相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Incorporating evolutionary and threat processes into crop wild relatives conservation
Wolke Tobon-Niedfeldt et al.
NATURE COMMUNICATIONS (2022)
Ongoing ecological and evolutionary consequences by the presence of transgenes in a wild cotton population
Valeria Vazquez-Barrios et al.
SCIENTIFIC REPORTS (2021)
Conservation and Use of Latin American Maize Diversity: Pillar of Nutrition Security and Cultural Heritage of Humanity
Filippo Guzzon et al.
AGRONOMY-BASEL (2021)
The importance of the traditional milpa in food security and nutritional self-sufficiency in the highlands of Oaxaca, Mexico
Ivan P. Novotny et al.
PLOS ONE (2021)
Development of chloroplast genome resources for peanut (Arachis hypogaea L.) and other species of Arachis (vol 7, 11649, 2017)
Dongmei Yin et al.
SCIENTIFIC REPORTS (2021)
Comparative chloroplast genome analysis of Impatiens species (Balsaminaceae) in the karst area of China: insights into genome evolution and phylogenomic implications
Chao Luo et al.
BMC GENOMICS (2021)
Eco-Geography of Feral Cotton: A Missing Piece in the Puzzle of Gene Flow Dynamics Among Members of Gossypium hirsutum Primary Gene Pool
Valeria Alavez et al.
FRONTIERS IN ECOLOGY AND EVOLUTION (2021)
Chloroplast genomic diversity in Bulbophyllum section Macrocaulia (Orchidaceae, Epidendroideae, Malaxideae): Insights into species divergence and adaptive evolution
Hanqing Tang et al.
PLANT DIVERSITY (2021)
Extinction risk of Mesoamerican crop wild relatives
Barbara Goettsch et al.
PLANTS PEOPLE PLANET (2021)
The complete chloroplast genome sequence of yellow mustard (Sinapis alba L.) and its phylogenetic relationship to other Brassicaceae species
Xuye Du et al.
GENE (2020)
Genomic Evidence for Complex Domestication History of the Cultivated Tomato in Latin America
Hamid Razifard et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Genetic Analysis of the Transition from Wild to Domesticated Cotton (Gossypium hirsutum L.)
Corrinne E. Grover et al.
G3-GENES GENOMES GENETICS (2020)
Comparative analysis of chloroplast genomes for five Dicliptera species (Acanthaceae): molecular structure, phylogenetic relationships, and adaptive evolution
Sunan Huang et al.
PEERJ (2020)
Comparative analysis of four Zantedeschia chloroplast genomes: expansion and contraction of the IR region, phylogenetic analyses and SSR genetic diversity assessment
Shuilian He et al.
PEERJ (2020)
Complete Chloroplast Genome Sequence of Hibiscus cannabinus and Comparative Analysis of the Malvaceae Family
Yan Cheng et al.
FRONTIERS IN GENETICS (2020)
The relevance of gene flow with wild relatives in understanding the domestication process
Alejandra Moreno-Letelier et al.
ROYAL SOCIETY OPEN SCIENCE (2020)
The plastid transcription machinery and its coordination with the expression of nuclear genome: Plastid-Encoded Polymerase, Nuclear-Encoded Polymerase and the Genomes Uncoupled 1-mediated retrograde communication
Luca Tadini et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2020)
Cultivated Tomato (Solanum lycopersicum L.) Suffered a Severe Cytoplasmic Bottleneck during Domestication: Implications from Chloroplast Genomes
Rachele Tamburino et al.
PLANTS-BASEL (2020)
Intraspecific variation within Castor bean (Ricinus communis L.) based on chloroplast genomes
Sammy Muraguri et al.
INDUSTRIAL CROPS AND PRODUCTS (2020)
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
Jian-Jun Jin et al.
GENOME BIOLOGY (2020)
Genome-wide genotyping of a novel Mexican Chile Pepper collection illuminates the history of landrace differentiation after Capsicum annuum L. domestication
Nathan Taitano et al.
EVOLUTIONARY APPLICATIONS (2019)
Plant carbon metabolism and climate change: elevated CO2 and temperature impacts on photosynthesis, photorespiration and respiration
Mirindi Eric Dusenge et al.
NEW PHYTOLOGIST (2019)
Sequencing and Comparative Analysis of the Chloroplast Genome of Angelica polymorpha and the Development of a Novel Indel Marker for Species Identification
Inkyu Park et al.
MOLECULES (2019)
Wild Origins of Macadamia Domestication Identified Through Intraspecific Chloroplast Genome Sequencing
Catherine J. Nock et al.
FRONTIERS IN PLANT SCIENCE (2019)
NGSEP3: accurate variant calling across species and sequencing protocols
Daniel Tello et al.
BIOINFORMATICS (2019)
CPGAVAS2, an integrated plastome sequence annotator and analyzer
Linchun Shi et al.
