相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Uncovering the enigmatic evolution of bears in greater depth: The hybrid origin of the Asiatic black bear
Tiantian Zou et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2022)
Population Genomics Reveals Incipient Speciation, Introgression, and Adaptation in the African Mona Monkey (Cercopithecus mona)
Adeola Oluwakemi Ayoola et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Dsuite - Fast D-statistics and related admixture evidence from VCF files
Milan Malinsky et al.
MOLECULAR ECOLOGY RESOURCES (2021)
Hybrid speciation via inheritance of alternate alleles of parental isolating genes
Zefu Wang et al.
MOLECULAR PLANT (2021)
Most Genomic Loci Misrepresent the Phylogeny of an Avian Radiation Because of Ancient Gene Flow
Dezhi Zhang et al.
SYSTEMATIC BIOLOGY (2021)
The evolution of primate coloration revisited
Tim Caro et al.
BEHAVIORAL ECOLOGY (2021)
Genome-wide analysis reveals signatures of complex introgressive gene flow in macaques (genus Macaca)
Yang Song et al.
ZOOLOGICAL RESEARCH (2021)
Fast and accurate long-read assembly with wtdbg2
Jue Ruan et al.
NATURE METHODS (2020)
Reduced meiotic recombination in rhesus macaques and the origin of the human recombination landscape
Cheng Xue et al.
PLOS ONE (2020)
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Emmanuel Paradis et al.
BIOINFORMATICS (2019)
The comparative genomics and complex population history of Papio baboons
Jeffrey Rogers et al.
SCIENCE ADVANCES (2019)
WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
Yuxing Liao et al.
NUCLEIC ACIDS RESEARCH (2019)
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
Lei Chen et al.
SCIENCE (2019)
The radiation of macaques out of Africa: Evidence from mitogenome divergence times and the fossil record
Christian Roos et al.
JOURNAL OF HUMAN EVOLUTION (2019)
Genomic architecture and introgression shape a butterfly radiation
Nathaniel B. Edelman et al.
SCIENCE (2019)
Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants
Yaoxi He et al.
NATURE COMMUNICATIONS (2019)
Rapid hybrid speciation in Darwin's finches
Sangeet Lamichhaney et al.
SCIENCE (2018)
Loter: A Software Package to Infer Local Ancestry for a Wide Range of Species
Thomas Dias-Alves et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Ancient hybridization and admixture in macaques (genus Macaca) inferred from whole genome sequences
Zhenxin Fan et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2018)
How the manakin got its crown: A novel trait that is unlikely to cause speciation
Gil G. Rosenthal et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
HyDe: A Python Package for Genome-Scale Hybridization Detection
Paul D. Blischak et al.
SYSTEMATIC BIOLOGY (2018)
Is homoploid hybrid speciation that rare? An empiricist's view
G. Nieto Feliner et al.
HEREDITY (2017)
Phylogenetic position of the white-cheeked macaque (Macaca leucogenys), a newly described primate from southeastern Tibet
Pengfei Fan et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2017)
HIV-1 can infect northern pig-tailed macaques (Macaca leonina) and form viral reservoirs in vivo
Wei Pang et al.
SCIENCE BULLETIN (2017)
Comment on Whole genome sequence analysis shows two endemic species of North American wolf are admixtures of the coyote and gray wolf
Paul A. Hohenlohe et al.
SCIENCE ADVANCES (2017)
The genomic mosaicism of hybrid speciation
Tore O. Elgvin et al.
SCIENCE ADVANCES (2017)
Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf
Bridgett M. vonHoldt et al.
SCIENCE ADVANCES (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
A maximum pseudo-likelihood approach for phylogenetic networks
Yun Yu et al.
BMC GENOMICS (2015)
Evaluating the Use of ABBA-BABA Statistics to Locate Introgressed Loci
Simon H. Martin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Extensive introgression in a malaria vector species complex revealed by phylogenomics
Michael C. Fontaine et al.
SCIENCE (2015)
ASTRAL: genome-scale coalescent-based species tree estimation
S. Mirarab et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
ANGSD: Analysis of Next Generation Sequencing Data
Thorfinn Sand Korneliussen et al.
BMC BIOINFORMATICS (2014)
Genomics and the origin of species
Ole Seehausen et al.
NATURE REVIEWS GENETICS (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Genome Sequencing Highlights the Dynamic Early History of Dogs
Adam H. Freedman et al.
PLOS GENETICS (2014)
The UCSC genome browser and associated tools
Robert M. Kuhn et al.
BRIEFINGS IN BIOINFORMATICS (2013)
PhyBin: binning trees by topology
Ryan R. Newton et al.
PEERJ (2013)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Ancient Admixture in Human History
Nick Patterson et al.
GENETICS (2012)
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
Robert Lanfear et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice
Michael W. Nachman et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
A novel hybrid gene prediction method employing protein multiple sequence alignments
Oliver Keller et al.
BIOINFORMATICS (2011)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
Sex Chromosome Mosaicism and Hybrid Speciation among Tiger Swallowtail Butterflies
Krushnamegh Kunte et al.
PLOS GENETICS (2011)
ASSORTATIVE MATING PREFERENCES AMONG HYBRIDS OFFERS A ROUTE TO HYBRID SPECIATION
Maria C. Melo et al.
EVOLUTION (2009)
genBlastA: Enabling BLAST to identify homologous gene sequences
Rong She et al.
GENOME RESEARCH (2009)
Sexual Skin Color Contains Information About the Timing of the Fertile Phase in Free-ranging Macaca mulatta
Constance Dubuc et al.
INTERNATIONAL JOURNAL OF PRIMATOLOGY (2009)
Estimating Species Phylogenies Using Coalescence Times among Sequences
Liang Liu et al.
SYSTEMATIC BIOLOGY (2009)
Macaque Models of Human Infectious Disease
Murray B. Gardner et al.
ILAR JOURNAL (2008)
Homoploid hybrid speciation in animals
Jesus Mavarez et al.
MOLECULAR ECOLOGY (2008)
A novel fusion gene, TRIMS-Cyclophilin A in the pig-tailed macaque determines its susceptibility to HIV-1 infection
Cheng-Hong Liao et al.
AIDS (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Mechanisms of sexual selection: Sexual swellings and estrogen concentrations as fertility indicators and cues for male consort decisions in wild baboons
Laurence R. Gesquiere et al.
HORMONES AND BEHAVIOR (2007)
Speciation by hybridization in Heliconius butterflies
Jesus Mavarez et al.
NATURE (2006)
Body size and proportions and pelage color of free-ranging Macaca mulatta from a zone of hybridization in northeastern Thailand
Yuzuru Hamada et al.
INTERNATIONAL JOURNAL OF PRIMATOLOGY (2006)
The ecological genetics of homoploid hybrid speciation
BL Gross et al.
JOURNAL OF HEREDITY (2005)
Aligning multiple genomic sequences with the threaded blockset aligner
M Blanchette et al.
GENOME RESEARCH (2004)
Hybridization and adaptive radiation
O Seehausen
TRENDS IN ECOLOGY & EVOLUTION (2004)
Specificity and regioselectivity of the conjugation of estradiol, estrone, and their catecholestrogen and methoxyestrogen metabolites by human uridine diphospho-glucuronosyltransferases expressed in endometrium
J Lépine et al.
JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM (2004)
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
WJ Kent et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Neogene marine transgressions, palaeogeography and biogeographic transitions on the Thai-Malay Peninsula
DS Woodruff
JOURNAL OF BIOGEOGRAPHY (2003)
Macaque evolution and dispersal in insular south-east Asia
C Abegg et al.
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2002)
分享论文
