Transcriptional activators in the early Drosophila embryo perform different kinetic roles

Combinatorial regulation of gene expression by transcription factors (TFs) may in part arise from kinetic syn-ergy-wherein TFs regulate different steps in the transcription cycle. Kinetic synergy requires that TFs play distinguishable kinetic roles. Here, we used live imaging to determine the kinetic roles of three TFs that acti-vate transcription in the Drosophila embryo-Zelda, Bicoid, and Stat92E-by introducing their binding sites into the even -skipped stripe 2 enhancer. These TFs influence different sets of kinetic parameters, and their influence can change over time. All three TFs increased the fraction of transcriptionally active nuclei; Zelda also shortened the first-passage time into transcription and regulated the interval between transcription events. Stat92E also increased the lifetimes of active transcription. Different TFs can therefore play distinct kinetic roles in activating the transcription. This has consequences for understanding the composition and flexibility of regulatory DNA sequences and the biochemical function of TFs. A record of this paper's trans-parent peer review process is included in the supplemental information.

Automated summary

Combinatorial regulation of gene expression by transcription factors involves the kinetic synergy, where TFs play distinct kinetic roles. In this study, live imaging was used to determine the kinetic roles of three TFs (Zelda, Bicoid, and Stat92E) in activating transcription in Drosophila embryos. These TFs influence different sets of kinetic parameters, and their influence can change over time. Understanding the kinetic roles of TFs is important for elucidating the composition and flexibility of regulatory DNA sequences and the biochemical function of TFs.