4.7 Article

Genomic selection in algae with biphasic lifecycles: A Saccharina latissima (sugar kelp) case study

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Genome-wide association analysis reveals new insights into the genetic architecture of defensive, agro-morphological and quality-related traits in cassava

Ismail Yusuf Rabbi et al.

Summary: More than 40 QTLs associated with stress-related, quality, and agronomic traits were identified through a genome-wide association study in cassava. Catalogue of SNP markers and candidate genes were provided, allowing acceleration of genetic progress in cassava breeding programs.

PLANT MOLECULAR BIOLOGY (2022)

Article Genetics & Heredity

Simulation of sugar kelp (Saccharina latissima) breeding guided by practices to accelerate genetic gains

Mao Huang et al.

Summary: This study assesses the obstacles for genetic gain in sugar kelp and identifies key factors for improving genetic gain through simulation approaches. The researchers demonstrate the importance of inducing reproduction in farm-tested sporophytes and accelerating the growth of released gametophytes.

G3-GENES GENOMES GENETICS (2022)

Article Biotechnology & Applied Microbiology

Skinny kelp (Saccharina angustissima) provides valuable genetics for the biomass improvement of farmed sugar kelp (Saccharina latissima)

Yaoguang Li et al.

Summary: Saccharina latissima is a widely cultivated brown marine macroalgae species. To meet the needs of the mariculture industry, selecting and breeding sugar kelp suitable for offshore farming is necessary. The study found that crossbreeding sugar kelp with skinny kelp resulted in higher yields compared to pure sugar kelp.

JOURNAL OF APPLIED PHYCOLOGY (2022)

Article Biotechnology & Applied Microbiology

Prospects for upgrading by the European kelp sector

Sander van den Burg et al.

Summary: This paper evaluates how the European strategy for growing the kelp sector aligns with the dynamics of the current global kelp value chain, highlighting the divisions between the established kelp industry in Asia and the emerging high-value applications industry. In order to spur the European seaweed sector, it is suggested that closer collaboration between the European food sector and producers is needed to facilitate chain or intra-sectoral upgrading.

JOURNAL OF APPLIED PHYCOLOGY (2021)

Article Biotechnology & Applied Microbiology

The nitrogen bioextraction potential of nearshore Saccharina latissima cultivation and harvest in the Western Gulf of Maine

G. S. Grebe et al.

Summary: In-water remediation strategies, such as seaweed farming, have the potential to minimize the impact of excess nitrogen on marine ecosystems. However, understanding the spatial and temporal variability is crucial for successful implementation. Site-specific pilot studies are necessary before utilizing seaweed aquaculture as a tool for nitrogen bioextraction.

JOURNAL OF APPLIED PHYCOLOGY (2021)

Article Fisheries

Comparative analysis of morphometric traits of farmed sugar kelp and skinny kelp, Saccharina spp., strains from the Northwest Atlantic

Schery Umanzor et al.

Summary: The team initiated a selective breeding program for regional strains of sugar kelp and skinny kelp, demonstrating their interfertility through hybridization experiments. Morphological traits of offspring blades varied depending on parental contribution, while wet weight and blade density per plot showed no statistical differences regardless of the cross. The findings suggest that S. angustissima and S. latissima may not be different species and could each contribute genetic diversity to breeding programs for ocean farming and market needs.

JOURNAL OF THE WORLD AQUACULTURE SOCIETY (2021)

Article Multidisciplinary Sciences

Red seaweed (Asparagopsis taxiformis) supplementation reduces enteric methane by over 80 percent in beef steers

Breanna M. Roque et al.

Summary: The study demonstrates that supplementing A. taxiformis can significantly reduce CH4 emissions from ruminant animals and potentially increase production efficiency.

PLOS ONE (2021)

Article Biochemistry & Molecular Biology

Genome-Wide Mapping of Cytosine Methylation Revealed Dynamic DNA Methylation Patterns Associated with Sporophyte Development of Saccharina japonica

Xiaoqi Yang et al.

Summary: This study investigated the DNA methylation in Saccharina japonica sporophyte, revealing low total methylation levels with dominance of CHH contexts. The DNA methylation was found to be involved in cell motility, cycle, and cell wall/membrane biogenesis during sporophyte development. Further analysis indicated specific methylation patterns among different parts of the sporophyte, suggesting a role of epigenetic regulation in brown macroalgae development.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2021)

Article Plant Sciences

Scalable Sparse Testing Genomic Selection Strategy for Early Yield Testing Stage

Sikiru Adeniyi Atanda et al.

Summary: The study explored optimal approaches to incorporate genotype by environment interaction in genomic prediction models for scalable sparse testing genomic selection strategy. Results showed that grouping environments and complementing the calibration set with optimized historical data improved prediction accuracy in the cross-validation schemes.

