相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Diversification of a Fucosyllactose Transporter within the Genus Bifidobacterium
Miriam N. Ojima et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2022)
Selective induction of human gut-associated acetogenic/butyrogenic microbiota based on specific microbial colonization of indigestible starch granules
Yusuke Nagara et al.
ISME JOURNAL (2022)
The carbohydrate-active enzyme database: functions and literature
Elodie Drula et al.
NUCLEIC ACIDS RESEARCH (2022)
Comparative genomic analysis revealed genetic divergence between Bifidobacterium catenulatum subspecies present in infant versus adult guts
Jiaqi Liu et al.
BMC MICROBIOLOGY (2022)
A distinct clade of Bifidobacterium longum in the gut of Bangladeshi children thrives during weaning
Tommi Vatanen et al.
CELL (2022)
clinker & clustermap.js: automatic generation of gene cluster comparison figures
Cameron L. M. Gilchrist et al.
BIOINFORMATICS (2021)
Key bacterial taxa and metabolic pathways affecting gut short-chain fatty acid profiles in early life
Naoki Tsukuda et al.
ISME JOURNAL (2021)
Phylogenomic disentangling of the Bifidobacterium longum subsp. infantis taxon
Chiara Tarracchini et al.
MICROBIAL GENOMICS (2021)
Xylan utilisation promotes adaptation of Bifidobacterium pseudocatenulatum to the human gastrointestinal tract
Mar Benavides et al.
ISME COMMUNICATIONS (2021)
Varied Pathways of Infant Gut-Associated Bifidobacterium to Assimilate Human Milk Oligosaccharides: Prevalence of the Gene Set and Its Correlation with Bifidobacteria-Rich Microbiota Formation
Mikiyasu Sakanaka et al.
NUTRIENTS (2020)
The presence of resistant starch-degrading amylases in Bifidobacterium adolescentis of the human gut
Dong-Hyun Jung et al.
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES (2020)
Multiple Transporters and Glycoside Hydrolases Are Involved in Arabinoxylan-Derived Oligosaccharide Utilization in Bifidobacterium pseudocatenulatum
Yuki Saito et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2020)
Comparative Genome Analysis of Bifidobacterium longum subsp. infantis Strains Reveals Variation in Human Milk Oligosaccharide Utilization Genes among Commercial Probiotics
Rebbeca M. Duar et al.
NUTRIENTS (2020)
In Love with Shaping You-Influential Factors on the Breast Milk Content of Human Milk Oligosaccharides and Their Decisive Roles for Neonatal Development
Christian Hundshammer et al.
NUTRIENTS (2020)
New insights from uncultivated genomes of the global human gut microbiome
Stephen Nayfach et al.
NATURE (2019)
Mechanisms by which sialylated milk oligosaccharides impact bone biology in a gnotobiotic mouse model of infant undernutrition
Carrie A. Cowardin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research
M. Poyet et al.
NATURE MEDICINE (2019)
Effects of microbiota-directed foods in gnotobiotic animals and undernourished children
Jeanette L. Gehrig et al.
SCIENCE (2019)
A sparse covarying unit that describes healthy and impaired human gut microbiota development
Arjun S. Raman et al.
SCIENCE (2019)
Evolutionary adaptation in fucosyllactose uptake systems supports bifidobacteria-infant symbiosis
Mikiyasu Sakanaka et al.
SCIENCE ADVANCES (2019)
Metabolism of the predominant human milk oligosaccharide fucosyllactose by an infant gut commensal
Kieran James et al.
SCIENTIFIC REPORTS (2019)
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Edoardo Pasolli et al.
CELL (2019)
Improved metagenomic analysis with Kraken 2
Derrick E. Wood et al.
GENOME BIOLOGY (2019)
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
Han Zhang et al.
NUCLEIC ACIDS RESEARCH (2018)
Genomic diversity and distribution of Bifidobacterium longum subsp longum across the human lifespan
Toshitaka Odamaki et al.
SCIENTIFIC REPORTS (2018)
Comparative genomics and genotype-phenotype associations in Bifidobacterium breve
Francesca Bottacini et al.
SCIENTIFIC REPORTS (2018)
Differential bacterial capture and transport preferences facilitate co-growth on dietary xylan in the human gut
Maria Louise Leth et al.
NATURE MICROBIOLOGY (2018)
Genome-Based Taxonomic Classification of the Phylum Actinobacteria
Imen Nouioui et al.
