☆ 4.7 Review

Horizon scan of DNA-based methods for quality control and monitoring of herbal preparations

FRONTIERS IN PHARMACOLOGY (2023)

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Strategies for molecular authentication of herbal products: from experimental design to data analysis

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Summary: Molecular herbal authentication has become popular worldwide in the past decade. DNA-based methods, such as DNA barcoding and species-specific amplification, have been widely adopted for herbal identification. The development of next-generation sequencing (NGS) has significantly increased the throughput of sequencing and facilitated the collection and assembly of organelle genomes. NGS allows simultaneous sequencing of multiple reads, enabling the identification of multiple species from a single sample. This review provides an introduction to the use of DNA barcoding and genome skimming/shotgun metagenomics in herbal product authentication, and discusses important considerations in experimental design for NGS-based botanical identification.

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A Novel Analytical Droplet Digital PCR Method for Identification and Quantification of Raw Health Food Material Powder from Panax notoginseng

Ning Yu et al.

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HPLC-UV, Metabarcoding and Genome Skims of Botanical Dietary Supplements: A Case Study in Echinacea

Sara M. Handy et al.

Summary: The use of DNA-based methods for authentication of botanical dietary supplements has sparked vigorous debate, with comparisons to chemical methods and discussion of the strengths and weaknesses of each approach. Genome skimming has shown enhanced discriminatory capacity compared to traditional DNA barcoding methods, particularly in identifying closely related species within the Echinacea genus.

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Rapid authentication of the precious herb saffron by loop-mediated isothermal amplification (LAMP) based on internal transcribed spacer 2 (ITS2) sequence

Mingming Zhao et al.

SCIENTIFIC REPORTS (2016)

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Article Multidisciplinary Sciences

Applying high-resolution melting (HRM) technology to identify five commonly used Artemisia species

Ming Song et al.

SCIENTIFIC REPORTS (2016)

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Review Pharmacology & Pharmacy

Quality and safety of herbal medical products: regulation and the need for quality assurance along the value chains

Michael Heinrich

BRITISH JOURNAL OF CLINICAL PHARMACOLOGY (2015)

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Article Public, Environmental & Occupational Health

DNA Barcoding and Pharmacovigilance of Herbal Medicines

Hugo J. de Boer et al.

DRUG SAFETY (2015)

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Article Chemistry, Applied

Species identification and quantification in meat and meat products using droplet digital PCR (ddPCR)

C. Floren et al.

FOOD CHEMISTRY (2015)

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Article Biochemistry & Molecular Biology

Rapid and Sensitive Identification of the Herbal Tea Ingredient Taraxacum formosanum Using Loop-Mediated Isothermal Amplification

Guan-Hua Lai et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2015)

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Article Biochemical Research Methods

DNA extraction from plant food supplements: Influence of different pharmaceutical excipients

Joana Costa et al.

MOLECULAR AND CELLULAR PROBES (2015)

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Editorial Material Biochemical Research Methods

Successful test launch for nanopore sequencing

Nicholas J. Loman et al.

NATURE METHODS (2015)

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Article Multidisciplinary Sciences

Bar-HRM for Authentication of Plant-Based Medicines: Evaluation of Three Medicinal Products Derived from Acanthaceae Species

Maslin Osathanunkul et al.

PLOS ONE (2015)

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Letter Plant Sciences

Genome skimming for next-generation biodiversity analysis

Steven Dodsworth

TRENDS IN PLANT SCIENCE (2015)

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Article Multidisciplinary Sciences

Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM)

Megan L. Coghlan et al.

SCIENTIFIC REPORTS (2015)

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Review Microbiology

Rapid methods for the detection of foodborne bacterial pathogens: principles, applications, advantages and limitations

Jodi Woan-Fei Law et al.

FRONTIERS IN MICROBIOLOGY (2015)

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Review Pharmacology & Pharmacy

Herbal hepatotoxicity in traditional and modern medicine: actual key issues and new encouraging steps

Rolf Teschke et al.

FRONTIERS IN PHARMACOLOGY (2015)

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Article Medicine, Legal

Assessing product adulteration in natural health products for laxative yielding plants, Cassia, Senna, and Chamaecrista, in Southern India using DNA barcoding

Gopalakrishnan Saroja Seethapathy et al.

