Automatic segmentation of cotton roots in high-resolution minirhizotron images based on improved OCRNet

Root phenotypic parameters are the important basis for studying the growth state of plants, and root researchers obtain root phenotypic parameters mainly by analyzing root images. With the development of image processing technology, automatic analysis of root phenotypic parameters has become possible. And the automatic segmentation of roots in images is the basis for the automatic analysis of root phenotypic parameters. We collected high-resolution images of cotton roots in a real soil environment using minirhizotrons. The background noise of the minirhizotron images is extremely complex and affects the accuracy of the automatic segmentation of the roots. In order to reduce the influence of the background noise, we improved OCRNet by adding a Global Attention Mechanism (GAM) module to OCRNet to enhance the focus of the model on the root targets. The improved OCRNet model in this paper achieved automatic segmentation of roots in the soil and performed well in the root segmentation of the high-resolution minirhizotron images, achieving an accuracy of 0.9866, a recall of 0.9419, a precision of 0.8887, an F1 score of 0.9146 and an Intersection over Union (IoU) of 0.8426. The method provided a new approach to automatic and accurate root segmentation of high-resolution minirhizotron images.

Automated summary

Root phenotypic parameters are essential for studying plant growth, usually obtained through root image analysis. This paper proposes an improved OCRNet model with a Global Attention Mechanism (GAM) module to automatically segment roots in high-resolution minirhizotron images, achieving high accuracy. The method provides a new approach for automatic and accurate root segmentation of high-resolution minirhizotron images.