FRONTIERS IN MICROBIOLOGY (2018)
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Ryan R. Wick et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission
Sabrina Duranti et al.
MICROBIOME (2017)
Quantification, isolation and characterization of Bifidobacterium from the vaginal microbiomes of reproductive aged women
Aline C. Freitas et al.
ANAEROBE (2017)
Age-Related Changes in the Composition of Gut Bifidobacterium Species
Kumiko Kato et al.
CURRENT MICROBIOLOGY (2017)
Bracken: estimating species abundance in metagenomics data
Jennifer Lu et al.
PEERJ COMPUTER SCIENCE (2017)
Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens
Leighton Pritchard et al.
ANALYTICAL METHODS (2016)
Fucosyllactose and L-fucose utilization of infant Bifidobacterium longum and Bifidobacterium kashiwanohense
Vera Bunesova et al.
BMC MICROBIOLOGY (2016)
BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
Minoru Kanehisa et al.
JOURNAL OF MOLECULAR BIOLOGY (2016)
A key genetic factor for fucosyllactose utilization affects infant gut microbiota development
Takahiro Matsuki et al.
NATURE COMMUNICATIONS (2016)
Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis
Sabrina Duranti et al.
SCIENTIFIC REPORTS (2016)
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
BIOINFORMATICS (2015)
Complete genome sequence of Bifidobacterium catenulatum JCM 1194T isolated from human feces
Hidetoshi Moritaa et al.
JOURNAL OF BIOTECHNOLOGY (2015)
Dynamics of Infant Gut Microbiota Are Influenced by Delivery Mode and Gestational Duration and Are Associated with Subsequent Adiposity
Shaillay Dogra et al.
MBIO (2015)
Glycan complexity dictates microbial resource allocation in the large intestine
Artur Rogowski et al.
NATURE COMMUNICATIONS (2015)
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
David Coil et al.
BIOINFORMATICS (2015)
Bifidobacterium Iongum subspecies infantis: champion colonizer of the infant gut
Mark A. Underwood et al.
PEDIATRIC RESEARCH (2015)
Complete and Assembled Genome Sequence of Bifidobacterium kashiwanohense PV20-2, Isolated from the Feces of an Anemic Kenyan Infant
Pamela Vazquez-Gutierrez et al.
GENOME ANNOUNCEMENTS (2015)
The Ability of Bifidobacteria To Degrade Arabinoxylan Oligosaccharide Constituents and Derived Oligosaccharides Is Strain Dependent
Audrey Riviere et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
Genomic Characterization and Transcriptional Studies of the Starch-Utilizing Strain Bifidobacterium adolescentis 22L
Sabrina Duranti et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Data, information, knowledge and principle: back to metabolism in KEGG
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2014)
Kraken: ultrafast metagenomic sequence classification using exact alignments
Derrick E. Wood et al.
GENOME BIOLOGY (2014)
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
Yanbin Yin et al.
NUCLEIC ACIDS RESEARCH (2012)
Characterization of two β-xylosidases from Bifidobacterium adolescentis and their contribution to the hydrolysis of prebiotic xylooligosaccharides
Stijn Lagaert et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2011)
Bifidobacterium kashiwanohense sp nov., isolated from healthy infant faeces
Hidetoshi Morita et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)
Bifidobacteria can protect from enteropathogenic infection through production of acetate
Shinji Fukuda et al.
NATURE (2011)
Substrate specificity of three recombinant α-L-arabinofuranosidases from Bifidobacterium adolescentis and their divergent action on arabinoxylan and arabinoxylan oligosaccharides
Stijn Lagaert et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
Energy constraints on the evolution of gene expression
A Wagner
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Molecular cloning and characterization of Bifidobacterium bifidum 1,2-α-L-fucosidase (AfcA), a novel inverting glycosidase (Glycoside hydrolase family 95)
T Katayama et al.
JOURNAL OF BACTERIOLOGY (2004)
Mauve: Multiple alignment of conserved genomic sequence with rearrangements
ACE Darling et al.
GENOME RESEARCH (2004)
Differences in fecal microflora between patients with atopic dermatitis and healthy control subjects
S Watanabe et al.
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY (2003)
Allergy development and the intestinal microflora during the first year of life
B Björkstén et al.
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY (2001)
Distinct patterns of neonatal gut microflora in infants in whom atopy was and was not developing
M Kalliomaki et al.
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY (2001)
分享论文
