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Daniel B. Graham et al.
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Enrico Longato et al.
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Scott M. Lundberg et al.
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Anja van de Stolpe et al.
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Marcelo P. Segura-Lepe et al.
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Yufeng Sun et al.
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Damian Szklarczyk et al.
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James C. Mathews et al.
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Xiujuan Lei et al.
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Alberto Fernandez et al.
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Identifying miRNA and gene modules of colon cancer associated with pathological stage by weighted gene co-expression network analysis
Xian-guo Zhou et al.
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Marie-Claire Wagle et al.
NPJ PRECISION ONCOLOGY (2018)
MIDAS: Mining differentially activated subpaths of KEGG pathways from multi-class RNA-seq data
Sangseon Lee et al.
METHODS (2017)
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Yvette Temate-Tiagueu et al.
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Cancer Statistics, 2016
Rebecca L. Siegel et al.
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Justin Guinney et al.
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Katarzyna Tomczak et al.
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Lingjian Yang et al.
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P. Chen et al.
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Sijia Huang et al.
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Ozlem Yersal et al.
WORLD JOURNAL OF CLINICAL ONCOLOGY (2014)
GSVA: gene set variation analysis for microarray and RNA-Seq data
Sonja Haenzelmann et al.
BMC BIOINFORMATICS (2013)
Gene expression patterns unveil a new level of molecular heterogeneity in colorectal cancer
Eva Budinska et al.
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Pathway-based personalized analysis of cancer
Yotam Drier et al.
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Core module biomarker identification with network exploration for breast cancer metastasis
Ruoting Yang et al.
BMC BIOINFORMATICS (2012)
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Ke-Qin Liu et al.
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Guido Cavaletti et al.
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Joel S. Parker et al.
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Xi Chen et al.
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RANDOM SURVIVAL FORESTS
Hemant Ishwaran et al.
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Alcohol dehydrogenase (ADH) and aldehyde dehydrogenase (ALDH) in the cancer diseases
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Melissa S. Cline et al.
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AH Bild et al.
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Iterative MILP methods for vehicle-control problems
MG Earl et al.
IEEE TRANSACTIONS ON ROBOTICS (2005)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
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Z Guo et al.
BMC BIOINFORMATICS (2005)
Bioluminescence imaging of individual fibroblasts reveals persistent, independently phased circadian rhythms of clock gene expression
DK Welsh et al.
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The KEGG resource for deciphering the genome
M Kanehisa et al.
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Diagnostic, prognostic and therapeutic implications of carbonic anhydrases in cancer
CPS Potter et al.
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Low penetrance genes associated with increased risk for breast cancer
BL Weber et al.
EUROPEAN JOURNAL OF CANCER (2000)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)