相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Identification of runs of homozygosity in Western honey bees (Apis mellifera) using whole-genome sequencing data
Annik Imogen Gmel et al.
ECOLOGY AND EVOLUTION (2023)
f-Statistics estimation and admixture graph construction with Pool-Seq or allele count data using the R package poolfstat
Mathieu Gautier et al.
MOLECULAR ECOLOGY RESOURCES (2022)
Properties and unbiased estimation of F- and D-statistics in samples containing related and inbred individuals
Mehreen R. Mughal et al.
GENETICS (2022)
Reconstructing queen genotypes by pool sequencing colonies in eusocial insects: Statistical Methods and their application to honeybee
Sonia E. Eynard et al.
MOLECULAR ECOLOGY RESOURCES (2022)
Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations
Linnea Smeds et al.
EVOLUTIONARY APPLICATIONS (2021)
The Buzz Changes within Time: Native Apis mellifera mellifera Honeybee Subspecies Less and Less Popular among Polish Beekeepers Since 1980
Malgorzata Bienkowska et al.
AGRICULTURE-BASEL (2021)
History of the displacement of the European dark bee (Apis mellifera mellifera) in Denmark
Maja Gry Nielsdatter et al.
JOURNAL OF APICULTURAL RESEARCH (2021)
Dsuite - Fast D-statistics and related admixture evidence from VCF files
Milan Malinsky et al.
MOLECULAR ECOLOGY RESOURCES (2021)
Comparative Performance of Popular Methods for Hybrid Detection using Genomic Data
Sungsik Kong et al.
SYSTEMATIC BIOLOGY (2021)
Twelve years of SAMtools and BCFtools
Petr Danecek et al.
GIGASCIENCE (2021)
Thrice out of Asia and the adaptive radiation of the western honey bee
Kathleen A. Dogantzis et al.
SCIENCE ADVANCES (2021)
One town's invasion by the pest slug Arion vulgaris (Gastropoda: Arionidae): microsatellites reveal little introgression from Arion ater and limited gene flow between infraspecific races in both species
John M. C. Hutchinson et al.
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2021)
Introgression between Sphyrapicus nuchalis and S. varius sapsuckers in a hybrid zone in west-central Alberta
Libby Natola et al.
JOURNAL OF AVIAN BIOLOGY (2021)
Whole genome sequencing reveals a complex introgression history and the basis of adaptation to subarctic climate in wild sheep
Maulik Upadhyay et al.
MOLECULAR ECOLOGY (2021)
Wide genetic diversity in Old World honey bees threaten by introgression
Irene Munoz et al.
APIDOLOGIE (2021)
Adaptive introgression from indicine cattle into white cattle breeds from Central Italy
Mario Barbato et al.
SCIENTIFIC REPORTS (2020)
Comparative study of population genomic approaches for mapping colony-level traits
Shani Inbar et al.
PLoS Computational Biology (2020)
A revision of subspecies structure of western honey bee Apis mellifera
Rustem A. Ilyasov et al.
SAUDI JOURNAL OF BIOLOGICAL SCIENCES (2020)
Applyingf4-statistics and admixture graphs: Theory and examples
Mark Lipson
MOLECULAR ECOLOGY RESOURCES (2020)
Genomic regions influencing aggressive behavior in honey bees are defined by colony allele frequencies
Arian Avalos et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Introgression Among Three Western North American Bilberries (Vaccinium section Myrtillus)
Reese B. Beeler et al.
SYSTEMATIC BOTANY (2020)
Mitochondrial genomes illuminate the evolutionary history of the Western honey bee (Apis mellifera)
Erik Tihelka et al.
SCIENTIFIC REPORTS (2020)
Advances and perspectives in selecting resistance traits against the parasitic mite Varroa destructor in honey bees
Matthieu Guichard et al.
GENETICS SELECTION EVOLUTION (2020)
Recombination rate variation shapes barriers to introgression across butterfly genomes
Simon H. Martin et al.