NUCLEIC ACIDS RESEARCH (2019)
OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
Stephan Greiner et al.
NUCLEIC ACIDS RESEARCH (2019)
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
In vitro performance in cotton plants with different genetic backgrounds: the case of Gossypium hirsutum in Mexico, and its implications for germplasm conservation
Alejandra Hernandez-Teran et al.
PEERJ (2019)
Structure and Genetic Diversity of Nine Important Landraces of Capsicum Species Cultivated in the Yucatan Peninsula, Mexico
Lucero del C. Lopez Castilla et al.
AGRONOMY-BASEL (2019)
Role of ClpP in the Biogenesis and Degradation of RuBisCO and ATP Synthase in Chlamydomonas reinhardtii
Wojciech Majeran et al.
PLANTS-BASEL (2019)
Contemporary evolution of maize landraces and their wild relatives influenced by gene flow with modern maize varieties
Idalia C. Rojas-Barrera et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Tracing back the origin of pumpkins (Cucurbita pepo ssp. pepo L.) in Mexico
Gabriela Castellanos-Morales et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)
Signatures of differential selection in chloroplast genome between japonica and indica
Lin Cheng et al.
RICE (2019)
Intergenomic gene transfer in diploid and allopolyploid Gossypium
Nan Zhao et al.
BMC PLANT BIOLOGY (2019)
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
Kazutaka Katoh et al.
BRIEFINGS IN BIOINFORMATICS (2019)
Genomic introgression through interspecific hybridization counteracts genetic bottleneck during soybean domestication
Xutong Wang et al.
GENOME BIOLOGY (2019)
Genotyping-by-Sequencing of Gossypium hirsutum Races and Cultivars Uncovers Novel Patterns of Genetic Relationships and Domestication Footprints
Shulin Zhang et al.
EVOLUTIONARY BIOINFORMATICS (2019)
Introgression from cultivated rice alters genetic structures of wild relative populations: implications for in situ conservation
Xin Jin et al.
AOB PLANTS (2018)
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Andrew Rambaut et al.
SYSTEMATIC BIOLOGY (2018)
Comparative Chloroplast Genomics of Gossypium Species: Insights Into Repeat Sequence Variations and Phylogeny
Ying Wu et al.
FRONTIERS IN PLANT SCIENCE (2018)
The Mating System of the Wild-to-Domesticated Complex of Gossypium hirsutum L. Is Mixed
Rebeca Velazquez-Lopez et al.
FRONTIERS IN PLANT SCIENCE (2018)
The Impact of Genetic Changes during Crop Domestication
Petr Smykal et al.
AGRONOMY-BASEL (2018)
Complete chloroplast genome sequence of Fagopyrum dibotrys: genome features, comparative analysis and phylogenetic relationships
Xumei Wang et al.
SCIENTIFIC REPORTS (2018)
Designations for individual genomes and chromosomes in Gossypium
Wang Kunbo et al.
JOURNAL OF COTTON RESEARCH (2018)
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Marc A. Suchard et al.
VIRUS EVOLUTION (2018)
Introgressiomics: a new approach for using crop wild relatives in breeding for adaptation to climate change
Jaime Prohens et al.
EUPHYTICA (2017)
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
Julio Rozas et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Molecular evolution of the plastid genome during diversification of the cotton genus
Zhiwen Chen et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2017)
GeSeq - versatile and accurate annotation of organelle genomes
Michael Tillich et al.
NUCLEIC ACIDS RESEARCH (2017)
Toward an Evolved Concept of Landrace
Francesc Casanas et al.
FRONTIERS IN PLANT SCIENCE (2017)
The interaction between endogenous 30S ribosomal subunit protein S11 and Cucumber mosaic virus LS2b protein affects viral replication, infection and gene silencing suppressor activity
Ruilin Wang et al.
PLOS ONE (2017)
Inferring the evolutionary mechanism of the chloroplast genome size by comparing wholechloroplast genome sequences in seed plants
Zheng Xiao-Ming et al.
SCIENTIFIC REPORTS (2017)
Chloroplast DNA Structural Variation, Phylogeny, and Age of Divergence among Diploid Cotton Species
Zhiwen Chen et al.
PLOS ONE (2016)
Dynamics of chloroplast genomes in green plants
Jian-Hong Xu et al.
GENOMICS (2015)
A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus
Jose Carbonell-Caballero et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Effects of domestication on genetic diversity in Chimonanthus praecox: Evidence from chloroplast DNA and amplified fragment length polymorphism data
Yi-Jun Lu et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2015)
POPART: full-feature software for haplotype network construction
Jessica W. Leigh et al.
METHODS IN ECOLOGY AND EVOLUTION (2015)
Experimental assessment of gene flow between transgenic squash and a wild relative in the center of origin of cucurbits
Rogelio Cruz-Reyes et al.
ECOSPHERE (2015)
Comparative Bioinformatics Analysis of the Chloroplast Genomes of a Wild Diploid Gossypium and Two Cultivated Allotetraploid Species
Farshid Talat et al.