INTERNATIONAL JOURNAL OF LEGAL MEDICINE (2015)

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Article Biochemistry & Molecular Biology

Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods

J. Pinol et al.

MOLECULAR ECOLOGY RESOURCES (2015)

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Article Biochemistry & Molecular Biology

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

Gentile F. Ficetola et al.

MOLECULAR ECOLOGY RESOURCES (2015)

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Article Agronomy

LAMP assay and rapid sample preparation method for on-site detection of flavescence doree phytoplasma in grapevine

P. Kogovsek et al.

PLANT PATHOLOGY (2015)

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Article Multidisciplinary Sciences

Using DNA Metabarcoding to Identify the Floral Composition of Honey: A New Tool for Investigating Honey Bee Foraging Preferences

Jennifer Hawkins et al.

PLOS ONE (2015)

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Review Biochemical Research Methods

DNA barcoding of medicinal plant material for identification

Natascha Techen et al.

CURRENT OPINION IN BIOTECHNOLOGY (2014)

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Article Biotechnology & Applied Microbiology

Authentication of Ginkgo biloba herbal dietary supplements using DNA barcoding

Damon P. Little

GENOME (2014)

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Rapid and easy molecular authentication of medicinal plant Zingiber officinale Roscoe by loop-mediated isothermal amplification (LAMP)-based marker

Ahmad Chaudhary Anis et al.

Journal of Medicinal Plants Research (2014)

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Article Biochemistry & Molecular Biology

DNA barcode ITS2 coupled with high resolution melting (HRM) analysis for taxonomic identification of Sideritis species growing in Greece

Apostolos Kalivas et al.

MOLECULAR BIOLOGY REPORTS (2014)

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Article Biochemistry & Molecular Biology

A DNA mini-barcode for land plants

Damon P. Little

MOLECULAR ECOLOGY RESOURCES (2014)

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Article Multidisciplinary Sciences

Usage of Plant Food Supplements across Six European Countries: Findings from the PlantLIBRA Consumer Survey

Alicia Garcia-Alvarez et al.

PLOS ONE (2014)

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Article Multidisciplinary Sciences

Long livestock farming history and human landscape shaping revealed by lake sediment DNA

Charline Giguet-Covex et al.

NATURE COMMUNICATIONS (2014)

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Article Multidisciplinary Sciences

Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan

Xinwei Cheng et al.

SCIENTIFIC REPORTS (2014)

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Review Pharmacology & Pharmacy

The growing use of herbal medicines: issues relating to adverse reactions and challenges in monitoring safety

Martins Ekor

FRONTIERS IN PHARMACOLOGY (2014)

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Review Medicine, General & Internal

Adverse effects of herbal medicines: an overview of systematic reviews

Paul Posadzki et al.

CLINICAL MEDICINE (2013)

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Article Chemistry, Applied

Application of novel loop-mediated isothermal amplification (LAMP) for rapid authentication of the herbal tea ingredient Hedyotis diffusa Willd.

Ming Li et al.

FOOD CHEMISTRY (2013)

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Review Biotechnology & Applied Microbiology

The application of loop-mediated isothermal amplification (LAMP) in food testing for bacterial pathogens and fungal contaminants

Ludwig Niessen et al.

FOOD MICROBIOLOGY (2013)

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Review Food Science & Technology

DNA barcoding as a new tool for food traceability

Andrea Galimberti et al.

FOOD RESEARCH INTERNATIONAL (2013)

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Article Biochemical Research Methods

Absolute quantification by droplet digital PCR versus analog real-time PCR

Christopher M. Hindson et al.

NATURE METHODS (2013)

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Article Multidisciplinary Sciences

Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens

Martijn Staats et al.

PLOS ONE (2013)

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Article Plant Sciences

NAVIGATING THE TIP OF THE GENOMIC ICEBERG: NEXT-GENERATION SEQUENCING FOR PLANT SYSTEMATICS

Shannon C. K. Straub et al.

AMERICAN JOURNAL OF BOTANY (2012)

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Article Chemistry, Analytical

Evaluation of a Droplet Digital Polymerase Chain Reaction Format for DNA Copy Number Quantification

Leonardo B. Pinheiro et al.