PLOS BIOLOGY (2019)
Adaptive Introgression: An Untapped Evolutionary Mechanism for Crop Adaptation
Concetta Burgarella et al.
FRONTIERS IN PLANT SCIENCE (2019)
The Conservation of Native Honey Bees Is Crucial
Fabrice Requier et al.
TRENDS IN ECOLOGY & EVOLUTION (2019)
How to optimize the precision of allele and haplotype frequency estimates using pooled-sequencing data
Nicolas O. Rode et al.
MOLECULAR ECOLOGY RESOURCES (2018)
Developing reduced SNP assays from whole-genome sequence data to estimate introgression in an organism with complex genetic patterns, the Iberian honeybee (Apis mellifera iberiensis)
Dora Henriques et al.
EVOLUTIONARY APPLICATIONS (2018)
A significant pure population of the dark European honey bee (Apis mellifera mellifera) remains in Ireland
Jack Hassett et al.
JOURNAL OF APICULTURAL RESEARCH (2018)
Introgression in native populations of Apis mellifera mellifera L: implications for conservation
Jonathan S. Ellis et al.
JOURNAL OF INSECT CONSERVATION (2018)
Population Genomics Provide Insights into the Evolution and Adaptation of the Eastern Honey Bee (Apis cerana)
Chao Chen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists
Shannon J. O'Leary et al.
MOLECULAR ECOLOGY (2018)
High sample throughput genotyping for estimating C-lineage introgression in the dark honeybee: an accurate and cost-effective SNP-based tool
Dora Henriques et al.
SCIENTIFIC REPORTS (2018)
Empirical comparison of microsatellite and SNP markers to estimate introgression in Apis mellifera mellifera
Melanie Parejo et al.
JOURNAL OF APICULTURAL RESEARCH (2018)
A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots
Daniel J. Lawson et al.
NATURE COMMUNICATIONS (2018)
Characterisation of the British honey bee metagenome
Tim Regan et al.
NATURE COMMUNICATIONS (2018)
Slow motion extinction: inbreeding, introgression, and loss in the critically endangered mangrove finch (Camarhynchus heliobates)
Lucinda P. Lawson et al.
CONSERVATION GENETICS (2017)
Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation
David B. Lowry et al.
MOLECULAR ECOLOGY RESOURCES (2017)
SNPs selected by information content outperform randomly selected microsatellite loci for delineating genetic identification and introgression in the endangered dark European honeybee (Apis mellifera mellifera)
Irene Munoz et al.
MOLECULAR ECOLOGY RESOURCES (2017)
The Complex Demographic History and Evolutionary Origin of the Western Honey Bee, Apis Mellifera
Julie M. Cridland et al.
GENOME BIOLOGY AND EVOLUTION (2017)
Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly
David Wragg et al.
SCIENTIFIC REPORTS (2016)
Using Whole-Genome Sequence Information to Foster Conservation Efforts for the European Dark Honey Bee, Apis mellifera mellifera
Melanie Parejo et al.
FRONTIERS IN ECOLOGY AND EVOLUTION (2016)
Introgression of mitochondrial DNA among lineages in a hybridogenetic ant
Hugo Darras et al.
BIOLOGY LETTERS (2015)
Functional Organization of the Genome May Shape the Species Boundary in the House Mouse
Vaclav Janousek et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Causes and consequences of crossing-over evidenced via a high-resolution recombinational landscape of the honey bee
Haoxuan Liu et al.
GENOME BIOLOGY (2015)
Evaluating the Use of ABBA-BABA Statistics to Locate Introgressed Loci
Simon H. Martin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Reduced SNP Panels for Genetic Identification and Introgression Analysis in the Dark Honey Bee (Apis mellifera mellifera)
Irene Munoz et al.