FRONTIERS IN PLANT SCIENCE (2021)

Article Plant Sciences

Combining Partially Overlapping Multi-Omics Data in Databases Using Relationship Matrices

Deniz Akdemir et al.

FRONTIERS IN PLANT SCIENCE (2020)

Article Green & Sustainable Science & Technology

Improving gaseous biofuel yield from seaweed through a cascading circular bioenergy system integrating anaerobic digestion and pyrolysis

Chen Deng et al.

RENEWABLE & SUSTAINABLE ENERGY REVIEWS (2020)

Article Environmental Sciences

Population Genetics of Sugar Kelp Throughout the Northeastern United States Genome-Wide Markers

Xiaowei Mao et al.

FRONTIERS IN MARINE SCIENCE (2020)

Article Veterinary Sciences

Key Considerations for the Use of Seaweed to Reduce Enteric Methane Emissions From Cattle

Sandra Vijn et al.

FRONTIERS IN VETERINARY SCIENCE (2020)

Article Genetics & Heredity

Genomic Selection for Yield and Seed Composition Traits Within an Applied Soybean Breeding Program

Benjamin B. Stewart-Brown et al.

G3-GENES GENOMES GENETICS (2019)

Article Biotechnology & Applied Microbiology

Polar lipid profile of Saccharina latissima, a functional food from the sea

Felisa Rey et al.

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2019)

Article Biotechnology & Applied Microbiology

Fermentation of sugar kelp (Saccharina latissima)-effects on sensory properties, and content of minerals and metals

Annette Bruhn et al.

JOURNAL OF APPLIED PHYCOLOGY (2019)

Editorial Material Agronomy

Introduction to a Special Issue on Genotype by Environment Interaction

Natalia de Leon et al.

CROP SCIENCE (2016)

Article Agronomy

Genomic selection across multiple breeding cycles in applied bread wheat breeding

Sebastian Michel et al.

THEORETICAL AND APPLIED GENETICS (2016)

Article Agronomy

Genomic selection for wheat traits and trait stability

Mao Huang et al.

THEORETICAL AND APPLIED GENETICS (2016)

Review Biotechnology & Applied Microbiology

Mariculture of the Asian kelp Undaria pinnatifida and the native kelp Saccharina latissima along the Atlantic coast of Southern Europe: An overview

Cesar Peteiro et al.

ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS (2016)

Article Multidisciplinary Sciences

On the Accuracy of Genomic Selection

Charles-Elie Rabier et al.

PLOS ONE (2016)

Review Agricultural Engineering

The cultivation of European kelp for bioenergy: Site and species selection

Philip D. Kerrison et al.

BIOMASS & BIOENERGY (2015)

Article Biotechnology & Applied Microbiology

Commercial cultivation and bioremediation potential of sugar kelp, Saccharina latissima, in Danish waters

Goncalo S. Marinho et al.

JOURNAL OF APPLIED PHYCOLOGY (2015)

Review Genetics & Heredity

Cryptic genetic variation: evolution's hidden substrate

Annalise B. Paaby et al.

NATURE REVIEWS GENETICS (2014)

Article Agronomy

A reaction norm model for genomic selection using high-dimensional genomic and environmental data

Diego Jarquin et al.

THEORETICAL AND APPLIED GENETICS (2014)

Article Agronomy

Genomic Selection in Plant Breeding: A Comparison of Models

Nicolas Heslot et al.

CROP SCIENCE (2012)

Article Agronomy

Accuracy of genomic selection in European maize elite breeding populations

Yusheng Zhao et al.

THEORETICAL AND APPLIED GENETICS (2012)

Article Genetics & Heredity

Effectiveness of Genomic Prediction of Maize Hybrid Performance in Different Breeding Populations and Environments

Vanessa S. Windhausen et al.

G3-GENES GENOMES GENETICS (2012)

Article Genetics & Heredity

Shrinkage Estimation of the Realized Relationship Matrix

Jeffrey B. Endelman et al.

G3-GENES GENOMES GENETICS (2012)

Article Biochemical Research Methods

Improving SNP discovery by base alignment quality

Heng Li

BIOINFORMATICS (2011)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Biotechnology & Applied Microbiology

Genomic selection in plant breeding: from theory to practice

Jean-Luc Jannink et al.

BRIEFINGS IN FUNCTIONAL GENOMICS (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Zoology

Functional properties of the isomorphic biphasic algal life cycle

Carol S. Thornber

INTEGRATIVE AND COMPARATIVE BIOLOGY (2006)

Article Evolutionary Biology

A molecular timescale of eukaryote evolution and the rise of complex multicellular life

SB Hedges et al.

BMC EVOLUTIONARY BIOLOGY (2004)

Review Genetics & Heredity

Genomic imprinting: Parental influence on the genome

W Reik et al.

NATURE REVIEWS GENETICS (2001)