相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Genome-wide virus-integration analysis reveals a common insertional mechanism of HPV, HBV and EBV
Rui Tian et al.
CLINICAL AND TRANSLATIONAL MEDICINE (2022)
DeepHPV: a deep learning model to predict human papillomavirus integration sites
Rui Tian et al.
BRIEFINGS IN BIOINFORMATICS (2021)
Human Papillomavirus Prevalence and Integration Status in Tissue Samples of Bladder Cancer in the Chinese Population
Yongji Yan et al.
JOURNAL OF INFECTIOUS DISEASES (2021)
DeepEBV: a deep learning model to predict Epstein-Barr virus (EBV) integration sites
Jiuxing Liang et al.
BIOINFORMATICS (2021)
DeepHBV: a deep learning model to predict hepatitis B virus (HBV) integration sites
Canbiao Wu et al.
BMC ECOLOGY AND EVOLUTION (2021)
VISDB: a manually curated database of viral integration sites in the human genome
Deyou Tang et al.
NUCLEIC ACIDS RESEARCH (2020)
Detecting virus integration sites based on multiple related sequencing data by VirTect
Yuchao Xia et al.
BMC MEDICAL GENOMICS (2019)
A virome-wide clonal integration analysis platform for discovering cancer viral etiology
Xun Chen et al.
GENOME RESEARCH (2019)
TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration
Sonja Lagstrom et al.
SCIENTIFIC REPORTS (2019)
Whole genome sequencing reveals complexity in both HPV sequences present and HPV integrations in HPV-positive oropharyngeal squamous cell carcinomas
Ge Gao et al.
BMC CANCER (2019)
Genome-wide profiling of Epstein-Barr virus integration by targeted sequencing in Epstein-Barr virus associated malignancies
Miao Xu et al.
THERANOSTICS (2019)
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen et al.
BIOINFORMATICS (2018)
ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer
Nam-Phuong D. Nguyen et al.
NUCLEIC ACIDS RESEARCH (2018)
Characterization of HBV integration patterns and timing in liver cancer and HBV-infected livers
Mayuko Furuta et al.
Oncotarget (2018)
Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma
Liu Yang et al.
JOURNAL OF CANCER (2018)
Cancer Progression Goes Viral: The Role of Oncoviruses in Aggressiveness of Malignancies
Barbara Grasiele Mueller-Coan et al.
TRENDS IN CANCER (2018)
Long-distance interaction of the integrated HPV fragment with MYC gene and 8q24.22 region upregulating the allele-specific MYC expression in HeLa cells
Congle Shen et al.
INTERNATIONAL JOURNAL OF CANCER (2017)
How viral genetic variants and genotypes influence disease and treatment outcome of chronic hepatitis B. Time for an individualised approach?
Neil Rajoriya et al.
JOURNAL OF HEPATOLOGY (2017)
Human oncogenic viruses: nature and discovery
Yuan Chang et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)
HBV DNA Integration: Molecular Mechanisms and Clinical Implications
Thomas Tu et al.
VIRUSES-BASEL (2017)
BS-virus-finder: virus integration calling using bisulfite sequencing data
Shengjie Gao et al.
GIGASCIENCE (2017)
Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks
Dylan Z. Kelley et al.
CANCER RESEARCH (2017)
Assays for DNA double-strand break repair by microhomology-based end-joining repair mechanisms
Kaja Kostyrko et al.
NUCLEIC ACIDS RESEARCH (2016)
Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma
Ling-Hao Zhao et al.
NATURE COMMUNICATIONS (2016)
Genome-wide Analysis of Epstein-Barr Virus (EBV) Integration and Strain in C666-1 and Raji Cells
Kai Xiao et al.
JOURNAL OF CANCER (2016)
DNA methylation at hepatitis B viral integrants is associated with methylation at flanking human genomic sequences
Yoshiyuki Watanabe et al.
GENOME RESEARCH (2015)
Characterization of the genotype and integration patterns of hepatitis B virus in early- and late-onset hepatocellular carcinoma
Hongli Yan et al.
HEPATOLOGY (2015)
Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism
Zheng Hu et al.
NATURE GENETICS (2015)
Virus-Clip: a fast and memory-efficient viral integration site detection tool at single-base resolution with annotation capability
Daniel W. H. Ho et al.
ONCOTARGET (2015)
HPVbase - a knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas
Amit Kumar Gupta et al.
SCIENTIFIC REPORTS (2015)
Vy-PER: eliminating false positive detection of virus integration events in next generation sequencing data
Michael Forster et al.
SCIENTIFIC REPORTS (2015)
VERSE: a novel approach to detect virus integration in host genomes through reference genome customization
Qingguo Wang et al.
GENOME MEDICINE (2015)
Dr.VIS v2.0: an updated database of human disease-related viral integration sites in the era of high-throughput deep sequencing
Xiaobo Yang et al.
NUCLEIC ACIDS RESEARCH (2015)
Viral-Human Chimeric Transcript Predisposes Risk to Liver Cancer Development and Progression
Chi-Chiu Lau et al.
CANCER CELL (2014)
Characterization of HPV and host genome interactions in primary head and neck cancers
Michael a Parfenov et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Viral Carcinogenesis: Factors Inducing DNA Damage and Virus Integration
Yan Chen et al.
CANCERS (2014)
VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue
Yunxin Chen et al.
BIOINFORMATICS (2013)
ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution
Jing-Woei Li et al.
BIOINFORMATICS (2013)
HIVID: An efficient method to detect HBV integration using low coverage sequencing
Weiyang Li et al.
GENOMICS (2013)
VirusFinder: Software for Efficient and Accurate Detection of Viruses and Their Integration Sites in Host Genomes through Next Generation Sequencing Data
Qingguo Wang et al.
PLOS ONE (2013)
Sensitive Detection of Viral Transcripts in Human Tumor Transcriptomes
Sven-Eric Schelhorn et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Synthesis-dependent microhomology-mediated end joining accounts for multiple types of repair junctions
Amy Marie et al.
NUCLEIC ACIDS RESEARCH (2010)
Viruses associated with human cancer
Margaret E. McLaughlin-Drubin et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2008)
The role of hepatitis B virus integrations in the pathogenesis of human hepatocellular carcinoma
RB Guerrero et al.
JOURNAL OF HEPATOLOGY (2005)
分享论文
