4.7 Review

Recent Development in Biomedical Applications of Oligonucleotides with Triplex-Forming Ability

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Physiology

Long non-coding RNAs: novel regulators of cellular physiology and function

James A. Oo et al.

Summary: Long non-coding RNAs were previously considered junk RNA, but are now known to play essential roles in diverse cellular processes. They control fundamental molecular functions and are relevant to many physiological and pathophysiological processes.

PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY (2022)

Review Biochemistry & Molecular Biology

Nucleic Acid Aptamers in Nanotechnology

Valentina V. Sinitsyna et al.

Summary: This review focuses on the characteristics and applications of nucleic acid aptamers, specifically DNA and RNA aptamers, and discusses the recent advances in their application in nanotechnology.

BIOMEDICINES (2022)

Article Multidisciplinary Sciences

A scaffold lncRNA shapes the mitosis to meiosis switch

Vedrana Andric et al.

Summary: In fission yeast, the uncharacterized lncRNA mamRNA plays a central role in shaping the meiotic gene expression program by scaffolding the antagonistic RNA-binding proteins Mmi1 and Mei2 to ensure their reciprocal inhibition during mitotic growth.

NATURE COMMUNICATIONS (2021)

Review Medical Laboratory Technology

Are antioxidant enzymes essential markers in the diagnosis and monitoring of cancer patients-A review

Elzbieta Cecerska-Heryc et al.

Summary: Reactive oxygen species (ROS) are significant in human cells, with antioxidant enzymes playing a crucial role in maintaining balance and diagnosing neoplastic diseases. Lowered activity of SOD, CAT, and GPx is characteristic of various cancers, making SOD, CAT, and XOR promising prognostic markers in lung, bladder, ovarian, and colon cancer.

CLINICAL BIOCHEMISTRY (2021)

Article Biophysics

Aptamer-based lateral flow assay on-site biosensors

Lei Huang et al.

Summary: The lateral flow assay (LFA) is a widely used paper-based on-site biosensor for detecting target analytes in minutes. Aptamers, as biorecognition molecules, are being explored as an alternative to antibodies in LFAs, offering advantages over traditional methods. Different formats of aptamer-based LFAs can achieve on-site detection of target analytes efficiently.

BIOSENSORS & BIOELECTRONICS (2021)

Article Biochemistry & Molecular Biology

Long Non-Coding RNA Regulation of Epigenetics in Vascular Cells

Hester Garratt et al.

Summary: Understanding the molecular drivers behind the function and dysfunction of endothelial cells and vascular smooth muscle cells is crucial for addressing vascular diseases. Deep sequencing approaches allow us to profile transcriptional regulation at various levels in vascular biology. Long non-coding RNAs play key roles in the epigenetic regulation of endothelial and smooth muscle cell function.

NON-CODING RNA (2021)

Article Biochemistry & Molecular Biology

Oxidative DNA Cleavage with Clip-Phenanthroline Triplex-Forming Oligonucleotide Hybrids

Alessandro Panattoni et al.

CHEMBIOCHEM (2020)

Article Multidisciplinary Sciences

RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions

Alessandro Bonetti et al.

NATURE COMMUNICATIONS (2020)

Article Chemistry, Physical

Folding Kinetics of G-Quadruplexes: Duplex Stem Loops Drive and Accelerate G-Quadruplex Folding

Thi Quynh Ngoc Nguyen et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2020)

Article Biochemistry & Molecular Biology

Recent advances in the development of ligands specifically targeting telomeric multimeric G-quadruplexes

Jingfang Zhao et al.

BIOORGANIC CHEMISTRY (2020)

Review Biophysics

Observation of nucleic acids inside living human cells by in-cell NMR spectroscopy

Yudai Yamaoki et al.

BIOPHYSICS AND PHYSICOBIOLOGY (2020)

Article Biochemical Research Methods

Deep learning based DNA:RNA triplex forming potential prediction

Yu Zhang et al.

BMC BIOINFORMATICS (2020)

Review Biochemical Research Methods

Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools

Ivan V. Antonov et al.

BRIEFINGS IN BIOINFORMATICS (2019)

Review Cell Biology

Regulation of microRNA biogenesis and its crosstalk with other cellular pathways

Thomas Treiber et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2019)

Review Biochemistry & Molecular Biology

R-Loops as Cellular Regulators and Genomic Threats

Madzia P. Crossley et al.

MOLECULAR CELL (2019)

Article Biochemistry & Molecular Biology

DNA stretching induces Cas9 off-target activity

Matthew D. Newton et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2019)

Article Biochemistry & Molecular Biology

Detection of RNA-DNA binding sites in long noncoding RNAs

Chao-Chung Kuo et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Multidisciplinary Sciences

DNA•RNA triple helix formation can function as a cis-acting regulatory mechanism at the human β-globin locus

Zhuo Zhou et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Review Cell Biology

Cellular functions of long noncoding RNAs

Run-Wen Yao et al.