PLOS ONE (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Genetic integrity of the Dark European honey bee (Apis mellifera mellifera) from protected populations: a genome-wide assessment using SNPs and mtDNA sequence data
M. Alice Pinto et al.
JOURNAL OF APICULTURAL RESEARCH (2014)
Next-generation sequencing for molecular ecology: a caveat regarding pooled samples
Eric C. Anderson et al.
MOLECULAR ECOLOGY (2014)
A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera
Andreas Wallberg et al.
NATURE GENETICS (2014)
Genome sequencing and population genomics in non-model organisms
Hans Ellegren
TRENDS IN ECOLOGY & EVOLUTION (2014)
Standard methods for characterising subspecies and ecotypes of Apis mellifera
Marina D. Meixner et al.
JOURNAL OF APICULTURAL RESEARCH (2013)
Efficient Moment-Based Inference of Admixture Parameters and Sources of Gene Flow
Mark Lipson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping
Mathieu Gautier et al.
MOLECULAR ECOLOGY (2013)
Stacks: an analysis tool set for population genomics
Julian Catchen et al.
MOLECULAR ECOLOGY (2013)
Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation
Philip W. Hedrick
MOLECULAR ECOLOGY (2013)
Ancient Admixture in Human History
Nick Patterson et al.
GENETICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
Brant K. Peterson et al.
PLOS ONE (2012)
Both geometric morphometric and microsatellite data consistently support the differentiation of the Apis mellifera M evolutionary branch
Irati Miguel et al.
APIDOLOGIE (2011)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Predicting the Probability of Outbreeding Depression
Richard Frankham et al.
CONSERVATION BIOLOGY (2011)
The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure
S. T. Kalinowski
HEREDITY (2011)
Testing for Ancient Admixture between Closely Related Populations
Eric Y. Durand et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Fast and accurate long-read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2010)
To Pool, or Not to Pool?
David J. Cutler et al.
GENETICS (2010)
A historical review of managed honey bee populations in Europe and the United States and the factors that may affect them
Dennis vanEngelsdorp et al.
JOURNAL OF INVERTEBRATE PATHOLOGY (2010)
Genetic history of an archaic hominin group from Denisova Cave in Siberia
David Reich et al.
NATURE (2010)
A Draft Sequence of the Neandertal Genome
Richard E. Green et al.
SCIENCE (2010)
Biodiversity, conservation and current threats to European honeybees
Pilar De la Rua et al.
APIDOLOGIE (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast model-based estimation of ancestry in unrelated individuals
David H. Alexander et al.
GENOME RESEARCH (2009)
Gene tree discordance, phylogenetic inference and the multispecies coalescent
James H. Degnan et al.
TRENDS IN ECOLOGY & EVOLUTION (2009)
The influence of family groups on inferences made with the program Structure
E. C. Anderson et al.
MOLECULAR ECOLOGY RESOURCES (2008)
PLINK: A tool set for whole-genome association and population-based linkage analyses
Shaun Purcell et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2007)
Genetic characterization of Italian honeybees, Apis mellifera ligustica, based on microsatellite DNA polymorphisms
Raffaele Dall'Olio et al.
APIDOLOGIE (2007)
Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting:: An example from Melanoplus grasshoppers
Bryan C. Carstens et al.
SYSTEMATIC BIOLOGY (2007)
Exceptionally high levels of recombination across the honey bee genome
Martin Beye et al.
GENOME RESEARCH (2006)
Varying degrees of Apis mellifera ligustica introgression in protected populations of the black honeybee, Apis mellifera mellifera, in northwest Europe
AB Jensen et al.
MOLECULAR ECOLOGY (2005)
Genetic diversity of the honeybee in Africa: microsatellite and mitochondrial data
P Franck et al.
HEREDITY (2001)
The evolution of cooperative and pair breeding in thornbills Acanthiza (Pardalotidae)
JA Nicholls et al.
JOURNAL OF AVIAN BIOLOGY (2000)
分享论文
