserved at ICARDA Genebank

Muhammad Massub Tehseen et al.

Summary: In this study, genetic diversity and population structure of 600 bread wheat landraces were analyzed using SNP markers. The results showed that the population could be grouped into three subpopulations based on geographical information rather than countries. Additionally, genetic distance analysis revealed significant differences between landraces from different countries.

FRONTIERS IN GENETICS (2022)

Article Biology

Association analysis and evaluation of genetic diversity in wheat genotypes using SSR markers

S. Farhangian-kashani et al.

Summary: This study utilized 105 wheat genotypes to study genetic diversity and identified morpho-physiological traits associated with salinity tolerance. SSR marker analysis revealed high genetic diversity and informative markers, with gpw2181 marker being suggested to play a key role in salt stress tolerance.

BIOLOGIA FUTURA (2021)

Article Agronomy

Genetic Diversity and Population Structure of Soybean Lines Adapted to Sub-Saharan Africa Using Single Nucleotide Polymorphism (SNP) Markers

Subhash Chander et al.

Summary: Genetic diversity study of elite soybean genotypes in SSA using high-throughput SNP markers showed a broad genetic base, with three major clusters identified through cluster analysis. Model-based STRUCTURE and DAPC analysis exhibited high consistency in subpopulation allocation, suggesting potential for selecting parents for future cultivar breeding.

AGRONOMY-BASEL (2021)

Article Agronomy

Estimation of the Genetic Diversity and Population Structure of Thailand's Rice Landraces Using SNP Markers

Wanchana Aesomnuk et al.

Summary: The study reveals rich genetic diversity in rice germplasm resources in different geographical regions of Thailand, with high genetic differentiation within populations. The greatest genetic differentiation was found between the northeastern and southern populations, while the smallest genetic differentiation was observed between the northern and northeastern populations. There is a significant relationship between genetic distance and geographic distance among Thai rice landraces.

AGRONOMY-BASEL (2021)

Article Biotechnology & Applied Microbiology

Molecular genetic diversity and population structure analyses of rutabaga accessions from Nordic countries as revealed by single nucleotide polymorphism markers

Zhiyu Yu et al.

Summary: This study investigated the genetic diversity of 124 rutabaga accessions from five Nordic countries using a 15K SNP Brassica array. The results showed that accessions from Norway, Sweden, Finland, and Denmark were genetically similar, while those from Iceland were significantly different. Icelandic rutabaga accessions were found to offer valuable germplasm for crop improvement.

BMC GENOMICS (2021)

Article Biochemistry & Molecular Biology

SSR marker-based genetic diversity analysis and SNP haplotyping of genes associating abiotic and biotic stress tolerance, rice growth and development and yield across 93 rice landraces

Smitha Kunhiraman Vasumathy et al.

Summary: This study revealed the high genetic diversity among the unexploited rice landraces cultivated in Kerala, India. Utilizing SSR markers for genetic studies is advisable, and haplotype analysis has shown promise for designing next-generation rice varieties.

MOLECULAR BIOLOGY REPORTS (2021)

Article Multidisciplinary Sciences

Elucidating SNP-based genetic diversity and population structure of advanced breeding lines of bread wheat (Triticum aestivum L.)

Vipin Tomar et al.

Summary: The study investigated the population structure and genetic diversity of 141 advanced wheat breeding lines using single nucleotide polymorphism markers. The results showed substantial gene flow and considerable genetic diversity within the population, indicating a good source for wheat improvement. AMOVA analysis detected excessive gene flow among populations, providing important information for enhancing genetic gain in South Asian wheat breeding programs.
Article Biochemistry & Molecular Biology

Characterization of genetic diversity and population structure in wheat using array based SNP markers

Deepender Kumar et al.

MOLECULAR BIOLOGY REPORTS (2020)

Article Agriculture, Multidisciplinary

Genetic characterization and population structure of maize populations using SSR markers

G. B. Adu et al.

ANNALS OF AGRICULTURAL SCIENCE (2019)

Article Biochemistry & Molecular Biology

STRUCTURESELECTOR: A web-based software to select and visualize the optimal number of clusters using multiple methods

Yu-Long Li et al.

MOLECULAR ECOLOGY RESOURCES (2018)

Article Biotechnology & Applied Microbiology

SNP diversity within and among Brassica rapa accessions reveals no geographic differentiation

P. Tanhuanpaa et al.

GENOME (2016)

Article Biochemistry & Molecular Biology

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Multidisciplinary Sciences

Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice

Nisha Singh et al.

SCIENTIFIC REPORTS (2015)

Article Biochemistry & Molecular Biology

A High-Density SNP Genotyping Array for Rice Biology and Molecular Breeding

Haodong Chen et al.

MOLECULAR PLANT (2014)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Review Biochemistry & Molecular Biology

Current trends in microsatellite genotyping

E. Guichoux et al.

MOLECULAR ECOLOGY RESOURCES (2011)

Article Agronomy

Highly variable SSR markers suitable for rice genotyping using agarose gels

Harvinder Singh et al.

MOLECULAR BREEDING (2010)

Article Multidisciplinary Sciences

Genetic structure and isolation by distance in a landrace of Thai rice

Tonapha Pusadee et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemical Research Methods

adegenet:: a R package for the multivariate analysis of genetic markers

Thibaut Jombart

BIOINFORMATICS (2008)

Article Agronomy

Database derived microsatellite markers (SSRs) for cultivar differentiation in Brassica oleracea

S. Louarn et al.

GENETIC RESOURCES AND CROP EVOLUTION (2007)

Article Biochemical Research Methods

TASSEL: software for association mapping of complex traits in diverse samples

Peter J. Bradbury et al.

BIOINFORMATICS (2007)

Article Multidisciplinary Sciences

Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa

Jason P. Londo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research

R Peakall et al.

MOLECULAR ECOLOGY NOTES (2006)

Article Biochemical Research Methods

PowerMarker: an integrated analysis environment for genetic marker analysis

KJ Liu et al.

BIOINFORMATICS (2005)

Article Agronomy

An applied fingerprinting system for cultivated potato using simple sequence repeats

JJ Coombs et al.

AMERICAN JOURNAL OF POTATO RESEARCH (2004)