IRANIAN JOURNAL OF BIOTECHNOLOGY (2015)
Los sistemas agroforestales tradicionales de México: Una aproximación biocultural
Ana Isabel Moreno-Calles et al.
Botanical Sciences (2015)
Wild to crop introgression and genetic diversity in Lima bean (Phaseolus lunatus L.) in traditional Mayan milpas from Mexico
Dzul-Tejero Felix et al.
CONSERVATION GENETICS (2014)
Cytoplasmic diversity of the cotton genus as revealed by chloroplast microsatellite markers
Pengbo Li et al.
GENETIC RESOURCES AND CROP EVOLUTION (2014)
Multiple lines of evidence for the origin of domesticated chili pepper, Capsicum annuum, in Mexico
Kraig H. Kraft et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Multiple domestications of the Mesoamerican gene pool of lima bean (Phaseolus lunatus L.): evidence from chloroplast DNA sequences
R. H. Andueza-Noh et al.
GENETIC RESOURCES AND CROP EVOLUTION (2013)
pamlX: A Graphical User Interface for PAML
Bo Xu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software
Lu Cheng et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Evolution of crop species: genetics of domestication and diversification
Rachel S. Meyer et al.
NATURE REVIEWS GENETICS (2013)
Disentangling the Origins of Cultivated Sweet Potato (Ipomoea batatas (L.) Lam.)
Caroline Roullier et al.
PLOS ONE (2013)
Uncovering the Protein Translocon at the Chloroplast Inner Envelope Membrane
Shingo Kikuchi et al.
SCIENCE (2013)
Introgression of transgenic crop alleles: Its evolutionary impacts on conserving genetic diversity of crop wild relatives
Bao-Rong Lu
JOURNAL OF SYSTEMATICS AND EVOLUTION (2013)
Wholesale replacement of lima bean (Phaseolus lunatus L.) landraces over the last 30 years in northeastern Campeche, Mexico
J. Martinez-Castillo et al.
GENETIC RESOURCES AND CROP EVOLUTION (2012)
jModelTest 2: more models, new heuristics and parallel computing
Diego Darriba et al.
NATURE METHODS (2012)
Photosynthesis, photorespiration and productivity of wheat and soybean genotypes
Jalal A. Aliyev
PHYSIOLOGIA PLANTARUM (2012)
Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding
Wenpan Dong et al.
PLOS ONE (2012)
Analysis of Complete Nucleotide Sequences of 12 Gossypium Chloroplast Genomes: Origin and Evolution of Allotetraploids
Qin Xu et al.
PLOS ONE (2012)
Recent long-distance transgene flow into wild populations conforms to historical patterns of gene flow in cotton (Gossypium hirsutum) at its centre of origin
A. Wegier et al.
MOLECULAR ECOLOGY (2011)
Identification of Nuclear Genes Encoding Chloroplast-Localized Proteins Required for Embryo Development in Arabidopsis
Nicole Bryant et al.
PLANT PHYSIOLOGY (2011)
Origin of agriculture and plant domestication in West Mesoamerica
Daniel Zizumbo-Villarreal et al.
GENETIC RESOURCES AND CROP EVOLUTION (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
Multiple Origins of Lima Bean Landraces in the Americas: Evidence from Chloroplast and Nuclear DNA Polymorphisms
Jenny R. Motta-Aldana et al.
CROP SCIENCE (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Tracing the Geographic Origins of Major Avocado Cultivars
Haofeng Chen et al.
JOURNAL OF HEREDITY (2009)
Complete nucleotide sequence of the cotton (Gossypium barbadense L.) chloroplast genome with a comparative analysis of sequences among 9 dicot plants
Rashid Ismael Hag Ibrahim et al.
GENES & GENETIC SYSTEMS (2006)
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
Mikita Suyama et al.
NUCLEIC ACIDS RESEARCH (2006)
Agrobacterium-mediated genetic transformation of plants:: biology and biotechnology
T Tzfira et al.
CURRENT OPINION IN BIOTECHNOLOGY (2006)
The complete chloroplast genome sequence of Gossypium hirsutum:: organization and phylogenetic relationships to other angiosperms
Seung-Bum Lee et al.
BMC GENOMICS (2006)
Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) joinmap
M Ulloa et al.
JOURNAL OF HEREDITY (2005)
Stable transformation of the cotton plastid genome and maternal inheritance of transgenes
S Kumar et al.
PLANT MOLECULAR BIOLOGY (2004)
High-frequency gene transfer from the chloroplast genome to the nucleus
S Stegemann et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Targeted inactivation of the plastid ndhB gene in tobacco results in an enhanced sensitivity of photosynthesis to moderate stomatal closure
EM Horváth et al.
PLANT PHYSIOLOGY (2000)
The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes
A Drescher et al.
PLANT JOURNAL (2000)