NATURE CELL BIOLOGY (2019)

Article Biochemistry & Molecular Biology

The dynamics of forming a triplex in an artificial telomere inferred by DNA mechanics

Ning Li et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemical Research Methods

GRID-seq for comprehensive analysis of global RNA-chromatin interactions

Bing Zhou et al.

NATURE PROTOCOLS (2019)

Article Biochemistry & Molecular Biology

Closing the DNA replication cycle: from simple circular molecules to supercoiled and knotted DNA catenanes

Jorge B. Schvartzman et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Multidisciplinary Sciences

Time-resolved NMR monitoring of tRNA maturation

Pierre Barraud et al.

NATURE COMMUNICATIONS (2019)

Article Chemistry, Multidisciplinary

Quantitative characterization of oligomeric state of G-quadruplex antithrombin aptamers by size exclusion HPLC

Rugiya R. Alieva et al.

MENDELEEV COMMUNICATIONS (2019)

Review Biochemistry & Molecular Biology

R Loops: From Physiological to Pathological Roles

Tatiana Garcia-Muse et al.

Article Biochemical Research Methods

Mapping RNA chromatin interactions by sequencing with iMARGI

Weixin Wu et al.

NATURE PROTOCOLS (2019)

Article Biochemistry & Molecular Biology

Isolation and genome-wide characterization of cellular DNA:RNA triplex structures

Nevcin Sentuerk Cetin et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Chemistry, Multidisciplinary

Electrochemical Aptamer-Based Sensor for Real-Time Monitoring of Insulin

Yao Wu et al.

ACS SENSORS (2019)

Review Chemistry, Multidisciplinary

Molecular methods for assessment of non-covalent metallodrug-DNA interactions

Andrew Kellett et al.

CHEMICAL SOCIETY REVIEWS (2019)

Article Chemistry, Organic

Design of thiazole orange oligonucleotide probes for detection of DNA and RNA by fluorescence and duplex melting

Piotr Klimkowski et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2019)

Article Biochemistry & Molecular Biology

Triplex-forming oligonucleotides: a third strand for DNA nanotechnology

Arun Richard Chandrasekaran et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Chemistry, Multidisciplinary

Evaluation of the Stability of DNA i-Motifs in the Nuclei of Living Mammalian Cells

Simon Dzatko et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2018)

Review Biophysics

Recent advances on aptamer-based biosensors to detection of platelet-derived growth factor

Nasrin Razmi et al.

BIOSENSORS & BIOELECTRONICS (2018)

Review Biophysics

Triple-helix molecular switch-based aptasensors and DNA sensors

Elnaz Bagheri et al.

BIOSENSORS & BIOELECTRONICS (2018)

Article Chemistry, Multidisciplinary

Double-Stranded RNA-Specific Templated Reaction with Triplex Forming PNA

Ki Tae Kim et al.

HELVETICA CHIMICA ACTA (2018)

Article Chemistry, Physical

Asynchrony of Base-Pair Breaking and Nucleotide Releasing of Helicases in DNA Unwinding

Jian-Bing Ma et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2018)

Article Chemistry, Multidisciplinary

I-motif DNA structures are formed in the nuclei of human cells

Mahdi Zeraati et al.

NATURE CHEMISTRY (2018)

Article Chemistry, Organic

Kinetic and thermodynamic analysis of triplex formation between peptide nucleic acid and double-stranded RNA

Takaya Sato et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2018)

Article Chemistry, Physical

The first successful observation of in-cell NMR signals of DNA and RNA in living human cells

Yudai Yamaoki et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2018)

Review Engineering, Biomedical

Bioderived DNA Nanomachines for Potential Uses in Biosensing, Diagnostics, and Therapeutic Applications

Chava Angell et al.

ADVANCED HEALTHCARE MATERIALS (2018)

Review Chemistry, Medicinal

pH-Control in Aptamer-Based Diagnostics, Therapeutics, and Analytical Applications

Micaela Belleperche et al.

PHARMACEUTICALS (2018)

Editorial Material Biochemistry & Molecular Biology

Role of non-coding RNA transcription around gene regulatory elements in transcription factor recruitment

Naomichi Takemata et al.

RNA BIOLOGY (2017)

Review Chemistry, Multidisciplinary

Triplex DNA Nanostructures: From Basic Properties to Applications

Yuwei Hu et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2017)

Article Chemistry, Multidisciplinary

19F NMR Spectroscopic Analysis of the Binding Modes in Triple-Helical Peptide Nucleic Acid (PNA)/MicroRNA Complexes

Ville Tahtinen et al.

