The complete chloroplast genome and phylogenetic analysis of Stewartia sichuanensis (Theaceae), a Chinese endemic tree with narrow distribution

Article Biochemistry & Molecular Biology

CPGView: A package for visualizing detailed chloroplast genome structures

Shengyu Liu et al.

Summary: CPGView is a software package that can draw distribution maps of chloroplast genomes and identify annotation errors. It can draw maps of genes, variable sites, and repetitive sequences, adjust exon-intron boundary positions, and plot the structure of specific genes. The software has shown high accuracy and reliability in testing and will become an important tool for studying chloroplast genome structure.

MOLECULAR ECOLOGY RESOURCES (2023)

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Article Plant Sciences

Phylotranscriptomics of Theaceae: generic-level relationships, reticulation and whole-genome duplication

Qiong Zhang et al.

Summary: This study used transcriptomes or low-depth whole-genome sequencing data from 57 species of Theaceae, along with additional plastome sequence data, to investigate phylogenetic relationships at both tribal and generic levels. The study also inferred possible whole-genome duplication events and identified potential hybridization events among species within the family. The results of the study improved our understanding of phylogenetic relationships within Theaceae and highlighted the importance of low-copy nuclear genes in phylogenetic analyses.

ANNALS OF BOTANY (2022)

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Article Biochemistry & Molecular Biology