ANALYTICAL CHEMISTRY (2012)

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Article Integrative & Complementary Medicine

Quality of herbal medicines: Challenges and solutions

Junhua Zhang et al.

COMPLEMENTARY THERAPIES IN MEDICINE (2012)

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Article Food Science & Technology

DNA barcodes for everyday life: Routine authentication of Natural Health Products

Lauren J. Wallace et al.

FOOD RESEARCH INTERNATIONAL (2012)

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Article Chemistry, Analytical

DNA Barcode Identification of Black Cohosh Herbal Dietary Supplements

David A. Baker et al.

JOURNAL OF AOAC INTERNATIONAL (2012)

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Review Plant Sciences

Value chains of herbal medicines-Research needs and key challenges in the context of ethnopharmacology

Anthony Booker et al.

JOURNAL OF ETHNOPHARMACOLOGY (2012)

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Review Biochemical Research Methods

Isothermal nucleic acid amplification technologies for point-of-care diagnostics: a critical review

Pascal Craw et al.

LAB ON A CHIP (2012)

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Article Biochemistry & Molecular Biology

Towards next-generation biodiversity assessment using DNA metabarcoding

Pierre Taberlet et al.

MOLECULAR ECOLOGY (2012)

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Article Plant Sciences

Application of loop-mediated isothermal amplification (LAMP)-based technology for authentication of Catharanthus roseus (L.) G. Don

Anis Ahmad Chaudhary et al.

PROTOPLASMA (2012)

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Article Genetics & Heredity

Deep Sequencing of Plant and Animal DNA Contained within Traditional Chinese Medicines Reveals Legality Issues and Health Safety Concerns

Megan L. Coghlan et al.

PLOS GENETICS (2012)

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Article Chemistry, Analytical

High-Throughput Droplet Digital PCR System for Absolute Quantitation of DNA Copy Number

Benjamin J. Hindson et al.

ANALYTICAL CHEMISTRY (2011)

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Article Plant Sciences

DNA Barcoding of Panax Species

Yunjuan Zuo et al.

PLANTA MEDICA (2011)

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Article Chemistry, Analytical

Loop-Mediated Isothermal Amplification Integrated on Microfluidic Chips for Point-of-Care Quantitative Detection of Pathogens

Xueen Fang et al.

ANALYTICAL CHEMISTRY (2010)

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Article Chemistry, Applied

Novel approaches based on DNA barcoding and high-resolution melting of amplicons for authenticity analyses of berry species

Laura Jaakola et al.

FOOD CHEMISTRY (2010)

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Article Multidisciplinary Sciences

Validation of the ITS2 Region as a Novel DNA Barcode for Identifying Medicinal Plant Species

Shilin Chen et al.

PLOS ONE (2010)

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Article Biotechnology & Applied Microbiology

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

Andreas Gnirke et al.

NATURE BIOTECHNOLOGY (2009)

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Article Plant Sciences

Molecular Identification of Hypericum perforatum by PCR Amplification of the ITS and 5.8S rDNA Region

Caroline Howard et al.

PLANTA MEDICA (2009)

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Article Biotechnology & Applied Microbiology

A universal DNA mini-barcode for biodiversity analysis

Isabelle Meusnier et al.

BMC GENOMICS (2008)

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Article Pharmacology & Pharmacy

Rapid identification of Curcuma longa and C-aromatica by LAMP

Yohei Sasaki et al.

BIOLOGICAL & PHARMACEUTICAL BULLETIN (2007)

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Article Food Science & Technology

DNA-based authentication of plant extracts

Johannes Novak et al.

FOOD RESEARCH INTERNATIONAL (2007)

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Article Biochemistry & Molecular Biology

DNA detection using recombination proteins

Olaf Piepenburg et al.

PLOS BIOLOGY (2006)

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Article Biochemistry & Molecular Biology

DNA barcoding: Error rates based on comprehensive sampling

CP Meyer et al.

PLOS BIOLOGY (2005)

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Article Biology

Biological identifications through DNA barcodes

PDN Hebert et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2003)

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Article Biochemistry & Molecular Biology

Loop-mediated isothermal amplification of DNA

Tsugunori Notomi et al.

NUCLEIC ACIDS RESEARCH (2000)

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