CHEMISTRY-A EUROPEAN JOURNAL (2017)

Article Chemistry, Multidisciplinary

Nucleobase-Modified PNA Suppresses Translation by Forming a Triple Helix with a Hairpin Structure in mRNA InVitro and in Cells

Tamaki Endoh et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2016)

Article Chemistry, Multidisciplinary

Aminopyridinyl-Pseudodeoxycytidine Derivatives Selectively Stabilize Antiparallel Triplex DNA with Multiple CG Inversion Sites

Hidenori Okamura et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2016)

Article Biophysics

Aptamer-based nanobiosensors

Yeon Seok Kim et al.

BIOSENSORS & BIOELECTRONICS (2016)

Article Biochemistry & Molecular Biology

Transcription-coupled DNA supercoiling dictates the chromosomal arrangement of bacterial genes

Patrick Sobetzko

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation

Marie Kalwa et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Targeting the Human Androgen Receptor Gene with Platinated Triplex-Forming Oligonucleotides

Mindy K. Graham et al.

BIOCHEMISTRY (2015)

Review Biophysics

Recent advances in nanoparticle based aptasensors for food contaminants

Richa Sharma et al.

BIOSENSORS & BIOELECTRONICS (2015)

Article Biochemistry & Molecular Biology

LncRNA Khps1 Regulates Expression of the Proto-oncogene SPHK1 via Triplex-Mediated Changes in Chromatin Structure

Anna Postepska-Igielska et al.

MOLECULAR CELL (2015)

Review Genetics & Heredity

RNA-mediated epigenetic regulation of gene expression

Daniel Holoch et al.

NATURE REVIEWS GENETICS (2015)

Review Genetics & Heredity

R loops: new modulators of genome dynamics and function

Jose M. Santos-Pereira et al.

NATURE REVIEWS GENETICS (2015)

Article Multidisciplinary Sciences

Role for RNA: DNA hybrids in origin-independent replication priming in a eukaryotic system

Ruth Stuckey et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

MEG3 long noncoding RNA regulates the TGF-β pathway genes through formation of RNA-DNA triplex structures

Tanmoy Mondal et al.

NATURE COMMUNICATIONS (2015)

Article Chemistry, Multidisciplinary

The Structure of G-Quadruplex Thrombine-binding DNA Aptamer RA36

A. V. Yuminova et al.

MOSCOW UNIVERSITY CHEMISTRY BULLETIN (2015)

Review Chemistry, Medicinal

Peptide nucleic acids: a review on recent patents and technology transfer

Roberto Gambari

EXPERT OPINION ON THERAPEUTIC PATENTS (2014)

Article Chemistry, Multidisciplinary

Mechanism and Manipulation of DNA:RNA Hybrid G-Quadruplex Formation in Transcription of G-Rich DNA

Jia-yu Zhang et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)

Article Biochemistry & Molecular Biology

Sequence Selective Recognition of Double-Stranded RNA at Physiologically Relevant Conditions Using PNA-Peptide Conjugates

Oluwatoyosi Muse et al.

ACS CHEMICAL BIOLOGY (2013)

Article Biochemical Research Methods

Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci

Fabian A. Buske et al.

BIOINFORMATICS (2013)

Review Biochemistry & Molecular Biology

Rise of the RNA Machines: Exploring the Structure of Long Non-Coding RNAs

Irina V. Novikova et al.

JOURNAL OF MOLECULAR BIOLOGY (2013)

Review Multidisciplinary Sciences

TET enzymes, TDG and the dynamics of DNA demethylation

Rahul M. Kohli et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

Telomeric RNA-DNA hybrids affect telomere-length dynamics and senescence

Bettina Balk et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Review Biochemistry & Molecular Biology

Structure and function of long noncoding RNAs in epigenetic regulation

Tim R. Mercer et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Recognition of RNA duplexes by chemically modified triplex-forming oligonucleotides

Yuan Zhou et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Chemistry, Inorganic & Nuclear

Synthesis, characterisation and bioimaging of a fluorescent rhenium-containing PNA bioconjugate

Gilles Gasser et al.

DALTON TRANSACTIONS (2012)

Article Biochemistry & Molecular Biology

Triplexator: Detecting nucleic acid triple helices in genomic and transcriptomic data

Fabian A. Buske et al.

GENOME RESEARCH (2012)

Article Oncology

Peptide nucleic acids targeting miR-221 modulate p27Kip1 expression in breast cancer MDA-MB-231 cells

Eleonora Brognara et al.

INTERNATIONAL JOURNAL OF ONCOLOGY (2012)

Article Biochemistry & Molecular Biology

Sensitive and label-free biosensing of RNA with predicted secondary structures by a triplex affinity capture method

Laura G. Carrascosa et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Biophysics

Bullied no more: when and how DNA shoves proteins around

Jonathan M. Fogg et al.

QUARTERLY REVIEWS OF BIOPHYSICS (2012)

Article Chemistry, Analytical

Design of Aptamer-Based Sensing Platform Using Triple-Helix Molecular Switch

Jing Zheng et al.

ANALYTICAL CHEMISTRY (2011)

Article Biochemistry & Molecular Biology

Thermodynamics of Nucleic Acid Shape Readout by an Aminosugar

Hongjuan Xi et al.

BIOCHEMISTRY (2011)

Article Chemistry, Multidisciplinary

Triple helical recognition of pyrimidine inversions in polypurine tracts of RNA by nucleobase-modified PNA

Pankaj Gupta et al.

CHEMICAL COMMUNICATIONS (2011)

Article Biochemistry & Molecular Biology

Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions

Ci Chu et al.

MOLECULAR CELL (2011)

Article Multidisciplinary Sciences

The genomic binding sites of a noncoding RNA

Matthew D. Simon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Biochemistry & Molecular Biology

HIV-1 RT-Associated RNase H Function Inhibitors: Recent Advances in Drug Development

E. Tramontano et al.

CURRENT MEDICINAL CHEMISTRY (2010)

Article Chemistry, Multidisciplinary

Short Peptide Nucleic Acids Bind Strongly to Homopurine Tract of Double Helical RNA at pH 5.5

Ming Li et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

Article Biochemistry & Molecular Biology

Direct Observation of Single Molecule Conformational Change of Tight-Turn Paperclip DNA Triplex in Solution

Ching-Ping Liu et al.

APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY (2009)

Article Biotechnology & Applied Microbiology

Allele-specific silencing of mutant huntingtin and ataxin-3 genes by targeting expanded CAG repeats in mRNAs

Jiaxin Hu et al.

NATURE BIOTECHNOLOGY (2009)

Article Biochemistry & Molecular Biology

High-affinity triplex targeting of double stranded DNA using chemically modified peptide nucleic acid oligomers

Mads E. Hansen et al.

NUCLEIC ACIDS RESEARCH (2009)

Review Biochemistry & Molecular Biology

Recognition of the unique structure of DNA:RNA hybrids

Nicholas N. Shaw et al.

BIOCHIMIE (2008)

Review Biochemistry & Molecular Biology

DNA triple helices: Biological consequences and therapeutic potential

Aklank Jain et al.

BIOCHIMIE (2008)

Article Chemistry, Medicinal

Molecular recognition of a DNA:RNA hybrid:: Sub-nanomolar binding by a neomycin-methidium conjugate

Nicholas N. Shaw et al.

BIOORGANIC & MEDICINAL CHEMISTRY LETTERS (2008)

Article Biochemistry & Molecular Biology

Purine twisted-intercalating nucleic acids: a new class of anti-gene molecules resistant to potassium-induced aggregation

Manikandan Paramasivam et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Biochemical Research Methods

Aptamers:: molecular tools for analytical applications

Teresa Mairal et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

A common topology for bacterial and eukaryotic transcription initiation?

Andrew Travers et al.

EMBO REPORTS (2007)

Review Biophysics

Analytical applications of aptamers

S Tombelli et al.

BIOSENSORS & BIOELECTRONICS (2005)

Article Nanoscience & Nanotechnology

PCR-BASED SYNTHESIS OF REPETITIVE SINGLE-STRANDED DNA FOR APPLICATIONS TO NANOBIOTECHNOLOGY

Sima S. Zein et al.

INTERNATIONAL JOURNAL OF NANOSCIENCE (2005)

Article Biochemistry & Molecular Biology

Mechanistic studies on DNA damage by minor groove binding copper-phenanthroline conjugates

BC Bales et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Triplex-forming oligonucleotide target sequences in the human genome

JR Goni et al.

NUCLEIC ACIDS RESEARCH (2004)

Review Oncology

Telomerase inhibition as cancer therapy

G Saretzki

CANCER LETTERS (2003)

Review Chemistry, Organic

Nucleic acid triple helices: Stability effects of nucleobase modifications

J Robles et al.

CURRENT ORGANIC CHEMISTRY (2002)

Article Multidisciplinary Sciences

A new recommended dietary allowance of vitamin C for healthy young women

M Levine et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)

Article Chemistry, Multidisciplinary

Molecular recognition of a RNA:DNA hybrid structure

JS Ren et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2001)

Article Multidisciplinary Sciences

Telomerase inhibitors based on quadruplex ligands selected by a fluorescence assay

JL Mergny et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)